mRNA_C-tenellus_contig11561.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11561.1.1
Unique NamemRNA_C-tenellus_contig11561.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: D7G032_ECTSI (Multi-sensor hybrid histidine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G032_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.160e-27
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:    4 GQVKELSAYRMLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQVK-YRIRHNHQRMQSVETSFRMASSKLIAFTRVIGDG 354
             QV EL AYRMLVEQAHDLIS H+ DDR +F +AS A+QR+LGI  ++L+G+QL+ L+H  D  RV E L   LL  ++ QV  YR+RH  Q   +VE+SFR+  +KL+A TRV G G
Sbjct:    3 NQVTELGAYRMLVEQAHDLISAHTTDDRTVFLYASNAFQRVLGISTEDLLGVQLIHLVHPDDAGRVTEALPPALLCNQVTQVVVYRLRHQQQEF-TVESSFRVVPTKLVAITRVGGPG 119
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BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: A0A6H5KZ44_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ44_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.810e-25
Identity = 65/122 (53.28%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:    4 GQVKELSAYRMLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQVK-YRIRHNHQRMQSVETSFRMASSKLIAFTRVIGDGDHAG 366
             QV EL AYRMLVEQAHDLIS H+ DDR +F +AS A+QR LGI  ++L+G+QL+ L+H  D  RV E L   LL  ++ QV  YR+RH  Q   +VE+SFR+  +KL+A TRV G G   G
Sbjct:  208 NQVTELGAYRMLVEQAHDLISAHTTDDRTVFLYASNAFQRALGIRTEDLLGVQLIHLVHPDDAGRVTEALRRALLCNQVTQVVVYRLRHQQQEF-TVESSFRVVPTKLVAITRVGGPGVAGG 328
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BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: D8LJL9_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.340e-18
Identity = 64/155 (41.29%), Postives = 87/155 (56.13%), Query Frame = 1 
Query:   16 ELSAYRMLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQVKYRIRH-NHQRMQSVETSFRMASSKLIAFTRVIGDGDHAGFPDRSMELPTPPSLSVSG--------QEREELGRGIS 453
            +L  YRMLVEQAHD+ISVHS D  A F  ASGA+ R LG +P +++G  L+ L+   D   V++ +   L  G + QV+YR+R  +      VETSFRMAS +L+A TR++G G         + L  P + S  G         E +ELG G S
Sbjct:  389 DLGPYRMLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGASLLDLVETKDVQAVVQAIMDTLSRGGIKQVQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVGAGVPRSVSPAKVPLLVPAAPSGGGGGGISPAVPEAKELGLGSS 543
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BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Match: A0A6H5KYK0_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK0_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.190e-15
Identity = 54/124 (43.55%), Postives = 74/124 (59.68%), Query Frame = 1 
Query:   16 ELSAYRMLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHVADTARVIEQLHMVLLYGKLVQ----------VKYRIRH-NHQRMQSVETSFRMASSKLIAFTRVIGDG 354
