mRNA_C-tenellus_contig11545.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11545.1.1
Unique NamemRNA_C-tenellus_contig11545.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: A0A6H5L024_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L024_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.280e-56
Identity = 88/107 (82.24%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    1 ATLHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSKG 321
            ATLHIHRQSAYL+GRE+RVADIVVDHPSCSKQHAV+Q+R+FERVDEKEG TRRSVRPYIMDL+STNGT +N + ++ ARY+E+KEKDVVKFGTSTREYVLLHD+S G
Sbjct:  443 ATLHIHRQSAYLIGREKRVADIVVDHPSCSKQHAVVQFRMFERVDEKEGTTRRSVRPYIMDLDSTNGTLLNGEQIESARYIEMKEKDVVKFGTSTREYVLLHDKSNG 549          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: D8LEL7_ECTSI (FHA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL7_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 3.160e-56
Identity = 89/107 (83.18%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    1 ATLHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSKG 321
            ATLHIHRQSAYLVGRE+RVADIVVDHPSCSKQHAV+Q+R+FERVDEKEG TRRSVRPYIMDL+STNGT +N + ++ ARY+E+KEKDVVKFGTSTREYVLLHD+S G
Sbjct:  517 ATLHIHRQSAYLVGREKRVADIVVDHPSCSKQHAVVQFRMFERVDEKEGTTRRSVRPYIMDLDSTNGTLLNGEQIESARYIEMKEKDVVKFGTSTREYVLLHDKSNG 623          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: UPI00096B3FB5 (smad nuclear-interacting protein 1-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B3FB5)

HSP 1 Score: 154 bits (388), Expect = 2.590e-45
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    1 ATLHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSK 318
            +TL+IHRQSAYL+GR+R+V D   DHPSCSKQHAVIQYRL +   E +G   + V+PYI+DL+STNGTF+N+  +DP+RYVE+KEKDV+KFG STREYVLLH+ SK
Sbjct:   80 STLYIHRQSAYLIGRDRKVVDFPADHPSCSKQHAVIQYRLVDYTKE-DGRKGKKVKPYIIDLDSTNGTFVNNHKIDPSRYVEVKEKDVIKFGFSTREYVLLHESSK 184          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: E9I2J5_DAPPU (FHA domain-containing protein (Fragment) n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9I2J5_DAPPU)

HSP 1 Score: 150 bits (379), Expect = 1.370e-44
Identity = 70/105 (66.67%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    4 TLHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSK 318
            TL++HRQSAYL+GR+R+VADI +DHPSCSKQHA IQ+RL    D  +G   R+VRPYI+DLE+ NGTF+N+Q ++  RYVEL EKDVVKFG S+REYVLLH++SK
Sbjct:   33 TLYLHRQSAYLIGRDRKVADIPIDHPSCSKQHAAIQFRLVN-YDRPDGTAGRTVRPYIIDLEAANGTFVNNQKIESKRYVELFEKDVVKFGFSSREYVLLHEESK 136          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: A0A836CP18_9STRA (Smad nuclear interacting protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP18_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.540e-44
Identity = 70/106 (66.04%), Postives = 91/106 (85.85%), Query Frame = 1
Query:    4 TLHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSKG 321
            TL++HRQSAYL+GRER++ADI VDHPSCSKQHAV+Q+RL E V+E +  T R+VRPY++DLESTNGT++N + ++  RYVEL E D ++FG STREYVLLHD+S+G
Sbjct:  184 TLYVHRQSAYLIGRERKIADIPVDHPSCSKQHAVLQFRLKETVNEAKMETVRTVRPYVLDLESTNGTWLNKERIEAGRYVELMEGDCLRFGNSTREYVLLHDKSQG 289          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: A0A6J8CI05_MYTCO (SNIP1 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8CI05_MYTCO)

