mRNA_C-tenellus_contig1148.5.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1148.5.2
Unique NamemRNA_C-tenellus_contig1148.5.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: D7G7V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V7_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 9.670e-110
Identity = 151/241 (62.66%), Postives = 185/241 (76.76%), Query Frame = 3
Query:  384 KRERVLASIPSKTIGSLHHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFSTAVAGSNRAFDIVRSVQELGRRGIVNSQKRLNPRQRRAAKKRK 1106
            KR R   + P       HHPFPTEYGDHFETP+QAY+D+   L++LAK L ++RK LRIWDPYYCAGRTPRLLG+LGFP V H N+DFY VV++ RQP HDVL+TNPPYSGDHK+RCLEYC  SGKPW LL+PNYVATKDYYR A +G   G GGEPFY+VP  +Y FDHPEGTG+ADSPF GVW+VH GS+T+ +F   +        ++RS+ EL + G V +++RLNPRQR+A KK++
Sbjct:   92 KRPRESLAAPH------HHPFPTEYGDHFETPLQAYRDIEVALALLAKLLDKKRKHLRIWDPYYCAGRTPRLLGQLGFPKVEHSNQDFYKVVREKRQPKHDVLITNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPENKYYFDHPEGTGHADSPFTGVWYVHCGSHTEAVFEGTITQKRGGVSVLRSLDELSQTGAVTTERRLNPRQRKALKKKR 326          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A6U0XTY6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XTY6_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.970e-67
Identity = 115/228 (50.44%), Postives = 150/228 (65.79%), Query Frame = 3
Query:  438 HPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYL--VPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFS--TAVAGSNRAFDIVRSVQELGRRGIVNSQKRLNPRQRRAAKKRKA 1109
            HPF TEYGDHFETP+ AY+ +  +L  +AKRLG++ K LRI+DP+YCAG     +  LGFP + H+NEDFY    +GR P  DVLVTNPPYS DHK R L +C  SGKPW LL+PNYVATK YY   T G G G    PF++  +P +RY + HPEGTG+ +SPF  +WFV A +   ++    +   GS     ++ S+ +L +   V   +RLNPRQR+AA KR+A
Sbjct:    9 HPFSTEYGDHFETPLIAYKHLRPVLCWIAKRLGKKPKELRIYDPFYCAGAVVGRMASLGFPRLIHRNEDFYRCESEGRVPAFDVLVTNPPYSLDHKERILNFCVTSGKPWALLMPNYVATKQYYTNLTSG-GSGAPPTPFFVAPLPGSRYQYTHPEGTGHDNSPFESMWFVDAMAGKKEVMGELSPAEGSR----VMLSIADLKQARCVRPGRRLNPRQRKAAAKRRA 231          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A7S1IGA0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IGA0_9EUGL)

HSP 1 Score: 223 bits (569), Expect = 2.440e-65
Identity = 114/237 (48.10%), Postives = 159/237 (67.09%), Query Frame = 3
Query:  390 ERVLASIPSKTIGSLHHPFP-TEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFSTAVAGSNRAF--DIVRSVQELGRRGIVNSQKRLNPRQRRA 1091
            E+V+ S  +K + SL +P+   EYGDHFET  QAY+D+  +L   A+ + R   +L I+DP+YC G   R L  LGF  V H+  DFYA VK+G+ P HD+L+TNPPYSGDHK R LEYC  SGKPW LL+PNY+ATK+YY ++T+ K      EPFY V R RY+F HPEGTG+  SPF G WF++ G +T+ L+  +V    R+    + R+V +L ++ +V +  R+NP++R+A