            +L  YRMLVEQAHD+ISVHS D  A F  ASGA+ R LG +P +++G  L+ L+   D   V++ +   L  G + Q          V+YR+R  +      VETSFRMAS +L+A TR++G G
Sbjct:  427 DLGPYRMLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGTSLLDLVEPKDVQAVVQAIMDTLSRGGIKQASFMHSVPKLVQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVGAG 550
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11561.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G032_ECTSI1.160e-2754.24Multi-sensor hybrid histidine kinase n=1 Tax=Ectoc... [more]
A0A6H5KZ44_9PHAE3.810e-2553.28PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJL9_ECTSI1.340e-1841.29PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KYK0_9PHAE7.190e-1543.55PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11561contigC-tenellus_contig11561:1111..4977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJL9
PFAMsPAS_3
Model size2057
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.11e-20
EggNOG OGs2CNC0@1|root,2QV4B@2759|Eukaryota
Ec32 ortholog descriptionBasic leucine zipper and PAS domain protein
Ec32 orthologEc-06_009130.1
DescriptionPAS domain
Cds size561
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.705547-UTR-C-tenellus_contig11561:1110..25731680789183.705547-UTR-C-tenellus_contig11561:1110..2573Choristocarpus tenellus KU2346UTRC-tenellus_contig11561 1111..2573 -
1680789183.755268-UTR-C-tenellus_contig11561:4944..49771680789183.755268-UTR-C-tenellus_contig11561:4944..4977Choristocarpus tenellus KU2346UTRC-tenellus_contig11561 4945..4977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.7245622-CDS-C-tenellus_contig11561:2573..29211680789183.7245622-CDS-C-tenellus_contig11561:2573..2921Choristocarpus tenellus KU2346CDSC-tenellus_contig11561 2574..2921 -
1680789183.7336733-CDS-C-tenellus_contig11561:3422..35241680789183.7336733-CDS-C-tenellus_contig11561:3422..3524Choristocarpus tenellus KU2346CDSC-tenellus_contig11561 3423..3524 -
1680789183.7467494-CDS-C-tenellus_contig11561:4833..49441680789183.7467494-CDS-C-tenellus_contig11561:4833..4944Choristocarpus tenellus KU2346CDSC-tenellus_contig11561 4834..4944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11561.1.1prot_C-tenellus_contig11561.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11561 2574..4944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11561.1.1

>prot_C-tenellus_contig11561.1.1 ID=prot_C-tenellus_contig11561.1.1|Name=mRNA_C-tenellus_contig11561.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=187bp
MLVEQAHDLISVHSPDDRAIFQFASGAYQRILGIDPKELVGLQLVQLIHV
ADTARVIEQLHMVLLYGKLVQVKYRIRHNHQRMQSVETSFRMASSKLIAF
TRVIGDGDHAGFPDRSMELPTPPSLSVSGQEREELGRGISIKTTGNSNGM
