mRNA_C-tenellus_contig1153.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1153.4.1
Unique NamemRNA_C-tenellus_contig1153.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: D8LFH4_ECTSI (Short-chain dehydrogenase/reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFH4_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.870e-33
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPKIMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKL---GIDVPSTSVPDWLLPFDFLRNGKPP 267
            ETP F GRAVAAL ADP+I+ KTGKVQ+VAELAK+YGF+D  G  PPSIRSLRF+LP Y+FPK+   G  + ++SVPDWLLP   + NGKPP
Sbjct:  320 ETPFFTGRAVAALAADPEILKKTGKVQIVAELAKQYGFTDVGGDTPPSIRSLRFLLPTYLFPKILPEGTKIDTSSVPDWLLPMFIMANGKPP 411          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A7S3USF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USF7_HETAK)

HSP 1 Score: 102 bits (253), Expect = 6.980e-24
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPKIMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKLGIDVPS----TSVPDWLLPFDFLRNGKPPE 270
            ETP F GRAVAAL  DP+I +K+GKVQVVAELA EYGF+D NGL PPSIRS RF+ P +V  KL  +V +      VPD  LPF +L  G PPE
Sbjct:  269 ETPEFTGRAVAALALDPRIKAKSGKVQVVAELASEYGFTDKNGLQPPSIRSARFLYPGFVKKKLPREVANLIDDARVPDLRLPF-WLMAGPPPE 361          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A6U5IRZ3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5IRZ3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.330e-23
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPKIMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPK-LGIDVPSTSVPDWLLPFDFLRNGKPPE 270
            E+P F GRAV A+  DP  M K+G  QVVAELA EYGF+D +G  PPSIRSL+F+LP+Y F +     +P   +PDW LPF  +  G+PP+
Sbjct:  237 ESPRFTGRAVVAVATDPNNMEKSGTFQVVAELADEYGFTDVDGKKPPSIRSLKFLLPSYAFDEETRKKIPDWMIPDWKLPFSVMAQGRPPD 327          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A7S2GC83_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC83_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.320e-23
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPKIMS-KTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKLGID---VPS---TSVPDWLLPFDFLRNGKPP 267
            ETP F G AV  L   P IM  ++G VQVVAELAKE GF+D NG  PPSIRSLRF+LP YVFP +  +   VPS    +VPD+LLP+     G PP
Sbjct:   19 ETPRFSGAAVTRLATSPTIMEPRSGSVQVVAELAKELGFTDENGNSPPSIRSLRFLLPNYVFPSIEKESGPVPSWIKDNVPDYLLPWSVFSGGPPP 114          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A1Z5JS15_FISSO (Dehydrogenase/reductase SDR family member 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS15_FISSO)

HSP 1 Score: 95.1 bits (235), Expect = 4.050e-21
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPKIMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPK-LGIDVPSTSVPDWLLPFDFLRNGKPPE 270
            E+P   G+A+ A+ ADP  M K+G  QVVAELA+EYGF++ +G  PPSIRSLRF+LP+Y   + +   +PS  +PD+ LPF  +  G+PP+
Sbjct:  314 ESPALTGKAIVAVAADPNNMKKSGSYQVVAELAQEYGFTEDDGRTPPSIRSLRFLLPSYAMDETIRKKIPSWLIPDFKLPFWIMSQGQPPK 404          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A0M0K530_9EUKA (Short-chain dehydrogenase reductase sdr n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K530_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 4.380e-20
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 ETPVFVGRAVAALC---ADPKIMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKL----GIDVPS---TSVPDWLLPFDFLRNGKPPE 270