Sbjct:   76 EQVVCS--TKLVTSLEYPWEDVEYGDHFETCDQAYKDITPLLKEAARLMQRDASSLGIYDPFYCDGAVKRHLAALGFHTVHHEKRDFYADVKNGQVPEHDILITNPPYSGDHKERILEYCCASGKPWALLLPNYIATKNYY-QSTLAKHKQ---EPFYFVSRERYMFYHPEGTGHDTSPFEGFWFLYLGPHTEHLYQWSVQNLPRSSYKALTRTVDDLLQKRLVPAP-RMNPKRRKA 305          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A8J4APU4_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APU4_9CHLO)

HSP 1 Score: 211 bits (537), Expect = 4.020e-60
Identity = 106/271 (39.11%), Postives = 150/271 (55.35%), Query Frame = 3
Query:  351 NPSTKKRNVMGKRERVLASIPSKTIGSLHHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFSTAVA-------------------GSNRAFDIVRSVQELGRRGIVNSQKRLNPRQRRAAKKRK 1106
            N S KKR  + + E       +K  G    PF  +Y DHFE+P+QA QD+  +L +L+ +L + + +L ++DPY+C G   +   +LGF    H+N DFY  V  G  P +D+LVTNPPYS DHK R LE+C  SGKPW LL+PNYVATK Y+ E            PF+L P+ RY ++HPEGTG+A+SPF  +W++  G YT+ ++    A                   G      + R+V  L +   V + +RLNP+QR   K +K
Sbjct:   79 NVSHKKRKTVSEDE-TGGRTKAKCAGKGLWPFRVDYNDHFESPLQAVQDIEPVLQLLSIKLKKSKSSLTVYDPYFCQGGIRQHYEQLGFKNFIHRNRDFYKDVDSGNVPSYDILVTNPPYSSDHKERILEFCLRSGKPWALLLPNYVATKAYFSELLDSVSTPAAQRPFFLTPQARYSYEHPEGTGHAESPFFSIWYIGLGEYTETIYKACKARLEPQSNGSSIQSEAAAGLGGRWRVSVARTVDALKQAKAVPTARRLNPKQRARMKHQK 348          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A835SR82_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SR82_9CHLO)

HSP 1 Score: 204 bits (519), Expect = 1.410e-57
Identity = 107/257 (41.63%), Postives = 141/257 (54.86%), Query Frame = 3
Query:  417 KTIGSLHHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLF-----------STAVAGSNR--------------AFDIVRSVQELGRRGIVNSQKRLNPRQRRAAKKRKAG 1112
            K + S   PF  +Y DHFET   A  D+  +L+ L KRL +    L I+DP++C G   R     GF    H+  DFYA V +G+ P +D++VTNPPYS DHK R L++C  SGKPW LL+PNYVATK YY E     G      PFYL P TRY ++HPEGTG+A+SPF  +W+V  G +T+ ++           S A A ++               A  + RSV  L     V + KRLNP+QR   KK+  G
Sbjct:   88 KRVSSDDWPFEVDYNDHFETSSAAVDDIQPVLTALCKRLKKTPAQLAIYDPFFCKGGIRRHYEARGFTNFIHRKRDFYADVANGQLPAYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYAELIEAAGTPPQQRPFYLTPITRYAYEHPEGTGHAESPFYSIWYVGLGQHTEAVYGACRTRLDLSTSGAAAAASXXXXXXXXXXXXXGWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKKMGG 344          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A4D9CYX8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYX8_9STRA)

HSP 1 Score: 203 bits (517), Expect = 7.470e-57
Identity = 110/271 (40.59%), Postives = 154/271 (56.83%), Query Frame = 3
Query:  315 ITQPGPSSLHPQNPSTKKRNVMGKRERVLASI-PSKTIGSL-HHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFSTAVAGSNRA-------FDIVRSVQELGRRGIVNSQKRLNPRQRRAAKK 1100
            ++ P P SL   +  ++ R        + A I P KT  SL  +PFPT+Y DHFE+P++AY+D+   L  L + L R + +L I+DPYYC G    LL  LGFP V+++  DFYA V  G  P +DVLVTNPPYS +HK + L +C GS KPW LL+PNYVA K YY +A   +      +PFYLVP  +Y + HPEGTG+  SPF  +W  + G          V+    A       + +V +V++L   G   S KR + ++R+  K+