HSP 1 Score: 153 bits (386), Expect = 2.640e-43
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1
Query:    7 LHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQS 315
            LHIHR SAYL+GRERRVADI VDHPSCSKQHAV+Q+RL E  +  +G T R V PY++DL S NGTF+N+Q +DP RYVEL EKD+VKFG S+REYVLLHD++
Sbjct:  233 LHIHRSSAYLIGRERRVADIPVDHPSCSKQHAVLQFRLVE-FERSDGTTGRRVCPYVIDLNSANGTFVNNQKIDPERYVELMEKDMVKFGFSSREYVLLHDKT 334          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: UPI0018D69422 (FHA domain-containing protein DDL-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D69422)

HSP 1 Score: 154 bits (388), Expect = 3.180e-43
Identity = 74/106 (69.81%), Postives = 90/106 (84.91%), Query Frame = 1
Query:    7 LHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRL--FERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSK 318
            +HIHRQSAYL+GRER +AD+ +DHPSCSKQHAV+QYRL  +ER D   G T + VRPYI+DLES+NGT+IN+  ++P RY EL+EKDVVKFG STREYVLLHD+SK
Sbjct:  273 VHIHRQSAYLLGRERLIADLPIDHPSCSKQHAVLQYRLVKYERAD---GTTGKRVRPYIIDLESSNGTYINNNRIEPKRYYELQEKDVVKFGYSTREYVLLHDKSK 375          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: D5LG94_BRABE (SNIP1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=D5LG94_BRABE)

HSP 1 Score: 150 bits (379), Expect = 3.920e-43
Identity = 71/103 (68.93%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    7 LHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQS 315
            LHIHRQSAYL+GRER VADI +DHPSCSKQHA +QYRL +  ++ +G T R V+PYI+DLES NGT++N+Q ++ +RYVEL EKDVVKFG S+REYVLLHD S
Sbjct:  147 LHIHRQSAYLLGRERLVADIPIDHPSCSKQHAALQYRLVD-YEKPDGTTGRRVKPYIIDLESANGTYVNNQRIEASRYVELMEKDVVKFGYSSREYVLLHDTS 248          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: A0A1B6E2L4_9HEMI (FHA domain-containing protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E2L4_9HEMI)

HSP 1 Score: 151 bits (382), Expect = 4.260e-43
Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    4 TLHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSK 318
            TLH+HRQSAYL+GRER++ADI VDHPSCSKQHAV+QYRL     E  G T + VRPYI+DLES NGT++N+Q +D  +Y+EL EKDV+KFG S+R+YVLLH+ SK
Sbjct:  197 TLHLHRQSAYLIGRERKIADIPVDHPSCSKQHAVLQYRLVTFTREN-GTTGKRVRPYIIDLESANGTYVNNQKIDSKKYIELLEKDVIKFGYSSRDYVLLHEHSK 300          
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Match: A0A6P5GD77_ANACO (FHA domain-containing protein DDL-like isoform X4 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GD77_ANACO)

