mRNA_C-tenellus_contig11544.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11544.1.2
Unique NamemRNA_C-tenellus_contig11544.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A7S1XAZ5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XAZ5_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 1.990e-37
Identity = 83/218 (38.07%), Postives = 120/218 (55.05%), Query Frame = 3
Query:   18 HHYMGDNALNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSVPLLSYRFTFEY 671
            H  + +N LN + F  T GF+VK N +G++  RSD  L  L+ +FD  R   ANAWV+N+L+C+  E           +AV  H+D+T+G  S    LAH VNVLY S+P+DM GG LE++ YN  +  L      +   + +N  +PPD  + PVEN +V+FRGD+ H+V GY+  + G                R+S+V+EQY      YRFT  +
Sbjct:   69 HPLITNNTLNEQGFGNTRGFLVKMNEDGLTDFRSDERLTCLTRFFDSARLTEANAWVMNLLICDSTEYSRRN------VAVGLHLDDTIGINSIWKHLAHQVNVLYASVPDDMVGGELEVWSYNHTQEAL-----QWDDLSEVNGTVPPDELITPVENTMVAFRGDSWHQVRGYKAPHRG---------------LRISLVMEQYIKSPAHYRFTHRF 260          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A096P8I2_OSTTA (Oxoglutarate/iron-dependent dioxygenase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8I2_OSTTA)

HSP 1 Score: 143 bits (361), Expect = 1.510e-35
Identity = 84/210 (40.00%), Postives = 115/210 (54.76%), Query Frame = 3
Query:   42 LNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSVPLLSYRFTFEY 671
            LN+  F KT GFVVKFN EG+ + R++P     +  FDR+R P ANA+V+N+LLC   + G+      D+L+V  H+D T+G  SR ++ AH V+VLY S+P DM GG LE+Y Y                T   +    PD  V+P EN++V+FRGD  H+V  YRT +  E               RVS+VLEQY +   +Y  T  Y
Sbjct:  112 LNSAGFSKTRGFVVKFNLEGVEKFRTNPDYACFTPIFDRLRLPDANAFVMNILLC---QLGDYDAYNADELSVGIHLDTTVGIYSRHTYAAHQVSVLYNSVPSDMEGGELEVYEYG---------------TGHPDVSKDPDEKVRPKENMMVTFRGDAYHQVRSYRTKSGAE---------------RVSLVLEQYKIDKAAYGKTMRY 288          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A454XPC7_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XPC7_OSTTA)

HSP 1 Score: 142 bits (359), Expect = 4.150e-35
Identity = 87/206 (42.23%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   21 HYMGDNALNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSV 638
            H  G+  LN E F KT GFV+KFN +G+ R RS        + FDR+R PL NA+V+NVLLC   +       G   +AV  H+D+T+G  S+  F+AH V+VLYVS+PEDM GG+LE          LFPY     P       + P   V+P ENL+ +FRGD  HRV  YRT +               K  RVS+VLEQY +
Sbjct:  121 HVAGE--LNGETFGKTRGFVLKFNEDGVERFRSKKEYACFVDVFDRLRAPLTNAFVMNVLLCELQDYSAYDANG---MAVGLHLDDTVGIFSKHEFVAHQVSVLYVSVPEDMEGGQLE----------LFPYGNGSTPEN-----VEPTEAVEPKENLMATFRGDAFHRVRAYRTRS---------------KRERVSLVLEQYHI 291          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A4S818_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S818_OSTLU)