Sbjct:  106 LSSPRPPSLFQPSEPSRNRKFKSTTSTLTARIQPKKTQASLPSYPFPTDYADHFESPLRAYEDLEPFLQWLRRALRRDKTSLHIYDPYYCQGAVVNLLKSLGFPRVTNKMRDFYADVAAGTVPSYDVLVTNPPYSDNHKEKILRFCLGSDKPWCLLLPNYVANKSYYLDAI--RPLPQDRQPFYLVPHAKYEYQHPEGTGHMSSPFFSIWVCNPGPIPRRDIGCVVSRLQAAQQQHSLPWRLVLTVEDLRSTGAAPSWKRPSNKRRKKMKR 374          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A835SNK2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SNK2_CHLIN)

HSP 1 Score: 204 bits (519), Expect = 7.640e-57
Identity = 108/269 (40.15%), Postives = 144/269 (53.53%), Query Frame = 3
Query:  381 GKRERVLASIPSKTIGSLHHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFSTA------------------------VAGSNRAFDIVRSVQELGRRGIVNSQKRLNPRQRRAAKKRKAGS 1115
            GK+E+       K + S   PF  +Y DHFET   A  D+  +L  L KRL +    L ++DP++C G   R     GF    H+  DFYA V+ G+ P +D++VTNPPYS DHK R L++C  SGKPW LL+PNYVATK YY E     G      PFYL P TRY ++HPEGTG+A+SPF  +W+V  G++T+ ++                               + A  + RSV  L     V + KRLNP+QR   KK+ AGS
Sbjct:  145 GKKEQKQG----KRVSSDEWPFEVDYNDHFETSAAAVDDIQPVLLALCKRLKKTPAQLAVYDPFFCQGGIRRHYTARGFTNFIHRKRDFYADVESGQLPEYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYSELVDEAGTPPQQRPFYLTPVTRYAYEHPEGTGHAESPFYSIWYVGLGAHTEAVYGACRTKLDSPGPAAAXXXXXXXXXXXXXXXXSWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKKMAGS 409          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: L1IVN4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IVN4_GUITC)

HSP 1 Score: 204 bits (519), Expect = 8.030e-57
Identity = 111/259 (42.86%), Postives = 158/259 (61.00%), Query Frame = 3
Query:  342 HP-QNPSTKKRNVMGKRERVLASIPSKTIGSLHHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLH-DVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFSTAVA--GSNRAFDIVRSVQELGRRGIVNSQKRLNPRQRRAAKKRK 1106
            HP Q  ++KKR+  G +     + P+ +I +  HPFPTEYGDHFET   A  D+A IL   AK  G++  +L I+DPYYC G       + GF  V + N D Y V K        D++VTNPP+SGDHK++CLE+C    + W++L+P Y ATK+Y++E        G  + FY +P+ RY F+HPEGTG+A SPF  +WFV+ G +T+++FS      G      + R+V++L     V+++KRLNPRQR A KK+K
Sbjct:  157 HPDQGNNSKKRHERGPK----GTEPTSSIHN--HPFPTEYGDHFETSKVAIHDIAPILQQFAKVSGKQASSLAIYDPYYCDGAVIEHFRQEGFHNVHNLNVDCYQVWKSATTSSDFDIVVTNPPFSGDHKQKCLEHCVKREQAWMVLLPAYCATKNYFQELMSNWKERG--KVFYGIPKVRYDFEHPEGTGHAVSPFFSIWFVYLGKHTEEIFSWYKKRYGDEGPLKLARTVEDLAANKAVDNRKRLNPRQRAALKKKK 407          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A2J8ADG8_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ADG8_9CHLO)

HSP 1 Score: 199 bits (505), Expect = 2.840e-55
Identity = 103/248 (41.53%), Postives = 139/248 (56.05%), Query Frame = 3
Query:  432 LHHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFST------AVAGSNRAFD------------------IVRSVQELGRRGIVNSQKRLNPRQRRAAKKR 1103
