mRNA_C-tenellus_contig11552.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11552.1.1
Unique NamemRNA_C-tenellus_contig11552.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11552.1.1 vs. uniprot
Match: A0A6H5K9Z7_9PHAE (Nuclear pore complex protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.650e-14
Identity = 75/211 (35.55%), Postives = 99/211 (46.92%), Query Frame = 1 
Query:  397 ERRPEERAFCTALKTFNGTVAGYQPGELAWKSCRLSFPILNELYEASSSAHKVASVAAERSLELHGGAGGNRRILSSAMDDEVKLAAEELQLEKNTWKLLHQLTQAREEDEQIKVAIGRDNAATMAATWASNGENRDGVMSLDAAPGPDAPDGEVLRRLRLRDAPYRRTEAIVKWLEDTATETLSGAPGLG--LLHNPSMWGRTLECIRDG 1023
            E RPEE+ FC A       +    PG  A +  ++S  IL ++Y  +  A   AS  A+R  EL G +G     +++A       AA EL LEK+TW LL  +    +EDE I   I R              E         A PGPDA D  +L  +R RDA +RRTEA+V+WL+  AT T   A GLG  +      W  TLE +  G
Sbjct:  151 EIRPEEKQFCEAFLELQALLNRLPPGVRA-RPEQIS-DILQDMYGFAEGAEAAASDTADRLRELRG-SGAPAVAVAAA-------AAHELSLEKDTWALLLIMNGVDKEDEDILEGIRRRE------------EEGGDANDSGAPPGPDASDEALLVSMRARDAEFRRTEAVVEWLQG-ATHTRLNALGLGGGVGEGHLGWSDTLESLAAG 338
[Close]
BLAST of mRNA_C-tenellus_contig11552.1.1 vs. uniprot
Match: D8LFJ1_ECTSI (Nuclear pore complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.970e-13
Identity = 75/212 (35.38%), Postives = 99/212 (46.70%), Query Frame = 1 
Query:  394 AERRPEERAFCTALKTFNGTVAGYQPGELAWKSCRLSFPILNELYEASSSAHKVASVAAERSLELHGGAGGNRRILSSAMDDEVKLAAEELQLEKNTWKLLHQLTQAREEDEQIKVAIGRDNAATMAATWASNGENRDGVMSLDAAPGPDAPDGEVLRRLRLRDAPYRRTEAIVKWLEDTATETLSGAPGLGLLHNPSM--WGRTLECIRDG 1023
            AE RPEE+ FC A       +    PG  A +  ++S  IL ++Y  +  A   AS  A+R  EL G +G     +++A       AA EL LEK+TW LL  +    +EDE I   I +              E  D      A  GP+A D  VL  +R RDA +RRTEA+V+WL+  AT T   A GLG         W  TLE +  G
Sbjct:  150 AEIRPEEKQFCEAFLELQALLNRLPPGARA-RPEQIS-DILQDMYGFAEGAEAAASDTADRLRELRG-SGAPAVAVAAA-------AAHELSLEKDTWALLLIMNGVDKEDEDILEGIRQREE-----------EGGDANDRSGAPRGPNASDEAVLVSMRARDAEFRRTEAVVEWLQG-ATHTRLNALGLGGGEGEGHLGWSDTLESLAVG 339
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11552.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9Z7_9PHAE1.650e-1435.55Nuclear pore complex protein n=1 Tax=Ectocarpus sp... [more]
D8LFJ1_ECTSI1.970e-1335.38Nuclear pore complex protein n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11552contigC-tenellus_contig11552:95..1862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFJ1
Preferred nameNUP107
PFAMsNup84_Nup100
Model size1023
Max annot lvl2759|Eukaryota
KEGG koko:K12816,ko:K14301
KEGG TC1.I.1
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00355,M00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000724,GO:0000725,GO:0000910,GO:0000972,GO:0000973,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006407,GO:0006606,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0006999,GO:0007049,GO:0007088,GO:0007110,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008585,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030154,GO:0030466,GO:0030703,GO:0031