HSP 1 Score: 136 bits (343), Expect = 1.300e-33
Identity = 83/210 (39.52%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   42 LNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSVPLLSYRFTFEY 671
            LN   F KT GFVVKFN EG+ + ++ P     ++ FD +R P ANA+V+N+LLC   E G+      ++L+V  H+D T+G  SR  F+AH V+VLY S+P DM GG LE          LFPY   Y  T        P+  ++P EN+LV+FRGD  H+V  Y+T +  E               RVS+VLEQY +   +Y  T  +
Sbjct:   54 LNDAGFSKTRGFVVKFNLEGVDKFKASPDYECFASVFDELRLPDANAFVMNILLC---ELGDYDAYNAEELSVGLHLDTTVGIYSRHMFIAHQVSVLYNSVPNDMVGGELE----------LFPYGDGYPDTG-----AAPEKKIRPKENMLVNFRGDAFHQVRSYKTRSGSE---------------RVSLVLEQYVIDDDAYGKTMRF 230          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A7R9T418_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T418_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 6.880e-33
Identity = 83/210 (39.52%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   42 LNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSVPLLSYRFTFEY 671
            LN   F KT GFVVKFN EG+ + ++ P     ++ FD +R P ANA+V+N+LLC   E G+      ++L+V  H+D T+G  SR  F+AH V+VLY S+P DM GG LE          LFPY   Y  T        P+  ++P EN+LV+FRGD  H+V  Y+T +  E               RVS+VLEQY +   +Y  T  +
Sbjct:  122 LNDAGFSKTRGFVVKFNLEGVDKFKASPDYECFASVFDELRLPDANAFVMNILLC---ELGDYDAYNAEELSVGLHLDTTVGIYSRHMFIAHQVSVLYNSVPNDMVGGELE----------LFPYGDGYPDTG-----AAPEKKIRPKENMLVNFRGDAFHQVRSYKTRSGSE---------------RVSLVLEQYVIDDDAYGKTMRF 298          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A5J4YPS6_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YPS6_PORPP)

HSP 1 Score: 130 bits (327), Expect = 1.160e-30
Identity = 82/215 (38.14%), Postives = 110/215 (51.16%), Query Frame = 3
Query:   30 GDNALNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRD-SFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSVPLLSYRFTFEY 671
            G+N LN  NF+ T GF VKFN +G+ + + DPA+  L  YF+R      NAWV+NVL+C          E + +++V  HVD T+G       FLAHVV+VLYVS+P DM GG L ++ Y               P+     +   D  + P EN  VSFRGD  H V G++             DV      R+S+V+EQY +P L YR T  Y
Sbjct:  112 GENVLNKRNFKGTYGFAVKFNNDGVQQFKDDPAMACLVPYFERAVRNDTNAWVVNVLVCE---------ETQAEVSVGIHVDNTVGIHVPVLRFLAHVVDVLYVSIPRDMQGGSLVIWNYG------------SGPSIVAPTIDSADREIVPRENHRVSFRGDAFHTVRGFQIPE----------DVPKQDRLRISLVIEQYKIPSLFYRRTDTY 295          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A7S0WM43_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WM43_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 4.400e-29
Identity = 78/199 (39.20%), Postives = 104/199 (52.26%), Query Frame = 3
Query:   42 LNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSV 638
            LN   F KT GFVVKFN EG+   ++          FD +R P ANA+V+N+LLC   E G+      D+L+V  H+D T+G  SR  F+AH V+VLY S+P DM GG LE++ Y     +L                  P+  + P EN LV+FRGD  H+V+ Y T              + GK R VS+VLEQY +
Sbjct:  123 LNDNGFSKTRGFVVKFNTEGVDEFKAKEEYACFREVFDDIRLPDANAFVMNILLC---ELGDYDQYNADELSVGLHLDTTVGIYSRHMFIAHQVSVLYASVPNDMRGGALEVFPYGDGDPRLGA---------------TPEEVIAPKENTLVTFRGDAFHQVKSYST--------------RTGKER-VSLVLEQYKI 288          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A7S3XH79_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XH79_HETAK)

HSP 1 Score: 108 bits (270), Expect = 3.860e-23
Identity = 74/196 (37.76%), Postives = 98/196 (50.00%), Query Frame = 3
Query:   66 TEGFVVKFNREGISRLRSDPA---LGALSNYFDRVRDPLANAWVLNVLLCNPVEEGEG-KGEGEDDLAVSPHVDETLGTRSRD-SFLAHVVNVLYVSLPEDMTGGRLEMYGY-----NWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVL 623
            T G VV FNR+G++  R   A   +G L+ +FD VR P ANAWV+NVL+ +P  +  G K  G+ D AV+ H+D  L   +R  +FLAH  +VLYVS+P DM GG L +Y Y      W               AW    +      +P EN L +FRGD  H V  Y T   G              +RRV++VL
Sbjct:  101 TRGQVVMFNRDGVTEFREKAAAEEMGYLATFFDAVRHPAANAWVVNVLVIDPKPKANGVKVFGDIDEAVATHLDGNLAVDARQHTFLAHQTDVLYVSVPADMEGGALSVYPYASGGPRW--------------KAWYKEQVK-----RPAENTLATFRGDAYHGVSAYYTDEEG--------------ARRVTLVL 263          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A7S4EST4_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EST4_CHRCT)

