mRNA_C-tenellus_contig1148.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: D7G7V6_ECTSI (Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V6_ECTSI) HSP 1 Score: 140 bits (352), Expect = 3.180e-35 Identity = 87/151 (57.62%), Postives = 106/151 (70.20%), Query Frame = 2 Query: 305 MQCAAIATVALRRVAIHTTKKAVVPGAVVARLPVGR-----RAWE---STIVRHFHFSRAVSAAAGQAFLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 MQ A+A AL R A T ++A G+ AR GR +W+ + VRHFHFSR V+ AAG FLDK D ARI+AVVK FEKVD + V+E A FK+DL+LDSLDAVEVVMAIEDEFT+EIPD+EADKI + DAV Y+++HP AK Sbjct: 1 MQRVAVA--ALGRAACLTARRA---GSAAAR---GRSLQLHNSWQQAPAAAVRHFHFSRPVAGAAGDTFLDKGDATARIIAVVKAFEKVDPTKVSENALFKDDLALDSLDAVEVVMAIEDEFTIEIPDSEADKIAGIADAVAYIISHPAAK 143
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A1E7ETX9_9STRA (Acyl carrier protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETX9_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.600e-28 Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 2 Query: 404 VGRRAWESTIVRHFHFSRAVSAAAGQAFLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 V RA ++++ + V A FLD + + RI VVKNF+KVD + +TETA+F EDL LDSLDAVEVVMAIEDEF +EIPDAEADKILSV DAV Y+V+HPMAK Sbjct: 12 VAVRAVNTSLLTGLRQPQIVRTFAASTFLDAGEVSTRIQGVVKNFDKVDQNKITETAKFTEDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYIVSHPMAK 121
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A7S0UFZ0_9STRA (Acyl carrier protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFZ0_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.120e-28 Identity = 67/118 (56.78%), Postives = 81/118 (68.64%), Query Frame = 2 Query: 380 GAVVARLPVGRRAWESTIVRHFHFSRAVSAAAGQAFLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 G V+A R A + RH + + A FLD + A RI V+KNF+KVD + VT+TA+F +DL LDSLDAVEVVMAIEDEF +EIPDAEADKILSV DAV Y+ +HPMAK Sbjct: 5 GRVLASRVAARAAPSMMLARH----QPLRTFAASTFLDSGEVAGRITGVIKNFDKVDGNKVTDTAKFTDDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYISSHPMAK 118
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A448YUF5_9STRA (Acyl carrier protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUF5_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.430e-27 Identity = 63/110 (57.27%), Postives = 82/110 (74.55%), Query Frame = 2 Query: 404 VGRRAWESTIVRHFHFSRAVSAAAGQAFLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 V RA +++ ++AV A FLD A+ + R+ V+KNF+KVD++ VT+T++F +DL LDSLDAVEVVMAIEDEF +EIPDAEADKILSV DAV Y+ +HPMAK Sbjct: 12 VAVRAVNTSLFTGVRQAQAVRTFAASTFLDPAEVSGRVTDVIKNFDKVDANKVTDTSKFTDDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYISSHPMAK 121
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A6T5Y6I5_9STRA (Acyl carrier protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5Y6I5_9STRA) HSP 1 Score: 113 bits (283), Expect = 4.330e-26 Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 2 Query: 485 FLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 FLD AD + RIV+VVKNF+KVD S VT ++F +DL LDSLDAVEVVMAIEDEF VEIPDAEADKI S+ DAV Y+ HPMAK Sbjct: 38 FLDPADVSERIVSVVKNFDKVDESKVTSESKFADDLGLDSLDAVEVVMAIEDEFAVEIPDAEADKIESIGDAVEYISGHPMAK 120
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A059LDR7_9CHLO (Acyl carrier protein n=2 Tax=unclassified Helicosporidium TaxID=2626013 RepID=A0A059LDR7_9CHLO) HSP 1 Score: 112 bits (281), Expect = 1.050e-25 Identity = 57/93 (61.29%), Postives = 78/93 (83.87%), Query Frame = 2 Query: 455 RAVSAAAGQAFLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 +AV A ++LDK+D +R++A+VKNFEKVD + VTE+A F++DL LDSLD VE+VMA+E+EF +EIPDAEADKILSV +AV+YV ++P+AK Sbjct: 37 QAVRGFADSSYLDKSDVTSRVLAIVKNFEKVDPAKVTESAAFQKDLGLDSLDTVELVMALEEEFAIEIPDAEADKILSVSEAVSYVASNPLAK 129