            L  PF  +Y DHFET  +A QD+  +L  L+KRL +    L ++DP+YCAG        LG     H+N DFY  VK G  P +D+LVTNPPYSGDHK R LE+C  SGKPW LL+PNYVATK Y+ +            PF+L P  RY +DHPEGTG+ +SPF  +W+V  G++T+ ++ +      A   +  A D                  + RSV  L +   V + KRLNP+QR+  K++
Sbjct:  116 LSWPFAADYNDHFETDFRAVQDILPVLQQLSKRLCKPLSELAVYDPFYCAGGVRAHYAALGITKFIHRNRDFYDDVKKGALPSYDILVTNPPYSGDHKERILEFCLRSGKPWCLLMPNYVATKAYFGQLQDAASTPPLQRPFFLTPHARYSYDHPEGTGHTESPFFSIWYVCLGAHTEGVYGSCRSRLDAAPAAGGAADQRQGGAPAGXXXAAWGVALARSVDALRQAKAVPTGKRLNPQQRKRLKQK 363          
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Match: A0A835Y0N0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0N0_9CHLO)

HSP 1 Score: 202 bits (515), Expect = 4.560e-55
Identity = 104/265 (39.25%), Postives = 142/265 (53.58%), Query Frame = 3
Query:  417 KTIGSLHHPFPTEYGDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGELGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSGKPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTGNADSPFVGVWFVHAGSYTDDLFSTAVAGSNR----------------------------------AFDIVRSVQELGRRGIVNSQKRLNPRQRRAAKKRKA 1109
            + + +   PF  +Y DHFETP+QA +D+  +L+ L  RLG+    L ++DP++C G   R    LG+    H+  DFYA V+ G  P +DVLVTNPPYS DHK R LE+C  SGKPW LL+PNYVATK Y+ E            PF+L P TRY ++HPEGTG+A+SPF  +W+V  G +T+ +F    A +                                      D+ R V+ L   G V + +R NPRQRR  K++ A
Sbjct:  258 RKVDTSFWPFEVDYNDHFETPIQAVRDLQPVLTALCGRLGKSPAQLAVYDPFFCQGGIRRHFEALGYTNFIHRKRDFYADVEAGNLPKYDVLVTNPPYSEDHKERILEFCLRSGKPWALLMPNYVATKAYFAELLDATSTPAPQRPFFLTPHTRYEYEHPEGTGHAESPFFSIWYVGLGPHTEPVFQACRARTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWGVDLARGVEHLKAAGAVPTARRPNPRQRRKIKEQMA 522          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1148.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V7_ECTSI9.670e-11062.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U0XTY6_9STRA2.970e-6750.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1IGA0_9EUGL2.440e-6548.10Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A8J4APU4_9CHLO4.020e-6039.11Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A835SR82_9CHLO1.410e-5741.63Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A4D9CYX8_9STRA7.470e-5740.59Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A835SNK2_CHLIN7.640e-5740.15Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
L1IVN4_GUITC8.030e-5742.86Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A2J8ADG8_9CHLO2.840e-5541.53Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A835Y0N0_9CHLO4.560e-5539.25Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1148contigC-tenellus_contig1148:4856..6659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7V7
PFAMsKH_1
Model size1559