080,GO:0031081,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031990,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033206,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034501,GO:0034502,GO:0034504,GO:0034508,GO:0034605,GO:0034613,GO:0034622,GO:0034629,GO:0034641,GO:0035392,GO:0040029,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046907,GO:0046931,GO:0048137,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051029,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051292,GO:0051301,GO:0051321,GO:0051382,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0060255,GO:0060341,GO:0061458,GO:0061640,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071459,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090304,GO:0097064,GO:0097298,GO:0140013,GO:1900037,GO:1900180,GO:1900182,GO:1901360,GO:1902679,GO:1902680,GO:1903046,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1905818,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue3.23e-14
EggNOG OGsKOG1964@1|root,KOG1964@2759|Eukaryota
Descriptionposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
Cds size1023
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.5659993-CDS-C-tenellus_contig11552:94..6611680789183.5659993-CDS-C-tenellus_contig11552:94..661Choristocarpus tenellus KU2346CDSC-tenellus_contig11552 95..661 -
1680789183.5789165-CDS-C-tenellus_contig11552:1251..16581680789183.5789165-CDS-C-tenellus_contig11552:1251..1658Choristocarpus tenellus KU2346CDSC-tenellus_contig11552 1252..1658 -
1680789183.5881906-CDS-C-tenellus_contig11552:1813..18621680789183.5881906-CDS-C-tenellus_contig11552:1813..1862Choristocarpus tenellus KU2346CDSC-tenellus_contig11552 1814..1862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11552.1.1prot_C-tenellus_contig11552.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11552 95..1862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11552.1.1

>prot_C-tenellus_contig11552.1.1 ID=prot_C-tenellus_contig11552.1.1|Name=mRNA_C-tenellus_contig11552.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=341bp
GLDSEEDGEETSYLSAGRDAYERTAELLREVTEGVDSQYGTPYGNGHFNG
QSYSDDQYSTRLPEVVGGSLFPDPPQVQGFPFNPSDAGALFTGGLHGGGN
VVQLGSVWGPSGGSPDAGGISAGADKKAHPDAERRPEERAFCTALKTFNG
TVAGYQPGELAWKSCRLSFPILNELYEASSSAHKVASVAAERSLELHGGA
GGNRRILSSAMDDEVKLAAEELQLEKNTWKLLHQLTQAREEDEQIKVAIG
RDNAATMAATWASNGENRDGVMSLDAAPGPDAPDGEVLRRLRLRDAPYRR
TEAIVKWLEDTATETLSGAPGLGLLHNPSMWGRTLECIRDG
back to top

mRNA from alignment at C-tenellus_contig11552:95..1862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11552.1.1 ID=mRNA_C-tenellus_contig11552.1.1|Name=mRNA_C-tenellus_contig11552.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1768bp|location=Sequence derived from alignment at C-tenellus_contig11552:95..1862- (Choristocarpus tenellus KU2346)
GGCCTCGACAGTGAAGAAGATGGGGAGGAAACCTCCTACCTATCAGCAGG
TAATGGCGCCCATTAAACGGAGACTAAACACAGTTCCTTTGTTTACCTCT
TGACGTTGTGGGACAGACCATGAAAATCCTAGATCGTATTCTGTGTTTAC
GTTCTCATTTCTAATGACCATTCCTGTGTCCATCGCACTGCCACTCTCGC