            ETP   G+AV AL    AD  +   +GKV VVAELAKE GF++ +G +PPSIRSL+++ P +VFP +    G  VP    ++VPDWLLP+     G PPE
Sbjct:   98 ETPALSGKAVCALAGLGADVLLTKYSGKVAVVAELAKELGFAEDDGSVPPSIRSLKYLAPNFVFPAIERESGKPVPDWMKSAVPDWLLPWSVFSGGPPPE 197          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A7S2Q2P0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2P0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.830e-20
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPKIMS-KTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKL----GIDVPS---TSVPDWLLPFDFLRNGKPP 267
            ETP F GRA+A L A+  +M  ++GKV VVAELAKE GF+D +G +PPSIRSL+F+LP +VFP++    G  +PS    +VPD+LLP+     G PP
Sbjct:  313 ETPRFSGRAMALLTANSDMMKERSGKVVVVAELAKELGFTDVDGRLPPSIRSLKFILPNFVFPQIEKESGSSLPSWVTDNVPDYLLPWSTFSGGPPP 409          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A7S3QJA7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJA7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.070e-19
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPK--IMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKL----GIDVPS---TSVPDWLLPFDFLRNGKPPE 270
            ETP F GRAV  L + PK  +M+++G V+VVAEL KE GF+D NG +P SIRSL+++LP +VFP++    G  VP+    +VPD LLP+     G PPE
Sbjct:  274 ETPAFSGRAVVKLASLPKKDMMARSGNVEVVAELGKEMGFTDVNGNLPASIRSLQYLLPNFVFPQVEKESGKPVPNWIKDNVPDILLPWSVFSGGPPPE 372          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A7S0LBI5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBI5_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 5.740e-18
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 ETPVFVGRAVAALC--ADPKIMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKL---GIDVPS---TSVPDWLLPFDFLRNGKPP 267
            ET  F GRAV AL   +  +++ ++G+VQVVAELAKE+ F + +G  PPSIRSL F+LP Y FP++   G+ +P+   +SVPD LLP+    +G PP
Sbjct:  271 ETAAFSGRAVTALAGLSRAELLERSGRVQVVAELAKEFDFLEADGSRPPSIRSLAFLLPNYAFPQMEAGGLRIPAWVRSSVPDVLLPWSIFSSGSPP 367          
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Match: A0A7S4EH97_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EH97_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.940e-18
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 ETPVFVGRAVAALCADPK--IMSKTGKVQVVAELAKEYGFSDTNGLIPPSIRSLRFMLPAYVFPKL------GIDVPS---TSVPDWLLPFDFLRNGKPPE 270
            E+P F G+AV  L A PK  +M ++G V+VVAELAKE+ F+D +G  PPSIRSL+++LP +VFP +      G ++P     ++PD LLP+    +G PPE
Sbjct:  303 ESPSFSGKAVVELAALPKTTMMERSGNVEVVAELAKEFDFNDLDGNRPPSIRSLKYLLPNFVFPSIEKELEDGKEIPDWIKNNIPDILLPWSTFSSGPPPE 403          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1153.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH4_ECTSI1.870e-3366.30Short-chain dehydrogenase/reductase n=2 Tax=Ectoca... [more]
A0A7S3USF7_HETAK6.980e-2460.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U5IRZ3_9STRA1.330e-2352.75Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2GC83_9STRA6.320e-2356.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JS15_FISSO4.050e-2149.45Dehydrogenase/reductase SDR family member 1 n=2 Ta... [more]
A0A0M0K530_9EUKA4.380e-2049.00Short-chain dehydrogenase reductase sdr n=1 Tax=Ch... [more]
