mRNA_C-tenellus_contig11534.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11534.2.1
Unique NamemRNA_C-tenellus_contig11534.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A6H5JFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.720e-36
Identity = 103/343 (30.03%), Postives = 164/343 (47.81%), Query Frame = 1
Query:    1 LMQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADF--------GVNVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQTCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDV---PGKPGLLVYGNNSPGASIS-FDMTCRTGSSV-SVGYLGSYVGMGVVEVLVNGTSPNHD--------GSQYLIDGLWDEHISVESYTFIPLHGGGVSGSTVNS--VTRADGKHIDRPEYELAKKAGAINTRKVRGSAKFKLLSLACC 960
            +++ ++ N     + HE+   YV + ++  PAL+Y E F A F          N+AE+H+S+T+++++PMVS+R AV+P++ D   A  +WG+       + HP W+ HQL ADV+ +YLQ+ Y  F   +G + +  P     +ER  Q    G    MG    +P   +       D    E+     G  V    G+ GL  +   +   +++ F++ C  G+ +  + YL SYVGMG V V +       D         S  ++DGLWD H SV S+  IP+   G  G+   S  +  A+ +           K      ++VRG  KFKL+SL CC
Sbjct:   31 VIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLEAPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAAAEDIWGH-------SVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSPNPSP-----SERELQRFKGG----MGCLA-NPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGATDPAVATFELVCDGGAGLLDMEYLVSYVGMGSVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGGGNVRVSFRILSAEEERSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 356          
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.540e-35
Identity = 103/340 (30.29%), Postives = 161/340 (47.35%), Query Frame = 1
Query:    1 LMQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADFGV--------NVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQTCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASIS-FDMTCRTGSSV-SVGYLGSYVGMG--VVEVLVNGTSP------NHDGSQYLIDGLWDEHISVESYTFIPLH--GGGVSGSTVNSVTRADGKHIDRPEYELAKKAGAINTRKVRGSAKFKLLSLACC 960
            +++ ++ N     + HE+   Y+   ++  PAL+Y E F A            N+AE H+S+T ++++PMVS+R AV+P + D   A  +WG+       + HP W+ HQL ADV+ +YLQ+ Y  F   +G +++  P     +ER  Q    G    MG    +P   +   D   D    E+     G  V G  G   +  ++   +++ FD+ C  G  +  + YL SY GMG  +VE+    T+       N   S  ++DGLWD H SV S+  IP+   GGG        +  A+G+           K      ++VRG  KFKL+SL CC
Sbjct:  209 VIELFEYNLEHLKMAHELLIRYIRYTMFHSPALLYAESFIAPSRTLQVPWQSENMAEAHASVTRKHDIPMVSFRDAVWPQKEDYAAAEVIWGH-------SVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSSNPSP-----SERELQRFKSG----MGCLA-NPRSAILQLDKYLDAPPPEELVSVSGSSVSGDAGPTGFRKDATDPAVATFDLVCDGGVGLLDMEYLVSYEGMGSAMVEIEAGPTAEDVQDEGNSSTSTVIVDGLWDSHASVPSFETIPIPDAGGGRHVRVSIRIMSAEGERSSSSSRLFDFKGDLDREKEVRGDRKFKLISLQCC 531          
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 6.410e-35
Identity = 97/340 (28.53%), Postives = 158/340 (46.47%), Query Frame = 1
Query:    1 LMQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADF--------GVNVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQTCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASIS-FDMTCRTGSSV-SVGYLGSYVGMGVVEVLVNGTSPNHD--------GSQYLIDGLWDEHISVESYTFIPLHGGGVSGSTVNS--VTRADGKHIDRPEYELAKKAGAINTRKVRGSAKFKLLSLACC 960
            +++ ++ N     + HE+   YV + ++  PAL+Y E F A F          N+AE+H+S+T+++++PMVS+R AV+P + D   A  +WG+       + HP W+ HQL ADV+ +YLQ+ Y  F   +G   +  P         E    +G +  +     S  +     D            W + + + G+ GL  +   +   +++ F++ C  G  +  + YL SY GMG V V +       D         S  ++DGLWD H SV S+  IP+   G  G+   S  +  A+ +H          K      ++VRG  KFKL+SL CC