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.17e-112
EggNOG OGs2BVHF@1|root,2S29B@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-06_000150.1
Cds size1110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.8572366-UTR-C-tenellus_contig1148:4855..48631680789179.8572366-UTR-C-tenellus_contig1148:4855..4863Choristocarpus tenellus KU2346UTRC-tenellus_contig1148 4856..4863 +
1680789179.8868406-UTR-C-tenellus_contig1148:6218..66591680789179.8868406-UTR-C-tenellus_contig1148:6218..6659Choristocarpus tenellus KU2346UTRC-tenellus_contig1148 6219..6659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.8674743-CDS-C-tenellus_contig1148:4863..54271680789179.8674743-CDS-C-tenellus_contig1148:4863..5427Choristocarpus tenellus KU2346CDSC-tenellus_contig1148 4864..5427 +
1680789179.8772793-CDS-C-tenellus_contig1148:5672..62181680789179.8772793-CDS-C-tenellus_contig1148:5672..6218Choristocarpus tenellus KU2346CDSC-tenellus_contig1148 5673..6218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1148.5.2prot_C-tenellus_contig1148.5.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1148 4864..6218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1148.5.2

>prot_C-tenellus_contig1148.5.2 ID=prot_C-tenellus_contig1148.5.2|Name=mRNA_C-tenellus_contig1148.5.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=370bp
MESKSPKGKKRKRAKGKGQDYSDDISSQRGTLDKLKVGGEGDDWGNYKDE
IRTKDKKRRKGKARTASAGKNRSESIDCIIFPKQTSDTGEKLAFDLEKKD
KGITQPGPSSLHPQNPSTKKRNVMGKRERVLASIPSKTIGSLHHPFPTEY
GDHFETPMQAYQDVAGILSILAKRLGRRRKTLRIWDPYYCAGRTPRLLGE
LGFPLVSHQNEDFYAVVKDGRQPLHDVLVTNPPYSGDHKRRCLEYCAGSG
KPWLLLIPNYVATKDYYREATVGKGPGGGGEPFYLVPRTRYVFDHPEGTG
NADSPFVGVWFVHAGSYTDDLFSTAVAGSNRAFDIVRSVQELGRRGIVNS
QKRLNPRQRRAAKKRKAGS*
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mRNA from alignment at C-tenellus_contig1148:4856..6659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1148.5.2 ID=mRNA_C-tenellus_contig1148.5.2|Name=mRNA_C-tenellus_contig1148.5.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1804bp|location=Sequence derived from alignment at C-tenellus_contig1148:4856..6659+ (Choristocarpus tenellus KU2346)
TAGTCAACATGGAGTCCAAGTCCCCTAAAGGTAAGAAGAGGAAGAGGGCG AAGGGAAAAGGGCAAGACTACTCGGATGACATCTCTTCCCAGAGGGGGAC GCTAGACAAGCTCAAAGTAGGGGGTGAGGGCGATGACTGGGGTAACTACA AGGATGAGATCAGGACCAAGGACAAGAAAAGGAGAAAAGGCAAGGCAAGG ACCGCCTCTGCTGGCAAGAATCGTTCTGAAAGCATCGACTGTATCATTTT TCCCAAACAAACTTCTGACACAGGGGAGAAGTTAGCTTTCGATCTCGAGA AAAAGGACAAGGGAATTACTCAGCCTGGACCATCCTCCTTGCATCCTCAA AATCCCTCAACCAAGAAACGCAATGTGATGGGCAAACGAGAGAGGGTCCT TGCTTCAATCCCTTCCAAGACCATTGGAAGTCTTCACCACCCTTTTCCCA CCGAATACGGAGACCACTTCGAGACACCGATGCAAGCGTACCAAGATGTC GCAGGCATCCTGTCGATATTAGCGAAGCGACTGGGCAGGAGACGTAAGAC CCTGCGCATCTGGGACCCATATGTGAGTCTCACAACACGCGAGAGCTGAA