mRNA_C-tenellus_contig11537.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11537.1.1
Unique NamemRNA_C-tenellus_contig11537.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11537.1.1 vs. uniprot
Match: D8LIA7_ECTSI (Lissencephaly type-1-like homology (LisH) motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIA7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.320e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2 
Query:   89 MEIDGPFVKVPCECLNQVFRKTRKTVTQEITAILRGVQDLGA------EKRGDDETEGVRKNEGGVLSGQHTEEDQAAALTSAEAKLDELLDRLAKLRSLVSPFEKDLKR 400
            ME +GPF+KVP EC++QVFRKTRKTVT E+TAI++ +  L A      +  GDD   G   + GG   G             A AKL EL+DRL  L++      ++ K+
Sbjct:    1 METEGPFIKVPIECVSQVFRKTRKTVTSELTAIIKEISSLEAAGAAAGDTDGDDTRRGETADSGGEGEG------------DASAKLGELMDRLTNLKATAQEAGREEKK 98
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11537.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIA7_ECTSI4.320e-1240.91Lissencephaly type-1-like homology (LisH) motif-co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11537contigC-tenellus_contig11537:3665..4771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIA7
Preferred nameMAEA
PFAMsCLTH
Model size681
Max annot lvl2759|Eukaryota
KEGG koko:K03245,ko:K14399,ko:K18624
KEGG Pathwayko03013,ko03015,map03013,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005938,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007155,GO:0007275,GO:0007346,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0010941,GO:0015629,GO:0015630,GO:0016020,GO:0016021,GO:0016043,GO:0016363,GO:0019222,GO:0019538,GO:0019941,GO:0022610,GO:0030097,GO:0030099,GO:0030154,GO:0030163,GO:0030218,GO:0030863,GO:0030864,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032153,GO:0032155,GO:0032501,GO:0032502,GO:0032991,GO:0033032,GO:0033033,GO:0034101,GO:0034399,GO:0034657,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043353,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0045721,GO:0045912,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048822,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0060548,GO:0061515,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0070013,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0099568,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue3.66e-14
EggNOG OGsKOG0396@1|root,KOG0396@2759|Eukaryota
EC2.7.1.78
Descriptionnegative regulation of gluconeogenesis
Cds size333
COG categoryS
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.9349844-UTR-C-tenellus_contig11537:3664..37401680789182.9349844-UTR-C-tenellus_contig11537:3664..3740Choristocarpus tenellus KU2346UTRC-tenellus_contig11537 3665..3740 +
1680789182.976624-UTR-C-tenellus_contig11537:4499..47711680789182.976624-UTR-C-tenellus_contig11537:4499..4771Choristocarpus tenellus KU2346UTRC-tenellus_contig11537 4500..4771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.9535098-CDS-C-tenellus_contig11537:3740..38271680789182.9535098-CDS-C-tenellus_contig11537:3740..3827Choristocarpus tenellus KU2346CDSC-tenellus_contig11537 3741..3827 +
1680789182.9658968-CDS-C-tenellus_contig11537:4253..44991680789182.9658968-CDS-C-tenellus_contig11537:4253..4499Choristocarpus tenellus KU2346CDSC-tenellus_contig11537 4254..4499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11537.1.1prot_C-tenellus_contig11537.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11537 3741..4499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11537.1.1

>prot_C-tenellus_contig11537.1.1 ID=prot_C-tenellus_contig11537.1.1|Name=mRNA_C-tenellus_contig11537.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MAAGMEIDGPFVKVPCECLNQVFRKTRKTVTQEITAILRGVQDLGAEKRG
DDETEGVRKNEGGVLSGQHTEEDQAAALTSAEAKLDELLDRLAKLRSLVS
PFEKDLKRIY*
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mRNA from alignment at C-tenellus_contig11537:3665..4771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11537.1.1 ID=mRNA_C-tenellus_contig11537.1.1|Name=mRNA_C-tenellus_contig11537.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1107bp|location=Sequence derived from alignment at C-tenellus_contig11537:3665..4771+ (Choristocarpus tenellus KU2346)
CACAAACCAGACTTCAACCACTACCACCTTCAGACGGCATGCAAGGTTAG
AGTGACGGACTGAAACAGTATATATAATGGCAGCAGGCATGGAAATAGAT
GGACCCTTCGTCAAGGTCCCTTGCGAGTGCCTCAATCAGGTCTTCCGCAA
GACACGAAAGACGGTGAGACAATTTCCCTGTTTGAATCCAAATTGCTCCC
CAGTATGCTGTCGATGTAAAGGCCAACACTCCCCGAAACTCAACGGCTTC
CGTGGATCTCGTTCTAGAAGCTTCACAGCAGAATTTGCATGCGCACGATT
CATTTTGCAGTGATAATATAGCAGATCTTTCTAGCCTTTGGAGCTGGACT
ACTCTGTAGAGGAAGAGAACAGAGATAGGACACCACCGTAGAGATTGGAT
CAAAGTTCAGGGCTTTCATCGTCACTATCCAAGCATGGGGATGAATAACC
CAATTGTGATATTTTCCACAAGGCCAGTTGGTCCTCTTATGACCCTCGCT
GGTTGAGCAACCTACCAACCCTTCCTTCATAATCGGGTTCTACATGACCG
AGACAAGGCTCCACTCCTTGTTCGCCTACTGTACCACAGGTTACCCAAGA
GATAACTGCCATACTTCGAGGGGTTCAAGACCTCGGAGCGGAAAAGAGAG
GGGATGATGAGACTGAGGGAGTAAGGAAGAACGAAGGGGGGGTGTTGTCA
GGGCAGCACACCGAGGAAGATCAAGCAGCGGCGTTGACTTCGGCGGAAGC
AAAGCTAGACGAACTATTGGATCGTCTTGCAAAGCTGAGGTCGCTGGTGA
GTCCTTTTGAGAAGGATTTAAAGAGAATATATTAATAAGCTAGTTTTGCG
TCTTTTTGAATTAAAGTAGAAGGGATTGACAAATACCGTCTGGTTCATGA
GTCTGGTTGGGGCTAAGCATTTTGGTTTTGTATATTATTGCTTGTAATTG
TGTGAGGAACAGAAACTGATTGAGGGAGGAAAGGCAACGGACATCCATGT
CTGACTGGAGGCGCAGCGCACATGCAGCACAGGCCAATGATCATACCACA
GTAAGGTGCACCAATATCGTCAGGGGTACCAGGATCAAGTCCCTCCCACA
CACACTC
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Coding sequence (CDS) from alignment at C-tenellus_contig11537:3665..4771+

>mRNA_C-tenellus_contig11537.1.1 ID=mRNA_C-tenellus_contig11537.1.1|Name=mRNA_C-tenellus_contig11537.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig11537:3665..4771+ (Choristocarpus tenellus KU2346)
ATGGCAGCAGGCATGGAAATAGATGGACCCTTCGTCAAGGTCCCTTGCGA
GTGCCTCAATCAGGTCTTCCGCAAGACACGAAAGACGGTTACCCAAGAGA
TAACTGCCATACTTCGAGGGGTTCAAGACCTCGGAGCGGAAAAGAGAGGG
GATGATGAGACTGAGGGAGTAAGGAAGAACGAAGGGGGGGTGTTGTCAGG
GCAGCACACCGAGGAAGATCAAGCAGCGGCGTTGACTTCGGCGGAAGCAA
AGCTAGACGAACTATTGGATCGTCTTGCAAAGCTGAGGTCGCTGGTGAGT
CCTTTTGAGAAGGATTTAAAGAGAATATATTAA
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