GGGGGGGRSSGVVGGMESGGFGSGGLSRTRSGGTVC*
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mRNA from alignment at C-tenellus_contig11561:1111..4977-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11561.1.1 ID=mRNA_C-tenellus_contig11561.1.1|Name=mRNA_C-tenellus_contig11561.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3867bp|location=Sequence derived from alignment at C-tenellus_contig11561:1111..4977- (Choristocarpus tenellus KU2346)
CAAGGGCAGGTGAAGGAGCTCAGTGCATACCGGATGCTGGTTGAACAGGC
ACACGATCTTATCTCTGTCCACTCCCCAGATGATCGTGCTATCTTTCAGT
TTGCTTCTGGGGCTTACCAACGAATATTGGGGATTGATCCAAAGGTGTGT
TCCATTGGTAGGTTGTTGCACAGATGGGAGAATATATACATGACAAGTAA
AACAGTACCAACTTTTAAAAAATTATTTTCCACAGTCCTTTTTCGACAGC
CTGAACATTTTATGTACACACACACACACAGACACACACACACACACACA
GACAGGCAGAGACAGACCAGATGGGCAGGAAGTGTTACGCCTTTTTTTTT
TTTGGTTTGACAGGACAGGACAGGACAGGACACATTGATACCAAGAGGAA
CAATGGGTGGTGTGAAGTGAATAATAGTAATAAATACGTGAGGCATGCCA
TTGGTCGGATGATGTCAGACTGTCCTGCCAATGCCCATCACTCTTGTGAC
ACTGCAGCTGTTGATTTTCCATCTTGATTTTTTATTTTTGTGATGCTGGG
AAAGCCTTCCCGGTTTATTCCACACTGCATAAGGGACAAGTACAAGATCA
CACACACCATATAGGCACAAGTGTACTTGACGATGGCATTTTTTAAGAAT
GGGGAGTAGGTGGGCAACCGGTTTGTTGCAGGTCCCGAGGTGTTGTCAAT
TATTTCTGTTTAGAAATAGTCAATTATTTCTAGATTTGAGGGGGTGAATG
AATCAAATCTAGTTGGATAAACCCACAACAGGCATGGCAGTTCCCGTTCT
GAAATCTTCCTCCTGTTGGAAATAAAGAGCCAAGGCACTTAAGACGGTAG
GACCACGTCCATTCGGGGCCTTAAATCCAATGTTGCGGTTTTGATCCATT
TTCCCCACTGCGCTTGTTAGCAAGTGTCGATGTCCTTGTTCCAAACACGC
CTTTCAAAGTTGTACTCCGAAATGTTTCGGAGCATGTAGCTGTGCTCTCA
CAGGAAACCGAAAAAGGGCATAATAAAAATCCATGGGAAGCCAAGCCCCA
AATGGACAAACTGGGAAAAACCCCTACCCTCTTAAATGCTCTGGGTCTGA
AGGAGTTGTGACACAGTTATTGATATAGTCTTGGGCGGTTTATGTACTGG
GTGCTATTAGTAGGATGAAACAAACTCCTGGGCGTTTAATGTTTGTGTGG
TTTTATATGTCATGTTGCTTCTTTTATGTGGGTTACATGTGACATATTGA
GCTTGACTTTGGCAATATATTAATTCCACCAAGACATGCATTGCCTTTGG
AAAAACTGCTGTCAGTGGTGCATGGTTGTTGGTGAATCTCCAGACAACCG
CTGAAAATCCACTTTCCAATTCACTTGGTCTATTGCGACCCCTGGCTTGT
ATCACCTCCCTTCTCTTTCTTGGCAAACCCTGACCTCCACTCTTCTGCAC
CAGGAGCTTGTTGGCCTGCAGCTGGTACAGCTTATTCATGTTGCTGACAC
GGCAAGGGTTATTGAACAGTTACACATGGTGCTTCTCTATGGGAAACTTG
TCCAGGTATTGCAGCTTAGTAGTGCCTTTCCCCTTTGAAATGTCCTCCCA
GTTTGTGTATATATCCTCCCAGTTTGTGTATGGGGCATAGCTGTGCGCTG
TGTTTGGATGATTAGAGATTAGTTCAACATGAAGTGGACTGTACTGTTAC
CATACTTGTAGCTGCCTAACTCCAATCATTTGATACTCAAGGACAAGCTC
CAGGGCCTAGATTTTCCTGGAATTATCATTCCCCTTCAGGTTTCTCATGC
AATTTAGGGTGTAAGAGAAATCTGGCAACTTCTATTCAAGGGTTTGATGA
TTTATAGCTGCTAAATCAACTCTGACTCAGGAGGTGATCCTGGTATGAGT
TGGCATTATTCAGTAGTGAGGATATTTCGTGTTAGGACATGCACCGCCTC
CTTTTGGAGGATGGACAATCACCGAACCGACCTACTTGCTCCTTTTTTTA
GTCCAACCATCGCCTCCCAACCATTGTATCCCCTGGTCTCTCGACGTGTG
GCAAAGGTCAAGTATCGCATTCGCCACAACCATCAGCGTATGCAAAGTGT
AGAAACCTCCTTCCGAATGGCTTCGTCTAAGCTGATCGCGTTCACAAGGG
TCATTGGAGATGGAGACCATGCAGGATTTCCAGATAGGTCGATGGAACTG
