mRNA_C-tenellus_contig11468.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11468.2.1
Unique NamemRNA_C-tenellus_contig11468.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11468.2.1 vs. uniprot
Match: D7FIY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIY0_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.360e-16
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 3 
Query:   30 RRSTPSGDRRGTALFIIPLVVLGL-AVFVVALNIRHYSSMCDVETARDESLNRAAMERRIWALEKELLENSLLVEGIVRELDTLFGASEGLSVTALKILAR 329
            RRS+     R + + + P++ LGL  VFVVALN+RH S +CD    ++ +LNRAAMERRI  LE E+L+NSLL++ ++R LDT FGAS  LSV  L+ LA+
Sbjct:    2 RRSSSPRLLRKSLISLTPVLALGLLVVFVVALNMRHSSILCDSPNGQEGALNRAAMERRIRTLEDEILQNSLLMDKVLRGLDTAFGASAVLSVKELRRLAQ 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11468.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIY0_ECTSI2.360e-1651.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11468contigC-tenellus_contig11468:2838..4854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size995
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007730.1
Cds size480
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11468.2.1prot_C-tenellus_contig11468.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11468 2861..4362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.3663425-UTR-C-tenellus_contig11468:2837..28601680789179.3663425-UTR-C-tenellus_contig11468:2837..2860Choristocarpus tenellus KU2346UTRC-tenellus_contig11468 2838..2860 +
1680789179.4171453-UTR-C-tenellus_contig11468:4362..48541680789179.4171453-UTR-C-tenellus_contig11468:4362..4854Choristocarpus tenellus KU2346UTRC-tenellus_contig11468 4363..4854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.3788052-CDS-C-tenellus_contig11468:2860..29671680789179.3788052-CDS-C-tenellus_contig11468:2860..2967Choristocarpus tenellus KU2346CDSC-tenellus_contig11468 2861..2967 +
1680789179.386978-CDS-C-tenellus_contig11468:3164..32581680789179.386978-CDS-C-tenellus_contig11468:3164..3258Choristocarpus tenellus KU2346CDSC-tenellus_contig11468 3165..3258 +
1680789179.397367-CDS-C-tenellus_contig11468:4044..42991680789179.397367-CDS-C-tenellus_contig11468:4044..4299Choristocarpus tenellus KU2346CDSC-tenellus_contig11468 4045..4299 +
1680789179.4076872-CDS-C-tenellus_contig11468:4338..43621680789179.4076872-CDS-C-tenellus_contig11468:4338..4362Choristocarpus tenellus KU2346CDSC-tenellus_contig11468 4339..4362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11468.2.1

>prot_C-tenellus_contig11468.2.1 ID=prot_C-tenellus_contig11468.2.1|Name=mRNA_C-tenellus_contig11468.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=160bp
MARRSTPSGDRRGTALFIIPLVVLGLAVFVVALNIRHYSSMCDVETARDE
SLNRAAMERRIWALEKELLENSLLVEGIVRELDTLFGASEGLSVTALKIL
ARNVRTSTPSFPTPPYVYQSRVEETLTPTLTLTLTSTLLNDIFFPTFLLY
QVCGSYHVW*
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mRNA from alignment at C-tenellus_contig11468:2838..4854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11468.2.1 ID=mRNA_C-tenellus_contig11468.2.1|Name=mRNA_C-tenellus_contig11468.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2017bp|location=Sequence derived from alignment at C-tenellus_contig11468:2838..4854+ (Choristocarpus tenellus KU2346)