TCACTCAACAGAATGTTTATGTTTCTGTCCGCTCTTGTCACAGCTAACAT TACATATAGTTATTCCCATTCCCTCTCCTTTGGCAATTCTGTGTAGGAGT CCCTAGTTCAACCCACCACAATATTACTCCGATGGTCTAGTACTTTTCCC CACCGACCCTTATTCGTCCCGTTTCCAAGTCTCTTGAACTATGTCTGTTT TCCCAACTTTGAGGCAGTACTGCGCAGGCCGGACCCCCCGCCTCCTCGGT GAGCTCGGATTCCCCTTAGTATCTCACCAGAATGAAGACTTCTACGCTGT TGTGAAAGACGGTCGACAGCCCCTGCACGATGTACTGGTAACAAACCCAC CTTACAGCGGTGATCACAAGCGCCGCTGCCTCGAGTATTGTGCAGGTTCA GGAAAACCTTGGCTGCTGCTTATCCCTAACTACGTCGCTACCAAGGACTA CTACCGGGAGGCTACTGTGGGAAAAGGACCTGGGGGAGGGGGTGAACCTT TTTACTTGGTGCCAAGGACGCGCTATGTCTTTGACCACCCAGAAGGAACG GGGAACGCCGACTCACCCTTTGTTGGAGTGTGGTTTGTTCACGCTGGTAG TTACACCGATGATCTCTTCTCTACAGCAGTAGCAGGGTCTAACAGAGCCT TTGATATTGTGAGGTCTGTACAGGAACTTGGGAGGAGAGGCATCGTCAAC TCTCAAAAGAGACTCAACCCCCGGCAACGAAGAGCAGCAAAGAAGCGCAA AGCTGGTAGTTGAGGATACATTGATCAGCAGCTATGTATGACTGTCTGGA GTTGAGGCCTTTGTGTGCAAAAAAAGGGTTTTCCAACCAGTGTACACTTG ATGTGTGTTTACTCGCCCAAACCATACAGTTCAATGTCATCACCTATATG ACTTCCTGCTCTGCTCAATGGCTTCAGCTTTTAGAGCACAATACCTTGGT TAGGTGGACTGGTGCGAGTCAATGAATGAGGATTGATTGGTCAAGAATCG CACTGTCTGTATGACACGTGTGTGGGATAATATTGATAAAACTGTGTGCA TGTAAGTAAACTGTGCCCTTGACACCTAGTTCCTGTTGCACTGGAGGTTG GACAAGCCAACAACACAGGTAAAACAGTTCTGATGAACACCTACATGTTT GGAACAACAGGTTTCAGTGTGAGGTTTGCCACGATGTGTCATCACAAAAC TGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig1148:4856..6659+

>mRNA_C-tenellus_contig1148.5.2 ID=mRNA_C-tenellus_contig1148.5.2|Name=mRNA_C-tenellus_contig1148.5.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1110bp|location=Sequence derived from alignment at C-tenellus_contig1148:4856..6659+ (Choristocarpus tenellus KU2346)
ATGGAGTCCAAGTCCCCTAAAGGTAAGAAGAGGAAGAGGGCGAAGGGAAA
AGGGCAAGACTACTCGGATGACATCTCTTCCCAGAGGGGGACGCTAGACA
AGCTCAAAGTAGGGGGTGAGGGCGATGACTGGGGTAACTACAAGGATGAG
ATCAGGACCAAGGACAAGAAAAGGAGAAAAGGCAAGGCAAGGACCGCCTC
TGCTGGCAAGAATCGTTCTGAAAGCATCGACTGTATCATTTTTCCCAAAC
AAACTTCTGACACAGGGGAGAAGTTAGCTTTCGATCTCGAGAAAAAGGAC
AAGGGAATTACTCAGCCTGGACCATCCTCCTTGCATCCTCAAAATCCCTC
AACCAAGAAACGCAATGTGATGGGCAAACGAGAGAGGGTCCTTGCTTCAA
TCCCTTCCAAGACCATTGGAAGTCTTCACCACCCTTTTCCCACCGAATAC
GGAGACCACTTCGAGACACCGATGCAAGCGTACCAAGATGTCGCAGGCAT
CCTGTCGATATTAGCGAAGCGACTGGGCAGGAGACGTAAGACCCTGCGCA
TCTGGGACCCATATTACTGCGCAGGCCGGACCCCCCGCCTCCTCGGTGAG
CTCGGATTCCCCTTAGTATCTCACCAGAATGAAGACTTCTACGCTGTTGT
GAAAGACGGTCGACAGCCCCTGCACGATGTACTGGTAACAAACCCACCTT
ACAGCGGTGATCACAAGCGCCGCTGCCTCGAGTATTGTGCAGGTTCAGGA
AAACCTTGGCTGCTGCTTATCCCTAACTACGTCGCTACCAAGGACTACTA
CCGGGAGGCTACTGTGGGAAAAGGACCTGGGGGAGGGGGTGAACCTTTTT
ACTTGGTGCCAAGGACGCGCTATGTCTTTGACCACCCAGAAGGAACGGGG
AACGCCGACTCACCCTTTGTTGGAGTGTGGTTTGTTCACGCTGGTAGTTA
CACCGATGATCTCTTCTCTACAGCAGTAGCAGGGTCTAACAGAGCCTTTG
ATATTGTGAGGTCTGTACAGGAACTTGGGAGGAGAGGCATCGTCAACTCT
CAAAAGAGACTCAACCCCCGGCAACGAAGAGCAGCAAAGAAGCGCAAAGC
TGGTAGTTGA
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