CCGACGCCCCCGTCACTCTCAGTGAGTGGGCAAGAGCGGGAAGAGTTAGG
TAGGGGCATCAGCATCAAGACCACAGGCAATAGCAATGGTATGGGCGGTG
GGGGTGGTGGTGGGAGGTCTAGTGGTGTGGTTGGAGGCATGGAAAGTGGC
GGTTTTGGAAGTGGGGGGCTCAGTCGCACTCGCAGTGGAGGCACGGTGTG
CTGACTCCTTGTGTCATGCTTGATCATTCATGCCTCTTGCCCCCTGGGAA
GTGTCATGGAGAGGAACGAGAGAGTTGCTATGCTGTTGGATTGGAGTGGT
CCTGAGTTTTGCCAGTTGCGAATGGTTGTGGCCGCTCCTGTGCAGTGCAG
AGACTTGCTGACTTTGTGCCTGTTTCAACTGCCTGTTGGAGTGGAGAGGG
TGACAATACATGGATGCACTTACATGTAAAGGAGGGATAGGAGAAGAAGC
CGGTTGTTAATATGGACATATTGTTTGATATGCTTTAAGGGTGGTTAAAA
TGCTATCGCCATCATGCCAAACTCCCTTGGGTATGTAGAGGTTCCTAGCC
CCAGGTTGTGAATTTCGCGTATCAGATGATCAATCTAGACACAGATTCCT
GAGACAGGAGGGCTGAGACAATCTATGTGGGAGACAACATCAGATGGGGA
GTTGGCAAGGACTGAGAGTTTTGTATCAGCTGTAGCTAACCCTGGTGGAC
ATTGCCTGTATGAGGTTTTCATACCGCTTTGTTCTTATTGTTCACATTTG
TGTAGTACTGTATCATGTGGAGTATTTTTTCATTAAGTTTGTGTGTGTAG
CTGTAAGTGTGACTGTGACTGGCTTTATGCGAATTGGTGATAGTCGTTTG
CTTTGGGTGAATAGGTGCCCCACAAAGTGTAGGGTGGGGATGGGTGGAAC
ATTGGTGTTGTGCATTTCACATGCCAAGAAACGAACCTGTCATTGTTCCT
ATAAGGATCAATTTGAGGTGATCTAGAATACATGGCTAGGGGAGAGAGTT
TCTTATCTCCATGGGAGTTCTGTTGTATGGTATGAGACCATTGTCTTGTG
CAGATACACAGGGAAGCTCATATCGGAGTATAGACAAATCATATTTGAGC
ATGAGCATTTTGTCAACAAAATGATGCAGTACTGGATATCTAGCTCTGAG
ATCAATGATGTCAGCACCAAGGATATGATTTGCTCAGGAAAATTTGAAGA
GGTGGGGTGGAGGTGTGTGGCAACTTCTCTCTGAAGAATATCTTGTATTC
TTATAGGACGGCAGCAATTGACTTTAAATCATCTTCAGGAGGTTGTCTCA
TTATGTGCCTGCAGCCACCCTCAACAGATCCACCTGTTGAACTCGAGGAA
TACATTTCTTTTGAGCAATTAAGCATTGCAGGTATCACTCTTATTACACA
CCTCTTGTTTGAAGCCTTGTGGTTGGTGTGGCAATTCATAAGGCAAAAAC
GAGATTTCTGTTTATTGGAAACCTGGAACAATTGAATGATGATACTTTTG
CGTGAGCCACCTGCGAGTAAATGATGGAGGGTTCAGGAGGGAGTAGAGTG
ACACGAATTATAGATCAGGGTGTGTTTGGTATTGAGTGACCCTGGGCAAG
CAAGATAAATGCTTGCTTCAACATTGTGGTGACATGACACCATTTTGGGC
ATGGTGTTGATTATTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11561:1111..4977-

>mRNA_C-tenellus_contig11561.1.1 ID=mRNA_C-tenellus_contig11561.1.1|Name=mRNA_C-tenellus_contig11561.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=561bp|location=Sequence derived from alignment at C-tenellus_contig11561:1111..4977- (Choristocarpus tenellus KU2346)
ATGCTGGTTGAACAGGCACACGATCTTATCTCTGTCCACTCCCCAGATGA
TCGTGCTATCTTTCAGTTTGCTTCTGGGGCTTACCAACGAATATTGGGGA
TTGATCCAAAGGAGCTTGTTGGCCTGCAGCTGGTACAGCTTATTCATGTT
GCTGACACGGCAAGGGTTATTGAACAGTTACACATGGTGCTTCTCTATGG
GAAACTTGTCCAGGTCAAGTATCGCATTCGCCACAACCATCAGCGTATGC
AAAGTGTAGAAACCTCCTTCCGAATGGCTTCGTCTAAGCTGATCGCGTTC
ACAAGGGTCATTGGAGATGGAGACCATGCAGGATTTCCAGATAGGTCGAT
GGAACTGCCGACGCCCCCGTCACTCTCAGTGAGTGGGCAAGAGCGGGAAG
AGTTAGGTAGGGGCATCAGCATCAAGACCACAGGCAATAGCAATGGTATG
GGCGGTGGGGGTGGTGGTGGGAGGTCTAGTGGTGTGGTTGGAGGCATGGA
AAGTGGCGGTTTTGGAAGTGGGGGGCTCAGTCGCACTCGCAGTGGAGGCA
CGGTGTGCTGA
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