Sbjct:  181 VIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPKKEDYAAAEDIWGH-------SVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSP------SEKELQRFKGGMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLK-LSGEAGLTGFRKYATDPAVATFELVCDGGVGLLDIEYLVSYAGMGAVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGGGNVRVSLRILSAEEEHSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 506          
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A836C7J5_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7J5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.950e-15
Identity = 65/224 (29.02%), Postives = 101/224 (45.09%), Query Frame = 1
Query:   76 KIYSRPALIYVEGFEAD--------FGVNVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIR--LWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQ------TCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASISFDMTCRTGSSVSVGYLGSYVGMGVVEVL 699
            K+ S PA+IY+E F  D        +  +V +    I E Y   MVSYR AV+P   + + A++   W N       + HP W  HQL+ADVL H+L  +YV  C        R P  D     A +      T    HL   G T  + F  V  ++     S     +W +  +   +PG + +G   P A +  ++ CR  + +++ +L SY  +G V+V+
Sbjct:  220 KLESAPAVIYMEAFIPDPRYDRFKDYFWSVQDWVRPIVEPYGAHMVSYRDAVWPVYEERSPALQEVFWENLPDSPDDSIHPSWRAHQLYADVLAHFLDTQYVEACK--AQEEGRPPGSDAHFRSASEAPLLPETARMEHLLCDGNTPSTLFD-VHKAESLSSVSMIRNASWAIYAESKKRPGFIGFGLIDPHAVLEVELKCRKHAQLAITFLESYEQVGAVQVM 440          
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A7S1LZ06_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LZ06_ALECA)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-5
Identity = 48/174 (27.59%), Postives = 73/174 (41.95%), Query Frame = 1
Query:  172 YEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVT-ERAEQ--TCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASISFDMTCRTGSSVSVGYLGSYVGMG 684
            Y +PMV Y   V  + + P D   LW  G        HPGW+THQ+ ADV+I      + + C+         P     + ER ++  TC+ G   Y       P   +              + W+L ED PGKPG +   +  PGA ++F ++      +   YL +Y  +G
Sbjct:    5 YGLPMVDYASLV-ESAARPDD---LWCCG-------MHPGWQTHQILADVVIGTFASGFRDLCTAASVPKPTFPARTLASQERLDRVKTCMAGESEYYAPKRDGPQPTIV-------------HGWRLFEDSPGKPGWI---SEQPGAVLTFRLSFGFMPKLLFTYLQTYENIG 151          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JFN1_9PHAE3.720e-3630.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT5_9PHAE4.540e-3530.29SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D8LJK3_ECTSI6.410e-3528.53SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A836C7J5_9STRA4.950e-1529.02SGNH_hydro domain-containing protein n=1 Tax=Tribo... [more]
A0A7S1LZ06_ALECA1.110e-527.59Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11534contigC-tenellus_contig11534:2641..3675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog160860.XP_007351351.1
Model size963
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.5e-06
EggNOG OGs2B6NA@1|root,2S0MI@2759|Eukaryota,3A3G4@33154|Opisthokonta,3P3NI@4751|Fungi,3V19S@5204|Basidiomycota,22BUU@155619|Agaricomycetes,3H7YR@355688|Agaricomycetes incertae sedis
DescriptionExpressed protein
Cds size960
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.7744026-CDS-C-tenellus_contig11534:2640..27391680789182.7744026-CDS-C-tenellus_contig11534:2640..2739Choristocarpus tenellus KU2346CDSC-tenellus_contig11534 2641..2739 -
1680789182.78841-CDS-C-tenellus_contig11534:2811..36721680789182.78841-CDS-C-tenellus_contig11534:2811..3672Choristocarpus tenellus KU2346CDSC-tenellus_contig11534 2812..3672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.7991076-UTR-C-tenellus_contig11534:3672..36751680789182.7991076-UTR-C-tenellus_contig11534:3672..3675Choristocarpus tenellus KU2346UTRC-tenellus_contig11534 3673..3675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11534.2.1prot_C-tenellus_contig11534.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11534 2641..3672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11534.2.1

