mRNA_C-tenellus_contig11534.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A6H5JFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE) HSP 1 Score: 142 bits (359), Expect = 3.720e-36 Identity = 103/343 (30.03%), Postives = 164/343 (47.81%), Query Frame = 1 Query: 1 LMQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADF--------GVNVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQTCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDV---PGKPGLLVYGNNSPGASIS-FDMTCRTGSSV-SVGYLGSYVGMGVVEVLVNGTSPNHD--------GSQYLIDGLWDEHISVESYTFIPLHGGGVSGSTVNS--VTRADGKHIDRPEYELAKKAGAINTRKVRGSAKFKLLSLACC 960 +++ ++ N + HE+ YV + ++ PAL+Y E F A F N+AE+H+S+T+++++PMVS+R AV+P++ D A +WG+ + HP W+ HQL ADV+ +YLQ+ Y F +G + + P +ER Q G MG +P + D E+ G V G+ GL + + +++ F++ C G+ + + YL SYVGMG V V + D S ++DGLWD H SV S+ IP+ G G+ S + A+ + K ++VRG KFKL+SL CC Sbjct: 31 VIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLEAPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAAAEDIWGH-------SVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSPNPSP-----SERELQRFKGG----MGCLA-NPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGATDPAVATFELVCDGGAGLLDMEYLVSYVGMGSVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGGGNVRVSFRILSAEEERSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 356
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE) HSP 1 Score: 143 bits (360), Expect = 4.540e-35 Identity = 103/340 (30.29%), Postives = 161/340 (47.35%), Query Frame = 1 Query: 1 LMQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADFGV--------NVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQTCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASIS-FDMTCRTGSSV-SVGYLGSYVGMG--VVEVLVNGTSP------NHDGSQYLIDGLWDEHISVESYTFIPLH--GGGVSGSTVNSVTRADGKHIDRPEYELAKKAGAINTRKVRGSAKFKLLSLACC 960 +++ ++ N + HE+ Y+ ++ PAL+Y E F A N+AE H+S+T ++++PMVS+R AV+P + D A +WG+ + HP W+ HQL ADV+ +YLQ+ Y F +G +++ P +ER Q G MG +P + D D E+ G V G G + ++ +++ FD+ C G + + YL SY GMG +VE+ T+ N S ++DGLWD H SV S+ IP+ GGG + A+G+ K ++VRG KFKL+SL CC Sbjct: 209 VIELFEYNLEHLKMAHELLIRYIRYTMFHSPALLYAESFIAPSRTLQVPWQSENMAEAHASVTRKHDIPMVSFRDAVWPQKEDYAAAEVIWGH-------SVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSSNPSP-----SERELQRFKSG----MGCLA-NPRSAILQLDKYLDAPPPEELVSVSGSSVSGDAGPTGFRKDATDPAVATFDLVCDGGVGLLDMEYLVSYEGMGSAMVEIEAGPTAEDVQDEGNSSTSTVIVDGLWDSHASVPSFETIPIPDAGGGRHVRVSIRIMSAEGERSSSSSRLFDFKGDLDREKEVRGDRKFKLISLQCC 531
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI) HSP 1 Score: 142 bits (358), Expect = 6.410e-35 Identity = 97/340 (28.53%), Postives = 158/340 (46.47%), Query Frame = 1 Query: 1 LMQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADF--------GVNVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQTCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASIS-FDMTCRTGSSV-SVGYLGSYVGMGVVEVLVNGTSPNHD--------GSQYLIDGLWDEHISVESYTFIPLHGGGVSGSTVNS--VTRADGKHIDRPEYELAKKAGAINTRKVRGSAKFKLLSLACC 960 +++ ++ N + HE+ YV + ++ PAL+Y E F A F N+AE+H+S+T+++++PMVS+R AV+P + D A +WG+ + HP W+ HQL ADV+ +YLQ+ Y F +G + P E +G + + S + D W + + + G+ GL + + +++ F++ C G + + YL SY GMG V V + D S ++DGLWD H SV S+ IP+ G G+ S + A+ +H K ++VRG KFKL+SL CC Sbjct: 181 VIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPKKEDYAAAEDIWGH-------SVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSP------SEKELQRFKGGMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLK-LSGEAGLTGFRKYATDPAVATFELVCDGGVGLLDIEYLVSYAGMGAVMVEIEAGPTAEDLQDEGISSTSTVIVDGLWDSHASVSSFETIPIPDAGGGGNVRVSLRILSAEEEHSSSSSRLFDFKGDEDREKEVRGDRKFKLISLQCC 506
