mRNA_C-tenellus_contig11482.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11482.1.1
Unique NamemRNA_C-tenellus_contig11482.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Match: D8LN86_ECTSI (Similar to DNA (Cytosine-5-)-methyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN86_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.950e-14
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 RRCHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR 123
            RRC  C  C++ DC QCR+C+DMPKHGGRGS+KQPC+AR+
Sbjct:  486 RRCGECAPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARK 525
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BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Match: A0A7S2WD19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD19_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-8
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 TRRCHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR 123
            + RC  C GC+A +C  CRFCLDMP  GG G+ KQ C+ R+
Sbjct:   80 SNRCGECAGCRAQNCGDCRFCLDMPIFGGPGNLKQGCERRQ 120
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BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Match: A0A553P9S0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9S0_TIGCA)

HSP 1 Score: 50.1 bits (118), Expect = 7.130e-6
Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = 1 
Query:   10 CHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR 123
            C +C+ C + DC  C +C DMP+ GG G  + PCQ R+
Sbjct:  506 CKICQACISPDCGMCSYCSDMPRFGGPGRMRHPCQMRQ 543
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11482.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN86_ECTSI6.950e-1467.50Similar to DNA (Cytosine-5-)-methyltransferase (Pa... [more]
A0A7S2WD19_9STRA1.700e-853.66Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A553P9S0_TIGCA7.130e-644.74Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11482contigC-tenellus_contig11482:1421..1546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LN86
PFAMszf-CXXC
Model size126
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.14e-14
EggNOG OGs2D052@1|root,2SCUE@2759|Eukaryota
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.199765-CDS-C-tenellus_contig11482:1420..15461680789180.199765-CDS-C-tenellus_contig11482:1420..1546Choristocarpus tenellus KU2346CDSC-tenellus_contig11482 1421..1546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11482.1.1prot_C-tenellus_contig11482.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11482 1421..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11482.1.1

>prot_C-tenellus_contig11482.1.1 ID=prot_C-tenellus_contig11482.1.1|Name=mRNA_C-tenellus_contig11482.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=42bp
TRRCHVCKGCKAVDCQQCRFCLDMPKHGGRGSFKQPCQARR*
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mRNA from alignment at C-tenellus_contig11482:1421..1546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11482.1.1 ID=mRNA_C-tenellus_contig11482.1.1|Name=mRNA_C-tenellus_contig11482.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=126bp|location=Sequence derived from alignment at C-tenellus_contig11482:1421..1546+ (Choristocarpus tenellus KU2346)
ACACGCCGTTGCCATGTTTGCAAAGGATGCAAGGCGGTTGACTGCCAGCA
ATGTCGTTTTTGCTTGGACATGCCCAAACATGGTGGCAGAGGTTCATTCA
AGCAACCCTGTCAAGCGAGGCGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11482:1421..1546+

>mRNA_C-tenellus_contig11482.1.1 ID=mRNA_C-tenellus_contig11482.1.1|Name=mRNA_C-tenellus_contig11482.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=126bp|location=Sequence derived from alignment at C-tenellus_contig11482:1421..1546+ (Choristocarpus tenellus KU2346)
ACACGCCGTTGCCATGTTTGCAAAGGATGCAAGGCGGTTGACTGCCAGCA
ATGTCGTTTTTGCTTGGACATGCCCAAACATGGTGGCAGAGGTTCATTCA
AGCAACCCTGTCAAGCGAGGCGGTGA
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