>prot_C-tenellus_contig11534.2.1 ID=prot_C-tenellus_contig11534.2.1|Name=mRNA_C-tenellus_contig11534.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=320bp
MQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADFGVNVAELH
SSITERYEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETH
QLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQTCLQGHLTY
MGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPG
ASISFDMTCRTGSSVSVGYLGSYVGMGVVEVLVNGTSPNHDGSQYLIDGL
WDEHISVESYTFIPLHGGGVSGSTVNSVTRADGKHIDRPEYELAKKAGAI
NTRKVRGSAKFKLLSLACC*
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mRNA from alignment at C-tenellus_contig11534:2641..3675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11534.2.1 ID=mRNA_C-tenellus_contig11534.2.1|Name=mRNA_C-tenellus_contig11534.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1035bp|location=Sequence derived from alignment at C-tenellus_contig11534:2641..3675- (Choristocarpus tenellus KU2346)
TTGATGCAGTACTACAAACAGAACACGACCAAGTTCCTCATTGACCACGA GGTCTTCACTGATTACGTGCTGAACAAAATATACAGTCGGCCAGCACTTA TCTATGTAGAGGGCTTCGAGGCTGACTTTGGAGTGAATGTCGCAGAGCTG CATAGCTCCATCACAGAGCGCTACGAGGTACCTATGGTATCCTACCGTCA TGCTGTCTATCCCAACAGGAGTGATCCCACAGATGCAATACGACTCTGGG GCAATGGTGGGGGACCTAGCAAGGGCACTCCACACCCTGGTTGGGAAACA CACCAGCTTTTTGCAGATGTCCTCATCCATTACCTCCAGGTTGAGTATGT AAATTTCTGCTCCAAGTTTGGGGGGGCAACCCATAGGGTCCCATTCCTAG ATGGTGTGACAGAGCGGGCTGAACAGACTTGCCTCCAGGGTCACCTCACA TACATGGGCGTCACAGGAGGTTCCCCTTTCAAGCCTGTCTTTGGATCGGA TGGTACTGGTGACAACAGCAACCAGGAGAAGAATGCTTGGAAGCTGGGCG AGGATGTCCCAGGGAAGCCTGGCTTGCTGGTGTATGGAAACAATTCACCT GGAGCTTCGATCTCGTTTGATATGACATGCCGGACCGGTTCTTCTGTCTC TGTCGGCTACCTTGGCAGCTATGTGGGCATGGGGGTGGTGGAGGTCCTTG TGAACGGCACTAGTCCTAATCACGATGGTTCGCAGTACTTGATAGATGGA CTTTGGGACGAGCATATCTCGGTTGAGAGTTACACCTTCATTCCTCTGCA TGGAGGGGGAGTTTCTGGTTCAACTGTGAACTCAGTAACCAGGGCTGATG GGAAACATATTGATGTGATCAATGCTGAAGGAGGGGGAGGGCATGGTGAA GAAATTTCTTCACGGTTAACCTTTAGGGTGTTAAAGAGGCCTGAGTATGA ACTGGCTAAAAAGGCTGGGGCAATAAATACGCGTAAAGTTCGAGGTTCTG CCAAGTTCAAGTTGTTATCCCTGGCCTGCTGCTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11534:2641..3675-

>mRNA_C-tenellus_contig11534.2.1 ID=mRNA_C-tenellus_contig11534.2.1|Name=mRNA_C-tenellus_contig11534.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=960bp|location=Sequence derived from alignment at C-tenellus_contig11534:2641..3675- (Choristocarpus tenellus KU2346)
ATGCAGTACTACAAACAGAACACGACCAAGTTCCTCATTGACCACGAGGT
CTTCACTGATTACGTGCTGAACAAAATATACAGTCGGCCAGCACTTATCT
ATGTAGAGGGCTTCGAGGCTGACTTTGGAGTGAATGTCGCAGAGCTGCAT
AGCTCCATCACAGAGCGCTACGAGGTACCTATGGTATCCTACCGTCATGC
TGTCTATCCCAACAGGAGTGATCCCACAGATGCAATACGACTCTGGGGCA
ATGGTGGGGGACCTAGCAAGGGCACTCCACACCCTGGTTGGGAAACACAC
CAGCTTTTTGCAGATGTCCTCATCCATTACCTCCAGGTTGAGTATGTAAA
TTTCTGCTCCAAGTTTGGGGGGGCAACCCATAGGGTCCCATTCCTAGATG
GTGTGACAGAGCGGGCTGAACAGACTTGCCTCCAGGGTCACCTCACATAC
ATGGGCGTCACAGGAGGTTCCCCTTTCAAGCCTGTCTTTGGATCGGATGG
TACTGGTGACAACAGCAACCAGGAGAAGAATGCTTGGAAGCTGGGCGAGG
ATGTCCCAGGGAAGCCTGGCTTGCTGGTGTATGGAAACAATTCACCTGGA
GCTTCGATCTCGTTTGATATGACATGCCGGACCGGTTCTTCTGTCTCTGT
CGGCTACCTTGGCAGCTATGTGGGCATGGGGGTGGTGGAGGTCCTTGTGA
ACGGCACTAGTCCTAATCACGATGGTTCGCAGTACTTGATAGATGGACTT
TGGGACGAGCATATCTCGGTTGAGAGTTACACCTTCATTCCTCTGCATGG
AGGGGGAGTTTCTGGTTCAACTGTGAACTCAGTAACCAGGGCTGATGGGA
AACATATTGATAGGCCTGAGTATGAACTGGCTAAAAAGGCTGGGGCAATA
AATACGCGTAAAGTTCGAGGTTCTGCCAAGTTCAAGTTGTTATCCCTGGC
CTGCTGCTAG
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