A0A7S2Q2P0_9STRA7.830e-2052.58Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3QJA7_9STRA3.070e-1950.51Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0LBI5_9EUKA5.740e-1848.45Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4EH97_9STRA6.940e-1846.53Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1153contigC-tenellus_contig1153:12335..12920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LFH4
Preferred nameDHRS1
PFAMsadh_short,adh_short_C2
Model size273
Max annot lvl2759|Eukaryota
KEGG rclassRC00029,RC00117
KEGG koko:K00059,ko:K08141,ko:K11163,ko:K13237
KEGG TC2.A.1.1
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,ko04146,map00061,map00333,map00780,map01040,map01100,map01130,map01212,map04146
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0012505,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704
Exons2
Evalue3.07e-34
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
EC1.1.1.100,1.3.1.34
Descriptionoxidation-reduction process
Cds size273
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.5826867-CDS-C-tenellus_contig1153:12334..125321680789182.5826867-CDS-C-tenellus_contig1153:12334..12532Choristocarpus tenellus KU2346CDSC-tenellus_contig1153 12335..12532 -
1680789182.602018-CDS-C-tenellus_contig1153:12845..129201680789182.602018-CDS-C-tenellus_contig1153:12845..12920Choristocarpus tenellus KU2346CDSC-tenellus_contig1153 12846..12920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1153.4.1prot_C-tenellus_contig1153.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1153 12335..12920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1153.4.1

>prot_C-tenellus_contig1153.4.1 ID=prot_C-tenellus_contig1153.4.1|Name=mRNA_C-tenellus_contig1153.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=91bp
ETPVFVGRAVAALCADPKIMSKTGKVQVVAELAKEYGFSDTNGLIPPSIR
SLRFMLPAYVFPKLGIDVPSTSVPDWLLPFDFLRNGKPPE*
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mRNA from alignment at C-tenellus_contig1153:12335..12920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1153.4.1 ID=mRNA_C-tenellus_contig1153.4.1|Name=mRNA_C-tenellus_contig1153.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=586bp|location=Sequence derived from alignment at C-tenellus_contig1153:12335..12920- (Choristocarpus tenellus KU2346)
GAGACTCCAGTGTTTGTGGGTCGTGCTGTGGCTGCACTGTGTGCTGATCC AAAAATTATGAGCAAAACTGGCAAGGTGAGGTTGTTTGGGTGATGGCTCC TGCATATCTGCCTGCTATCTATGAAGTTTTTCTTTGTAGCTCTACTATTT CTGCTCACCACATGTTTCAAATGCTTGGAAAAGACAGACCACTGTGACAG TTGTCATTTTTGTCTTCACTATACTGAATACTGTTGTGTGGGCTTGGATA CTCGTTGGTGCCTCACACTGACTGTTCAATCATACTAATTGAGGGTTTTC TAGCTGATTTAATTGCCATTTTCCTGCCCTTAATCCTTGTGCAACTCACT TTTAAATGACCCTTTAACATTTGCTCCTCCTGCACCAGGTGCAGGTGGTA GCAGAGCTTGCGAAAGAGTATGGCTTCTCTGATACAAATGGGCTCATACC CCCCTCAATCCGCAGTCTACGGTTTATGTTGCCTGCATATGTATTTCCCA AGCTCGGAATAGATGTCCCGAGTACCTCTGTGCCTGACTGGCTTTTGCCT TTTGACTTCCTACGAAATGGCAAACCCCCTGAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig1153:12335..12920-

>mRNA_C-tenellus_contig1153.4.1 ID=mRNA_C-tenellus_contig1153.4.1|Name=mRNA_C-tenellus_contig1153.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=273bp|location=Sequence derived from alignment at C-tenellus_contig1153:12335..12920- (Choristocarpus tenellus KU2346)
GAGACTCCAGTGTTTGTGGGTCGTGCTGTGGCTGCACTGTGTGCTGATCC
AAAAATTATGAGCAAAACTGGCAAGGTGCAGGTGGTAGCAGAGCTTGCGA
AAGAGTATGGCTTCTCTGATACAAATGGGCTCATACCCCCCTCAATCCGC
AGTCTACGGTTTATGTTGCCTGCATATGTATTTCCCAAGCTCGGAATAGA
TGTCCCGAGTACCTCTGTGCCTGACTGGCTTTTGCCTTTTGACTTCCTAC
GAAATGGCAAACCCCCTGAGTGA
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