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A836C7J5_9STRA (SGNH_hydro domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7J5_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 4.950e-15 Identity = 65/224 (29.02%), Postives = 101/224 (45.09%), Query Frame = 1 Query: 76 KIYSRPALIYVEGFEAD--------FGVNVAELHSSITERYEVPMVSYRHAVYPNRSDPTDAIR--LWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVTERAEQ------TCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASISFDMTCRTGSSVSVGYLGSYVGMGVVEVL 699 K+ S PA+IY+E F D + +V + I E Y MVSYR AV+P + + A++ W N + HP W HQL+ADVL H+L +YV C R P D A + T HL G T + F V ++ S +W + + +PG + +G P A + ++ CR + +++ +L SY +G V+V+ Sbjct: 220 KLESAPAVIYMEAFIPDPRYDRFKDYFWSVQDWVRPIVEPYGAHMVSYRDAVWPVYEERSPALQEVFWENLPDSPDDSIHPSWRAHQLYADVLAHFLDTQYVEACK--AQEEGRPPGSDAHFRSASEAPLLPETARMEHLLCDGNTPSTLFD-VHKAESLSSVSMIRNASWAIYAESKKRPGFIGFGLIDPHAVLEVELKCRKHAQLAITFLESYEQVGAVQVM 440
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Match: A0A7S1LZ06_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LZ06_ALECA) HSP 1 Score: 55.1 bits (131), Expect = 1.110e-5 Identity = 48/174 (27.59%), Postives = 73/174 (41.95%), Query Frame = 1 Query: 172 YEVPMVSYRHAVYPNRSDPTDAIRLWGNGGGPSKGTPHPGWETHQLFADVLIHYLQVEYVNFCSKFGGATHRVPFLDGVT-ERAEQ--TCLQGHLTYMGVTGGSPFKPVFGSDGTGDNSNQEKNAWKLGEDVPGKPGLLVYGNNSPGASISFDMTCRTGSSVSVGYLGSYVGMG 684 Y +PMV Y V + + P D LW G HPGW+THQ+ ADV+I + + C+ P + ER ++ TC+ G Y P + + W+L ED PGKPG + + PGA ++F ++ + YL +Y +G Sbjct: 5 YGLPMVDYASLV-ESAARPDD---LWCCG-------MHPGWQTHQILADVVIGTFASGFRDLCTAASVPKPTFPARTLASQERLDRVKTCMAGESEYYAPKRDGPQPTIV-------------HGWRLFEDSPGKPGWI---SEQPGAVLTFRLSFGFMPKLLFTYLQTYENIG 151 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11534.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11534.2.1 >prot_C-tenellus_contig11534.2.1 ID=prot_C-tenellus_contig11534.2.1|Name=mRNA_C-tenellus_contig11534.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=320bp MQYYKQNTTKFLIDHEVFTDYVLNKIYSRPALIYVEGFEADFGVNVAELHback to top mRNA from alignment at C-tenellus_contig11534:2641..3675- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11534.2.1 ID=mRNA_C-tenellus_contig11534.2.1|Name=mRNA_C-tenellus_contig11534.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1035bp|location=Sequence derived from alignment at C-tenellus_contig11534:2641..3675- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11534:2641..3675- >mRNA_C-tenellus_contig11534.2.1 ID=mRNA_C-tenellus_contig11534.2.1|Name=mRNA_C-tenellus_contig11534.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=960bp|location=Sequence derived from alignment at C-tenellus_contig11534:2641..3675- (Choristocarpus tenellus KU2346)back to top |