HSP 1 Score: 149 bits (377), Expect = 4.830e-43
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    7 LHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGVTRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVLLHDQSKG 321
            L++HRQS YL GRERR+ADI  DHPSCSKQHAV+QYRL E+ ++ +G+  + VRPY+MDL+STNGTFIN   ++P RY EL EKD VKFG S+REYVLLH+ S G
Sbjct:  143 LYVHRQSCYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEK-EQLDGLMSKQVRPYLMDLDSTNGTFINDNRIEPRRYYELFEKDTVKFGNSSREYVLLHENSAG 246          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11545.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L024_9PHAE1.280e-5682.24FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEL7_ECTSI3.160e-5683.18FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI00096B3FB52.590e-4566.98smad nuclear-interacting protein 1-like n=1 Tax=Am... [more]
E9I2J5_DAPPU1.370e-4466.67FHA domain-containing protein (Fragment) n=1 Tax=D... [more]
A0A836CP18_9STRA2.540e-4466.04Smad nuclear interacting protein-like protein n=1 ... [more]
A0A6J8CI05_MYTCO2.640e-4369.90SNIP1 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8CI05_... [more]
UPI0018D694223.180e-4369.81FHA domain-containing protein DDL-like n=1 Tax=Pat... [more]
D5LG94_BRABE3.920e-4368.93SNIP1 n=1 Tax=Branchiostoma belcheri TaxID=7741 Re... [more]
A0A1B6E2L4_9HEMI4.260e-4366.67FHA domain-containing protein n=1 Tax=Clastoptera ... [more]
A0A6P5GD77_ANACO4.830e-4365.71FHA domain-containing protein DDL-like isoform X4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11545contigC-tenellus_contig11545:466..2309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LEL7
Preferred nameSNIP1
PFAMsFHA
Model size324
Max annot lvl2759|Eukaryota
KEGG koko:K04459,ko:K13108,ko:K13525,ko:K17491
KEGG TC3.A.16.1
KEGG Pathwayko04010,ko04141,ko04212,ko04922,ko05134,map04010,map04141,map04212,map04922,map05134
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007249,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008380,GO:0009507,GO:0009536,GO:0009889,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019219,GO:0019222,GO:0023052,GO:0031047,GO:0031050,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0035194,GO:0035195,GO:0035196,GO:0035556,GO:0040008,GO:0040029,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0048638,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051235,GO:0051236,GO:0051237,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070274,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071407,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1903506,GO:2000112,GO:2001141
Exons3
Evalue5.18e-57
EggNOG OGsKOG1882@1|root,KOG1882@2759|Eukaryota
EC3.1.3.16,3.1.3.48
Descriptionproduction of miRNAs involved in gene silencing by miRNA
Cds size324
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03041,ko03400,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.247646-CDS-C-tenellus_contig11545:465..6321680789183.247646-CDS-C-tenellus_contig11545:465..632Choristocarpus tenellus KU2346CDSC-tenellus_contig11545 466..632 +
1680789183.2643883-CDS-C-tenellus_contig11545:1292..13771680789183.2643883-CDS-C-tenellus_contig11545:1292..1377Choristocarpus tenellus KU2346CDSC-tenellus_contig11545 1293..1377 +
1680789183.2734287-CDS-C-tenellus_contig11545:2237..23091680789183.2734287-CDS-C-tenellus_contig11545:2237..2309Choristocarpus tenellus KU2346CDSC-tenellus_contig11545 2238..2309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11545.1.1prot_C-tenellus_contig11545.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11545 466..2309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11545.1.1