HSP 1 Score: 85.1 bits (209), Expect = 1.390e-15
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   39 ALNAENFQKTEGFVVKFNREGISRLRSDPALGA-----LSNYFDRVR-DPLANAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYN 389
            ALNA NF  T GFV+KFN EG+ +LR DP+        L  + D    DP ANA+VLNVL+  P E+           AV  H+D+T+   S    LA+ V+VLY+S+PEDM GG L ++ + 
Sbjct:   49 ALNALNFNATRGFVLKFNSEGLKKLR-DPSFDDGKYEFLMPFLDLANTDPEANAFVLNVLIVPPTEDPNRP-------AVGAHLDDTIALDSARQLLANTVSVLYLSVPEDMQGGELLLWQHK 163          
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Match: A0A7R9YW01_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YW01_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 4.220e-15
Identity = 68/211 (32.23%), Postives = 95/211 (45.02%), Query Frame = 3
Query:   36 NALNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRV-RDPLANAWVLNVLLCNPVEEGEGKGEGEDDL--AVSPHVDETL-------GTRSRDSFLAHVVNVLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWVKPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLEQYSV 638
            N LN +NF  T G ++ FN EG+   RS P    +  + D + R   ANA+V+N+L  +P   G G          A   H+D+TL          SR +F+AH   V Y+ +P DM GG L+M  Y                      +      + P EN LV+FRGDT+H V+ +R+       D G          RVS+V+EQY V
Sbjct:   96 NNLNPKNFGPTSGVLLSFNLEGLEVARSIPRYAPIVRFVDAIPRVDGANAFVVNLLRASP-SAGPGSAARRKTARKAAGEHIDDTLRQFLRQEAFWSRSNFIAHRTTVGYLQVPPDMQGGLLKMTAY----------------------VTDDQVAILPKENALVTFRGDTLHGVQSFRS-------DSGLA--------RVSIVVEQYKV 268          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11544.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S1XAZ5_9CHLO1.990e-3738.07Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A096P8I2_OSTTA1.510e-3540.00Oxoglutarate/iron-dependent dioxygenase n=2 Tax=Os... [more]
A0A454XPC7_OSTTA4.150e-3542.23Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A4S818_OSTLU1.300e-3339.52Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A7R9T418_9CHLO6.880e-3339.52Hypothetical protein n=1 Tax=Ostreococcus sp. 'luc... [more]
A0A5J4YPS6_PORPP1.160e-3038.14Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7S0WM43_9CHLO4.400e-2939.20Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A7S3XH79_HETAK3.860e-2337.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4EST4_CHRCT1.390e-1543.09Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7R9YW01_9CHLO4.220e-1532.23Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11544contigC-tenellus_contig11544:1950..4763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.A0A096P8I2
Model size1443
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.72e-39
EggNOG OGs2D3F1@1|root,2SRBK@2759|Eukaryota
Cds size696
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.158976-UTR-C-tenellus_contig11544:1949..26701680789183.158976-UTR-C-tenellus_contig11544:1949..2670Choristocarpus tenellus KU2346UTRC-tenellus_contig11544 1950..2670 -
1680789183.215217-UTR-C-tenellus_contig11544:4737..47631680789183.215217-UTR-C-tenellus_contig11544:4737..4763Choristocarpus tenellus KU2346UTRC-tenellus_contig11544 4738..4763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.1747053-CDS-C-tenellus_contig11544:2670..30721680789183.1747053-CDS-C-tenellus_contig11544:2670..3072Choristocarpus tenellus KU2346CDSC-tenellus_contig11544 2671..3072 -
1680789183.184839-CDS-C-tenellus_contig11544:3776..40341680789183.184839-CDS-C-tenellus_contig11544:3776..4034Choristocarpus tenellus KU2346CDSC-tenellus_contig11544 3777..4034 -
1680789183.2034187-CDS-C-tenellus_contig11544:4701..47371680789183.2034187-CDS-C-tenellus_contig11544:4701..4737Choristocarpus tenellus KU2346CDSC-tenellus_contig11544 4702..4737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11544.1.2prot_C-tenellus_contig11544.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11544 2671..4737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11544.1.2