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: B8C103_THAPS (Acyl carrier protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C103_THAPS) HSP 1 Score: 110 bits (275), Expect = 1.820e-25 Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 2 Query: 485 FLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 FL+ A+ RI++VVKNF+KVD + VT T++F +DL LDSLD+VEVVMAIEDEF +EIPDAEAD+I SV DAV YV AHPMAK Sbjct: 2 FLNPAEVQERIISVVKNFDKVDPAKVTSTSKFGDDLGLDSLDSVEVVMAIEDEFAIEIPDAEADRIASVGDAVEYVAAHPMAK 84
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A7S0GLD1_9STRA (Acyl carrier protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLD1_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.040e-25 Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 2 Query: 410 RRAWESTIVRHFHFSRAVSAAAGQAFLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 R+ +S +RHF FL + + A RI+ VVKNF+KVD+S V+ TA+F +DL LDSLDAVEVVMAIEDEF VEIPDAEADKI SV+DAV Y+ HPMAK Sbjct: 45 RQQQQSVPLRHF-----------ATFLPEGEVADRILQVVKNFDKVDASKVSATAKFSDDLGLDSLDAVEVVMAIEDEFAVEIPDAEADKISSVQDAVEYISGHPMAK 141
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A6U6F713_9STRA (Acyl carrier protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6F713_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.250e-25 Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 386 VVARLPVGRRAWESTIVRH----FHFSRAVSAAAGQAFLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 + AR R A ST+ + +S+ V A FL+ + RIV VVKNF+KVD V ++F EDL LDSLD+VEVVMAIEDEF +EIPDAEADKI S+EDAV Y+ HPMAK Sbjct: 4 LAARTAASRLAVRSTVQSNAFASLRYSQPVRTFAATTFLNPEEVTDRIVTVVKNFDKVDPDKVESASKFAEDLGLDSLDSVEVVMAIEDEFAIEIPDAEADKIASIEDAVEYIAGHPMAK 123
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Match: A0A7S1FKS7_9STRA (Acyl carrier protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKS7_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.340e-25 Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = 2 Query: 485 FLDKADTAARIVAVVKNFEKVDSSLVTETARFKEDLSLDSLDAVEVVMAIEDEFTVEIPDAEADKILSVEDAVNYVVAHPMAK 733 FLD ++ ++R+V VVK F+KVD S V T++F +DL LDSLDAVEVVMAIEDEF +EIPDAEAD+ILSVEDAV Y+ AHPMAK Sbjct: 53 FLDPSEVSSRVVEVVKAFDKVDPSKVAATSKFADDLGLDSLDAVEVVMAIEDEFAIEIPDAEADRILSVEDAVAYISAHPMAK 135 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1148.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1148.2.1 >prot_C-tenellus_contig1148.2.1 ID=prot_C-tenellus_contig1148.2.1|Name=mRNA_C-tenellus_contig1148.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=144bp MQCAAIATVALRRVAIHTTKKAVVPGAVVARLPVGRRAWESTIVRHFHFSback to top mRNA from alignment at C-tenellus_contig1148:2170..5429- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1148.2.1 ID=mRNA_C-tenellus_contig1148.2.1|Name=mRNA_C-tenellus_contig1148.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3260bp|location=Sequence derived from alignment at C-tenellus_contig1148:2170..5429- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1148:2170..5429- >mRNA_C-tenellus_contig1148.2.1 ID=mRNA_C-tenellus_contig1148.2.1|Name=mRNA_C-tenellus_contig1148.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=432bp|location=Sequence derived from alignment at C-tenellus_contig1148:2170..5429- (Choristocarpus tenellus KU2346)back to top |