TCTGGGTGGGAAAATTGGCACTGATGGCTCGGCGAAGCACGCCGTCGGGC
GATAGGAGGGGGACTGCCCTCTTTATAATTCCGTTGGTAGTCTTGGGTTT
AGCAGTCTTCGTCGTGGCGCTCAACATCAGGTATGTGTTGTGAGAATTTG
GAGACGATGGACTATTGGAGAGGTAGGGTGATAGTAGGGCGATGTGGGCA
AAGTATAGTAGGTTATCTGTTACCCTCCCTTAGTTTTCTCTTGAGTGAGG
TGTCACTCGAGGTAAGGACGCTATTCCTGCCGCATGATCAATCCCCATAA
CCCTCCTTTGTGCAACATGTCTGGCAGGCACTACTCGTCGATGTGCGATG
TGGAGACTGCTAGGGACGAGTCGTTGAATAGGGCTGCAATGGAGAGGCGC
ATCTGGGCCCTCGAGAAGGAGGTATTTCTTACCTCTCTCTAAAGATCCTA
TCTCTGTCATGGGCTTGGTGTCATCTCGGTTGTTCGGGAATGAGTTCAGT
GATTGCTGAAGCGCAAGTAACTTAACCCATTCCACCTCAGTGCCTGTGGT
ATATTTAACACGTATGTTGCTTTCTGTCGGGATCCTGGAGGCAATGGAAA
TACAAAAGTAATCAATATGAGTTGGAGATAGGAGTAGAGAGCAGGAGAAA
AGAGGGCGCAACCAAATGTGGCTGATATATTCACTATATAGTATCTAGGG
ACAAGTTGAATTGAGATCGAGGGAATATAAAGCATCAAAACGAAGGGCAT
TAGGTGTCCACCCCACTTGGTACATATACCCTGGCAATCGAGTGAAGTTA
ACGATAGTGATAATTGCACCATGTGGTGAGTTAAACAGTTTGACCATGGA
AGAGGCAGGTTGCTACGCTATTTATTTATATGATTGGCATCCTTTTCATA
CCATCAATCAAGTTTGTACTATTTCCACCATGAACAGATTGCTATGTTTT
TGTTATTTTACCTTTTTACTGTAGGAAATGCTGAAGAGTGCTCATTTTTT
TTTGCTGCCTCCCCCACCTCTGATTTTGAACACTGAACCAAGCTATCAAT
CGCTTAGTTTATGTAAACAGCAATAGTAGAACATTTGTGATGAAGAAGAA
GATCGCATTTTCCCTTCTCTCCTTATCTCTAATTGATACCCTTGCAACTC
CTGCCCCTCTTCTATGTGCCCCCACCACCATCCCAATTCCGTGGATGTGA
CTGATAGCTCCTAGAAAACAGCTTGTTGGTTGAGGGCATTGTACGTGAGT
TGGACACCCTGTTTGGGGCATCTGAGGGCCTCAGCGTGACTGCATTGAAG
ATCCTGGCCCGAAATGTGAGAACCAGCACTCCCTCCTTCCCCACCCCACC
CTATGTGTATCAATCTAGAGTTGAGGAAACCCTAACCCCAACCCTGACCC
TAACCCTAACCTCAACCCTCTTGAATGATATTTTTTTTCCTACTTTTTTG
TTGTACCAAGTCTTGCCTATTCACTGTCTACGCCTTTCCGTATTCTTTCC
TTGTGGATCATACCATGTCTGGTAAGTTGTACCATAATGAAAATCTAGAA
TGTTATCATGAAATATGATTTGTATTGTTTTTATCATGTAAGGTTAGGGG
GGCAGGGGGCAAGTTGCAAAGTGCTCCACACGTACAACAACAGAATATCC
CATATGCTTAATTCAGCAGTATCGAATGATATGCATTGACAGAGGTCTTG
TCAGTACTTGGGACCATAATATCGCTAATAGTATTATTGCACTAGTACAA
AGTAGTATTGCCGTCTGAAAATGAGCAAGATACTTAGATGGTTTTAGTTG
TCTCTGCTCTCACTTTGATTTGACCAATTGTTACCCATTGCATACTCTCC
GACCTAAGAATCATACTGTTGTTTCATGTCTTCTTGCTTGGATCTCTGTT
GGAGTACGCATGCATACATTTTAGATGTATTCCTTAACGCCTCTCCCACT
CCCTACCACTGTTGGTGTCATCATTGCTTTTGTATAGGATGCAGGTGAAG
TAGGTAATCATCGTGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11468:2838..4854+

>mRNA_C-tenellus_contig11468.2.1 ID=mRNA_C-tenellus_contig11468.2.1|Name=mRNA_C-tenellus_contig11468.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=480bp|location=Sequence derived from alignment at C-tenellus_contig11468:2838..4854+ (Choristocarpus tenellus KU2346)
ATGGCTCGGCGAAGCACGCCGTCGGGCGATAGGAGGGGGACTGCCCTCTT
TATAATTCCGTTGGTAGTCTTGGGTTTAGCAGTCTTCGTCGTGGCGCTCA
ACATCAGGCACTACTCGTCGATGTGCGATGTGGAGACTGCTAGGGACGAG
TCGTTGAATAGGGCTGCAATGGAGAGGCGCATCTGGGCCCTCGAGAAGGA
GCTCCTAGAAAACAGCTTGTTGGTTGAGGGCATTGTACGTGAGTTGGACA
CCCTGTTTGGGGCATCTGAGGGCCTCAGCGTGACTGCATTGAAGATCCTG
GCCCGAAATGTGAGAACCAGCACTCCCTCCTTCCCCACCCCACCCTATGT
GTATCAATCTAGAGTTGAGGAAACCCTAACCCCAACCCTGACCCTAACCC
TAACCTCAACCCTCTTGAATGATATTTTTTTTCCTACTTTTTTGTTGTAC
CAAGTCTGTGGATCATACCATGTCTGGTAA
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