mRNA_C-tenellus_contig11480.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11480.4.1
Unique NamemRNA_C-tenellus_contig11480.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11480.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11480contigC-tenellus_contig11480:2756..3247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size494
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.0224812-UTR-C-tenellus_contig11480:2755..28601680789180.0224812-UTR-C-tenellus_contig11480:2755..2860Choristocarpus tenellus KU2346UTRC-tenellus_contig11480 2756..2860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789180.0313163-CDS-C-tenellus_contig11480:2860..32471680789180.0313163-CDS-C-tenellus_contig11480:2860..3247Choristocarpus tenellus KU2346CDSC-tenellus_contig11480 2861..3247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11480.4.1prot_C-tenellus_contig11480.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11480 2861..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11480.4.1

>prot_C-tenellus_contig11480.4.1 ID=prot_C-tenellus_contig11480.4.1|Name=mRNA_C-tenellus_contig11480.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=129bp
MVKRLSQLCKGMGIPCTMEDGSTFTVERNFRMDLVFHAGALVDTRSARYR
DKGLLLYINFVEVQAVSHLPHSSTSNGVTAAAAKTRKQTHYEGSFDPRGI
SLNTFAVESFEHLGKQAESFRFELAVHMI
back to top

mRNA from alignment at C-tenellus_contig11480:2756..3247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11480.4.1 ID=mRNA_C-tenellus_contig11480.4.1|Name=mRNA_C-tenellus_contig11480.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=492bp|location=Sequence derived from alignment at C-tenellus_contig11480:2756..3247+ (Choristocarpus tenellus KU2346)
CTATTGAACACGTGACTGGTGACTGGGTGCAGGAGGCAAAATATTGATAC
CTGATATGCATGTACCTTCCCTAGGGCAGGAGGACAGGTTCTCCAACGCA
CACTGATGGTGAAGCGTCTAAGTCAACTTTGCAAAGGAATGGGCATCCCT
TGCACTATGGAGGATGGTAGCACATTTACAGTGGAGAGGAATTTCCGCAT
GGATCTGGTCTTCCATGCTGGGGCACTAGTGGACACCAGATCAGCTCGCT
ACCGGGACAAAGGCCTCCTTCTATATATTAATTTTGTAGAAGTGCAGGCA
GTATCTCACCTCCCACACTCATCCACAAGCAATGGTGTAACTGCTGCTGC
AGCTAAGACGCGAAAGCAAACCCACTACGAGGGCTCTTTTGACCCTCGTG
GTATTAGCCTCAACACCTTCGCAGTGGAGAGTTTTGAGCACCTTGGTAAG
CAAGCAGAAAGTTTTCGGTTTGAACTAGCTGTGCACATGATA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11480:2756..3247+

>mRNA_C-tenellus_contig11480.4.1 ID=mRNA_C-tenellus_contig11480.4.1|Name=mRNA_C-tenellus_contig11480.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=387bp|location=Sequence derived from alignment at C-tenellus_contig11480:2756..3247+ (Choristocarpus tenellus KU2346)
ATGGTGAAGCGTCTAAGTCAACTTTGCAAAGGAATGGGCATCCCTTGCAC
TATGGAGGATGGTAGCACATTTACAGTGGAGAGGAATTTCCGCATGGATC
TGGTCTTCCATGCTGGGGCACTAGTGGACACCAGATCAGCTCGCTACCGG
GACAAAGGCCTCCTTCTATATATTAATTTTGTAGAAGTGCAGGCAGTATC
TCACCTCCCACACTCATCCACAAGCAATGGTGTAACTGCTGCTGCAGCTA
AGACGCGAAAGCAAACCCACTACGAGGGCTCTTTTGACCCTCGTGGTATT
AGCCTCAACACCTTCGCAGTGGAGAGTTTTGAGCACCTTGGTAAGCAAGC
AGAAAGTTTTCGGTTTGAACTAGCTGTGCACATGATA
back to top