>prot_C-tenellus_contig11545.1.1 ID=prot_C-tenellus_contig11545.1.1|Name=mRNA_C-tenellus_contig11545.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp
ATLHIHRQSAYLVGRERRVADIVVDHPSCSKQHAVIQYRLFERVDEKEGV
TRRSVRPYIMDLESTNGTFINSQPVDPARYVELKEKDVVKFGTSTREYVL
LHDQSKG*
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mRNA from alignment at C-tenellus_contig11545:466..2309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11545.1.1 ID=mRNA_C-tenellus_contig11545.1.1|Name=mRNA_C-tenellus_contig11545.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1844bp|location=Sequence derived from alignment at C-tenellus_contig11545:466..2309+ (Choristocarpus tenellus KU2346)
GCAACACTCCACATCCACCGTCAAAGCGCCTACCTGGTGGGTCGTGAGAG GCGAGTGGCAGACATTGTTGTGGACCACCCCAGCTGTTCCAAGCAACACG CTGTGATTCAATACCGTCTGTTTGAGAGGGTGGATGAAAAGGAAGGCGTT ACTCGGAGGAGTGTGAGGTGTGTAAAAAAAAAAATCCTGGCAGTTCTATC TACACGGTCGGGGAGGGCAGGGAGATGTTAGGTGGAGTTTAAAAACACCT GTGAGGGGTGTGGGCGTGTTGCATGTTCATGTTTGAGTTGAGGCAAGCGC TTGGTCCACATCTTGTTTTGGTCTGTCTTGTTGAGTTTTTGAGTGTGATG TTGTGTTGGGCATGTGTATGTGTATGTGTCCATGAATATCAAGAATGACT TTGATATGATTATGGTAGGGTATGTGTATGAGAAATGATATGTAACAGGG AAAATGAACAGACCAGGTGAGGACCTTTCCTTCCCATTGGCATATAGAGG AACATCCACTGGGAAGCGCCTCTTGGACATCTACTGCGTATGTGTAGAGA CCATAGACCATACCCCCAAACTTATTTCACGGCTCACATGGTGCCCAAGA ATATCTCCTTCACAATGTTACCTGAAGACCTCCAAGTTCCCCAGTCAATT GCACATTAATCCTAGGTACTTCCCCATCCCTTGTCTACACCAGACCATGT TACTTAAACTGCTATGCTTAAATCTCCACCACCTCCCTCCCAGATTTTTC CAAGTCTCCCTTATAACAGTAATTTTGACCCTTCAAAATCTACGAAGATG GTAACCCTAACCCTAACCCTATATCAGGCCGTACATAATGGATCTGGAAA GCACCAACGGAACTTTTATTAACTCACAGCCTGTTGATCCTGCAAGATAC GTGGAGCTGAAGGTGAATTTTAAAAGAACATGGTACCATTGTAGCAGAAA GGTTGTGGGAGTAGAGGATGAGGTAGCTAGGGTCAAGGGGGTAAGAGTGT GGGTGGTCGAGAGACTCTTTGAATCTGCTGCACCTCCAGGCTTTGTGGAT TGGGTACATCGATATTGGATGGCGTTTAGATCTAGGATTGTTCTGGTTTA TTGCAAGTCGTAAGTGTGTGTAGTAAGTATCAGACCCAAACATGTGGTAT CACTACAAACATTATCATTTTACTGTGCAGAGGAATGGATCGCGAGTCTT TTGTGCTAGAGCTCACGATCCATGCGGAGCATGTGACACACTGATGATAC ATCTCTGCCATTACTTGCTGCAGCCGAGGAATGGTGTTGTTTGCCTCTGG AAAACCCCTCAACCCAAACATTGATAGGCAGTAAGCAGTATGTCTTTTCC ATTTCTTGCTCTTTTGTTTGTGCTGCTGCATTAAAATTTACTTTACTTTA TTTGCACCTGTAAAGTACTTTTTGAACTGTACTTTGAACTGTAGAGGGTC CATTCAGCTTGATGATTCATGTCATTGTTTTGTTGTATCGTGGGTGAGGC GATGAAGACATGACTACTATCACCAAAGACTATTATTTGCAGGACTCCTA CCTTGTCCGGAGAGGGTCCAAATGCTGCCATTGTGCTATTGATGTATCCT GGACCTGAGATATCCTGCATGGAGTAATTCAAAGGGTAACTAAATCTGTT CTCTAAATCGATGCAGGACTTGGTTAGTCCTGTAATCAAATGTTCAAATA TTGTTATTGCTTACGTGTGCGCTTCACACTCCCAATACCCTTCACCCCCT CCTGCCCTGCTTCCTGTATCAGGAGAAAGATGTGGTAAAGTTTGGGACAA GCACGAGAGAGTATGTGCTGCTTCATGACCAGTCCAAGGGCTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11545:466..2309+

>mRNA_C-tenellus_contig11545.1.1 ID=mRNA_C-tenellus_contig11545.1.1|Name=mRNA_C-tenellus_contig11545.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig11545:466..2309+ (Choristocarpus tenellus KU2346)
GCAACACTCCACATCCACCGTCAAAGCGCCTACCTGGTGGGTCGTGAGAG
GCGAGTGGCAGACATTGTTGTGGACCACCCCAGCTGTTCCAAGCAACACG
CTGTGATTCAATACCGTCTGTTTGAGAGGGTGGATGAAAAGGAAGGCGTT
ACTCGGAGGAGTGTGAGGCCGTACATAATGGATCTGGAAAGCACCAACGG
AACTTTTATTAACTCACAGCCTGTTGATCCTGCAAGATACGTGGAGCTGA
AGGAGAAAGATGTGGTAAAGTTTGGGACAAGCACGAGAGAGTATGTGCTG
CTTCATGACCAGTCCAAGGGCTGA
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