mRNA_C-tenellus_contig11562.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11562.1.1
Unique NamemRNA_C-tenellus_contig11562.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11562.1.1 vs. uniprot
Match: A0A6H5LD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD80_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.520e-27
Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:    1 QADLEARVKRDMENARRRCLEVKERGQATSAAEERIKRAAGGQWASVRSDRNRLMRATKASKERQLDPEMLDDLYFERASQPAHSGGIANSGRDLRF-QGRAVPTWRAG 324
            Q D+E R +RD++ AR R  EV  +      AE+R K AA G+W  V +DR+RL+R TKASKER L+PE LDDL   RAS PAH   IA SGRDLRF QGRAVP WR G
Sbjct:   78 QVDIEDRARRDVDRARARRQEVALKELHQKEAEQRKKAAACGRWVGVEADRSRLLRGTKASKERMLEPEDLDDLEDRRASLPAHCSPIAISGRDLRFNQGRAVPAWRRG 186
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11562.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LD80_9PHAE2.520e-2757.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11562contigC-tenellus_contig11562:2530..3242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_001250.1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.786051-CDS-C-tenellus_contig11562:2529..26941680789183.786051-CDS-C-tenellus_contig11562:2529..2694Choristocarpus tenellus KU2346CDSC-tenellus_contig11562 2530..2694 -
1680789183.7951639-CDS-C-tenellus_contig11562:3065..32421680789183.7951639-CDS-C-tenellus_contig11562:3065..3242Choristocarpus tenellus KU2346CDSC-tenellus_contig11562 3066..3242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11562.1.1prot_C-tenellus_contig11562.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11562 2530..3242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11562.1.1

>prot_C-tenellus_contig11562.1.1 ID=prot_C-tenellus_contig11562.1.1|Name=mRNA_C-tenellus_contig11562.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=114bp
QADLEARVKRDMENARRRCLEVKERGQATSAAEERIKRAAGGQWASVRSD
RNRLMRATKASKERQLDPEMLDDLYFERASQPAHSGGIANSGRDLRFQGR
AVPTWRAGVSALH*
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mRNA from alignment at C-tenellus_contig11562:2530..3242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11562.1.1 ID=mRNA_C-tenellus_contig11562.1.1|Name=mRNA_C-tenellus_contig11562.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=713bp|location=Sequence derived from alignment at C-tenellus_contig11562:2530..3242- (Choristocarpus tenellus KU2346)
CAGGCGGATCTGGAAGCTCGTGTGAAGCGCGACATGGAAAATGCTAGGAG
GAGGTGCCTTGAGGTCAAGGAAAGGGGGCAGGCGACTTCAGCAGCTGAGG
AGAGGATTAAGAGGGCAGCAGGGGGGCAGTGGGCTAGTGTTCGCTCCGAT
AGGAATCGACTCATGCGTGCAACCAAGGTTGGTCTCAAATTGGCAGGCGG
GGTGCCATGACATGTTTGTTGCTGTAATGGTACGCCCTTTTTTGAGACGT
GATGTGACTCCTGATTGTTTTTTCATCCAAGGAATCCCTGTATTATTATT
TTTTGTCTCACAAGGCTATTTTTTTTTTTCCATGTCAAAAGAGTATTTGA
GAGTAGAAACATACCCCTTGAATTAAGGTGCCTTAAAAGTGATGTTATGA
AACATTATCAGTATATGTTTCTCTACATCACCTTGAACTGCACATTTATA
ATAATAATAATAATAATAATTCTAGTGGATATTTCTGTTACTATTCTGTC
TCTCCTTCACTGCATCTCACCTCAACCGGATTAAAACACCATTCACAGGC
CTCTAAGGAGCGACAATTAGACCCAGAAATGCTGGACGACCTTTACTTTG
AACGAGCATCGCAACCTGCCCACAGTGGTGGGATAGCCAACTCTGGTCGA
GACCTCCGCTTCCAAGGACGTGCTGTCCCCACCTGGCGAGCAGGGGTGTC
AGCATTGCATTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11562:2530..3242-

>mRNA_C-tenellus_contig11562.1.1 ID=mRNA_C-tenellus_contig11562.1.1|Name=mRNA_C-tenellus_contig11562.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=342bp|location=Sequence derived from alignment at C-tenellus_contig11562:2530..3242- (Choristocarpus tenellus KU2346)
CAGGCGGATCTGGAAGCTCGTGTGAAGCGCGACATGGAAAATGCTAGGAG
GAGGTGCCTTGAGGTCAAGGAAAGGGGGCAGGCGACTTCAGCAGCTGAGG
AGAGGATTAAGAGGGCAGCAGGGGGGCAGTGGGCTAGTGTTCGCTCCGAT
AGGAATCGACTCATGCGTGCAACCAAGGCCTCTAAGGAGCGACAATTAGA
CCCAGAAATGCTGGACGACCTTTACTTTGAACGAGCATCGCAACCTGCCC
ACAGTGGTGGGATAGCCAACTCTGGTCGAGACCTCCGCTTCCAAGGACGT
GCTGTCCCCACCTGGCGAGCAGGGGTGTCAGCATTGCATTGA
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