>prot_C-tenellus_contig11544.1.2 ID=prot_C-tenellus_contig11544.1.2|Name=mRNA_C-tenellus_contig11544.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=232bp
MGDNALNAENFQKTEGFVVKFNREGISRLRSDPALGALSNYFDRVRDPLA
NAWVLNVLLCNPVEEGEGKGEGEDDLAVSPHVDETLGTRSRDSFLAHVVN
VLYVSLPEDMTGGRLEMYGYNWLRVKLFPYLLTYLPTAWLNRLLPPDAWV
KPVENLLVSFRGDTIHRVEGYRTGNNGEGGDEGKGDVKYGKSRRVSVVLE
QYSVPLLSYRFTFEYDLSSGNADHYSRGVKA*
back to top

mRNA from alignment at C-tenellus_contig11544:1950..4763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11544.1.2 ID=mRNA_C-tenellus_contig11544.1.2|Name=mRNA_C-tenellus_contig11544.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2814bp|location=Sequence derived from alignment at C-tenellus_contig11544:1950..4763- (Choristocarpus tenellus KU2346)
AGGAGGAGGTCGATGGACACCACTACATGGGCGACAATGCCCTCAATGCG GAAAACTTCCAGGTGACATTTGTGCGGTGGAGTCACTATGTACTTCTGTG TGGGCGGTGTTCATCGTTGATACAATGCACAAATCAAGTCCCTATGCTGA TTCCTGCTGTAGTTTTTCAAACTTGGGTATTCTGCTTTTGTGCTCCAGCT TTCACCACGTGCAAGAGTTGATAAAGTATCCTTAACTAACCTCCTCCTCA CTGCTGCTGAAGCACTCAGGGGAACCCCTCTGTCTCGGGGAACCTCCATG GTCATACTTCTTCCACTTCTTCAAACATTTTTTTTTTGCGGACAGGTTAG GGTTAGAGTTAGGGTTAGATTCTTGGAAATGAGTTGTGAAAAGTAAACTG ATGGATTCTTGAGAGGTTGTGGGTCCCCAGTGCACATTATACTCCTCCAC CACCTTTTCTAGATTGTTTCCTTAGCTGCATATGGATATTTTGCACACAC AAGTTAGGGTTATATGTAGGGTTAAGGTTTTTGAAAATGCATGCAAAAAT ATGAAAAAAAACCAATGGGGGTTCCTCTGTGCACTCCACCACTCTACACC CTAGACAGGTGAGTGCTCTGACTGAAATGGGACTTGTCTCCTCCCCCTCC TCCCCCTCCTCCCCCTCCTCCCCTTCATCCCCTTCCTCCCCCTCTGCTTC ACTATTTGATGTGCCATTGAGGTGTACAGAAGACTGAAGGATTTGTGGTG AAGTTTAACAGAGAGGGTATTTCTCGATTGAGATCTGATCCAGCCCTTGG AGCACTATCTAATTACTTTGATAGGGTGAGGGACCCCCTGGCTAATGCCT GGGTCCTCAATGTACTCCTGTGCAATCCGGTTGAGGAGGGAGAGGGGAAG GGGGAGGGGGAGGACGACCTCGCAGTGTCTCCCCATGTGGATGAGACACT GGGTACGAGGTCTAGAGATTCGTTTCTTGCTCATGTGGTGAGTTGGGTCT GATGTGATGTGATTGGAGCATGCATTGTCTGTGATTGTGAGATGCATGAT TTGATTTTTTGTGCATGTGTGTTTACAAAGTTTGTAAGGGTACAGCATGG TTTGTGCAACCTATGCATATGGATAGGATCTTACCATTACAAGTAGCAAT ATAGGGGATGTTTGTCAGCCTACTTAAGTGCCTGTGCATCTCTTTTTTTT TCTATGATTGGATCGGTATGATATTTTAGCAATAGTTGGACTTGACAGAA CCCTCTTGCTTGCTTGGTTAGTATAACACCATTGCAACTGTTGTTCCCTT GTGCATTGGTGTACATTCCAGTTTGAGAGGTGTGAATGAGAGTAGCCTAA GTGGTGCTCAATTAGTGAGAGGGGACAAGAGCAGCGGAGCCTCCTATTTT AGCTGCATGGGCTGTTTTATTGAAGGGACGGGGAAAGAACTGTTTTGTTC TAATTTATAGAGAGCACCTTCAGAGAGAAAGAGTCCCCCAACATTGCTGT AATCGGGAGACAAGTTAAGGTAGGGGAGATCATTGTCCTTTGACTTTCTT CCTCCTCATCATCCAGCCTGTCCCACCCTCAACCATTCTAACTTTCACTA CATACTTGTTCTCAGCCTGTGTTGATTGCAATAAAATGTGAACACACAGT TACAGCACTCTGCCTCGCACTTGTGTTAAATTTCCCTCTAGGTAAATGTC CTTTATGTGTCTCTACCGGAGGATATGACTGGGGGTCGCCTGGAGATGTA CGGGTACAACTGGCTAAGGGTTAAGCTCTTTCCCTATTTGCTTACTTACC TCCCAACAGCTTGGTTGAACCGTCTCCTGCCCCCGGATGCTTGGGTCAAA CCGGTTGAGAACCTTCTTGTATCTTTCCGAGGGGACACCATACATAGGGT GGAAGGATACCGCACTGGGAACAATGGTGAAGGTGGGGATGAGGGCAAGG GCGATGTAAAATATGGCAAGAGCAGGAGAGTAAGTGTCGTGCTGGAGCAG TACAGCGTACCCCTGCTGTCATACCGCTTCACTTTTGAGTATGACCTGTC TTCGGGAAATGCTGATCATTATTCCAGAGGGGTCAAGGCGTAACAGTGCA CTCCACAACCCCGATCAAAAGAGTTGAGGTCTTGTCCTGTGTTATGATGC CCTTTCATTTTGGTTGATGATCCACACATGAGGCACTGTGGGCACTGTAT ATATATATATTTAATAGTGTACTCCCCCTTCACCTTACTCCACTCTGCTG TGCTTTTCAAGTCGAGAGATGCCTTCCTAAGTGGTGCTCATTCGGTATGT GCAAGCAGAGTCTCTGGATCCTTGTGTGCACTGTAATTGTACACAATTGA TAAACTATGTGTCTATGTTTTATGTGCACATTGACTACTATATGTACTTG AAATAGGTTGGATGCAATTTTGTAAAGCATTCATTGTGTTGAGAGACCAC TATTATGAGCATTCAGCAGGACCGCCTTTCTGCTAGCCTATGCCCACCAG CAGATGTTGCAGTATGTCCTGACCAAGAGCCTTGCATGAGGAGATGGGAT ACTATTTGCTCATGTTGAATGACCTAGTGTTATCCTTACGTTGTATGTGC TGATACAAGTATATAACATAGTTTTGATGTACGTTTGGTTTGGTACAAGT TGTAACATGCAAATGGTATGATAAACAACAGTATGATGAGTCAGTGTATG TTCACCATGTAACTCAACCAGCAGCTTTGGGCGACAAGCCTTATATGCGC TAAGCCTTACAGCAGTTCGTCACGTACTGCGGTGGACTTCAAACAGATAA TTATTTATTGTTCG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11544:1950..4763-