ACAGGTCGAGATGCCTACGAACGCACGGCGGAGCTTCTGCGGGAGGTAAC
AGAGGGTGTAGACTCCCAGTATGGCACCCCTTACGGCAATGGACATTTCA
ACGGTCAGTCCTACAGCGACGACCAGTACAGCACTCGTCTCCCCGAGGTG
GTCGGTGGAAGCTTGTTCCCAGACCCGCCTCAGGTTCAGGGATTTCCCTT
CAACCCCAGTGATGCTGGGGCGTTGTTCACTGGGGGGCTTCATGGTGGCG
GTAACGTCGTGCAGTTGGGCAGTGTTTGGGGCCCTTCTGGCGGATCTCCA
GATGCTGGGGGTATCTCGGCTGGGGCAGATAAGAAGGCACATCCAGATGC
AGAACGCAGGCCAGAGGAGAGGGCATTCTGTACGGCACTGAAGACCTTCA
ATGGCACAGTGGTGAGCTTGACATGGCTGCAAGAGCAATGCACCCTCGAT
TTCGTCAAGACATCGACCCATGTAACACATCTTCCCCAGGAATGCGTGGT
CCTGGTCCTCTGTATGCCTCTCCTGTTGCATGGGAAACATTGTGATTGCA
TGTCAATCTTCTTTTTTGGGCAATGTTTGCTATGACTGACTAGCAACTTC
TTTACATTCCTCACCATCCCTTAGGTTCAATCTCGGTGTTGGGATGAATT
GTCAATATACGAAAATACAAAGCAATGTCCACTGTACTTTATCATGCAAT
GATCAGTCCCCCTTGTCCACATGTCCAAATGTCATTGTCCAGGTGCTCTT
ACGTAATATGCCATTTGTGATCTGGTTACACGATATAACTTTTTTTCCCT
ATGTGCAAGGACTACATTTTTTCGTATGCCAAAGCATTGTGTCAATCATG
GATATTGCACCCTCTGGCCAAGATTCCAACCCTTCCATTGACTCTAATGT
CCTTCAAAGAAATCTTCCTCGTTTTTCCCTTTTTACCAATTCTAACTCAG
CTCCAATAACCTTTCCTCTTCCACACTTATTGTCCTCTTGTTGCTGTGAA
GGCTGGCTACCAACCAGGAGAACTTGCCTGGAAGTCATGTAGGCTGTCAT
TCCCAATACTGAACGAGCTCTATGAGGCCTCCTCCTCCGCCCACAAAGTA
GCTTCCGTTGCAGCTGAGCGATCACTGGAGTTGCATGGTGGAGCTGGTGG
AAACCGACGCATCTTATCATCAGCAATGGATGATGAAGTGAAGTTGGCAG
CAGAGGAGCTCCAACTTGAAAAGAACACATGGAAGTTGCTCCATCAACTC
ACCCAGGCACGCGAAGAGGATGAACAAATTAAGGTGGCAATTGGGAGGGA
TAACGCTGCTACCATGGCAGCTACCTGGGCAAGTAACGGGGAGAATAGAG
ATGGGGTCATGTCCTTGGATGCTGCACCAGGTCCAGATGCTCCTGATGGG
GAAGTCCTACGAAGGCTGCGTCTCAGAGATGCACCATACCGCCGGACTGA
AGCCATTGTGAAATGGCTGGAGGACACAGCGACTGAGACCCTGTCAGGTG
CCCCTGGGCTTGGTCTCCTGCATAACCCGAGTATGTGGGGTCGTACATTA
GAATGCATCCGTGATGGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11552:95..1862-

>mRNA_C-tenellus_contig11552.1.1 ID=mRNA_C-tenellus_contig11552.1.1|Name=mRNA_C-tenellus_contig11552.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1023bp|location=Sequence derived from alignment at C-tenellus_contig11552:95..1862- (Choristocarpus tenellus KU2346)
GGCCTCGACAGTGAAGAAGATGGGGAGGAAACCTCCTACCTATCAGCAGG
TCGAGATGCCTACGAACGCACGGCGGAGCTTCTGCGGGAGGTAACAGAGG
GTGTAGACTCCCAGTATGGCACCCCTTACGGCAATGGACATTTCAACGGT
CAGTCCTACAGCGACGACCAGTACAGCACTCGTCTCCCCGAGGTGGTCGG
TGGAAGCTTGTTCCCAGACCCGCCTCAGGTTCAGGGATTTCCCTTCAACC
CCAGTGATGCTGGGGCGTTGTTCACTGGGGGGCTTCATGGTGGCGGTAAC
GTCGTGCAGTTGGGCAGTGTTTGGGGCCCTTCTGGCGGATCTCCAGATGC
TGGGGGTATCTCGGCTGGGGCAGATAAGAAGGCACATCCAGATGCAGAAC
GCAGGCCAGAGGAGAGGGCATTCTGTACGGCACTGAAGACCTTCAATGGC
ACAGTGGCTGGCTACCAACCAGGAGAACTTGCCTGGAAGTCATGTAGGCT
GTCATTCCCAATACTGAACGAGCTCTATGAGGCCTCCTCCTCCGCCCACA
AAGTAGCTTCCGTTGCAGCTGAGCGATCACTGGAGTTGCATGGTGGAGCT
GGTGGAAACCGACGCATCTTATCATCAGCAATGGATGATGAAGTGAAGTT
GGCAGCAGAGGAGCTCCAACTTGAAAAGAACACATGGAAGTTGCTCCATC
AACTCACCCAGGCACGCGAAGAGGATGAACAAATTAAGGTGGCAATTGGG
AGGGATAACGCTGCTACCATGGCAGCTACCTGGGCAAGTAACGGGGAGAA
TAGAGATGGGGTCATGTCCTTGGATGCTGCACCAGGTCCAGATGCTCCTG
ATGGGGAAGTCCTACGAAGGCTGCGTCTCAGAGATGCACCATACCGCCGG
ACTGAAGCCATTGTGAAATGGCTGGAGGACACAGCGACTGAGACCCTGTC
AGGTGCCCCTGGGCTTGGTCTCCTGCATAACCCGAGTATGTGGGGTCGTA
CATTAGAATGCATCCGTGATGGG
back to top