>mRNA_C-tenellus_contig11544.1.2 ID=mRNA_C-tenellus_contig11544.1.2|Name=mRNA_C-tenellus_contig11544.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=696bp|location=Sequence derived from alignment at C-tenellus_contig11544:1950..4763- (Choristocarpus tenellus KU2346)
ATGGGCGACAATGCCCTCAATGCGGAAAACTTCCAGAAGACTGAAGGATT
TGTGGTGAAGTTTAACAGAGAGGGTATTTCTCGATTGAGATCTGATCCAG
CCCTTGGAGCACTATCTAATTACTTTGATAGGGTGAGGGACCCCCTGGCT
AATGCCTGGGTCCTCAATGTACTCCTGTGCAATCCGGTTGAGGAGGGAGA
GGGGAAGGGGGAGGGGGAGGACGACCTCGCAGTGTCTCCCCATGTGGATG
AGACACTGGGTACGAGGTCTAGAGATTCGTTTCTTGCTCATGTGGTAAAT
GTCCTTTATGTGTCTCTACCGGAGGATATGACTGGGGGTCGCCTGGAGAT
GTACGGGTACAACTGGCTAAGGGTTAAGCTCTTTCCCTATTTGCTTACTT
ACCTCCCAACAGCTTGGTTGAACCGTCTCCTGCCCCCGGATGCTTGGGTC
AAACCGGTTGAGAACCTTCTTGTATCTTTCCGAGGGGACACCATACATAG
GGTGGAAGGATACCGCACTGGGAACAATGGTGAAGGTGGGGATGAGGGCA
AGGGCGATGTAAAATATGGCAAGAGCAGGAGAGTAAGTGTCGTGCTGGAG
CAGTACAGCGTACCCCTGCTGTCATACCGCTTCACTTTTGAGTATGACCT
GTCTTCGGGAAATGCTGATCATTATTCCAGAGGGGTCAAGGCGTAA
back to top