mRNA_C-tenellus_contig11464.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11464.1.1
Unique NamemRNA_C-tenellus_contig11464.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11464contigC-tenellus_contig11464:351..2121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size851
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_002120.1
Cds size738
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11464.1.1prot_C-tenellus_contig11464.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11464 414..2071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.2633574-UTR-C-tenellus_contig11464:350..4131680789179.2633574-UTR-C-tenellus_contig11464:350..413Choristocarpus tenellus KU2346UTRC-tenellus_contig11464 351..413 +
1680789179.3331783-UTR-C-tenellus_contig11464:2071..21211680789179.3331783-UTR-C-tenellus_contig11464:2071..2121Choristocarpus tenellus KU2346UTRC-tenellus_contig11464 2072..2121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.2743952-CDS-C-tenellus_contig11464:413..6621680789179.2743952-CDS-C-tenellus_contig11464:413..662Choristocarpus tenellus KU2346CDSC-tenellus_contig11464 414..662 +
1680789179.2835002-CDS-C-tenellus_contig11464:779..8891680789179.2835002-CDS-C-tenellus_contig11464:779..889Choristocarpus tenellus KU2346CDSC-tenellus_contig11464 780..889 +
1680789179.297461-CDS-C-tenellus_contig11464:1075..11811680789179.297461-CDS-C-tenellus_contig11464:1075..1181Choristocarpus tenellus KU2346CDSC-tenellus_contig11464 1076..1181 +
1680789179.3086782-CDS-C-tenellus_contig11464:1444..15961680789179.3086782-CDS-C-tenellus_contig11464:1444..1596Choristocarpus tenellus KU2346CDSC-tenellus_contig11464 1445..1596 +
1680789179.3234267-CDS-C-tenellus_contig11464:1950..20711680789179.3234267-CDS-C-tenellus_contig11464:1950..2071Choristocarpus tenellus KU2346CDSC-tenellus_contig11464 1951..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11464.1.1

>prot_C-tenellus_contig11464.1.1 ID=prot_C-tenellus_contig11464.1.1|Name=mRNA_C-tenellus_contig11464.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=246bp
MRSSSANGRPQRNLGYAESAEVEEPGEGLPLRSNTTKALGEAAEETYYPT
MVEPATPQELRRRCFSCCNAVLQIRGGDDEATMLMDQPQFSEHPLLKQIR
DRVSLQRYLTMEEFVDDFERFAASCLNEKDQSVVIQELNRHVAKTSVPVL
KRVGKASFKGFTQPLIDDIMVEDRKSRQKDPSGLKEFNIGRFFGIAYGHG
LARGARFTGKESKEMEYNRERAEKEDGQRALVAEELQKVWPRHGI*
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mRNA from alignment at C-tenellus_contig11464:351..2121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11464.1.1 ID=mRNA_C-tenellus_contig11464.1.1|Name=mRNA_C-tenellus_contig11464.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1771bp|location=Sequence derived from alignment at C-tenellus_contig11464:351..2121+ (Choristocarpus tenellus KU2346)
GATTGATGTTTTGGTTTGTTTGAGAGATGGCACTCTGGCCGTGGCTACCC
TAAGCATATCGAGATGAGGTCGAGCTCCGCCAACGGGAGGCCACAGAGGA
ACTTGGGATATGCAGAAAGTGCTGAGGTGGAGGAACCTGGTGAAGGATTA
CCGCTCAGGTCTAATACGACTAAGGCGCTAGGTGAAGCCGCTGAAGAGAC
CTACTATCCAACTATGGTGGAGCCAGCGACTCCGCAGGAATTGAGGAGGC
GATGTTTTTCATGTTGCAATGCCGTACTTCAAATTCGTGGGGGAGATGAC
GAGGCAACGATGGTAAGCTCCCCATGATTGAATCGATGTTCTTGCAGGTC
AATATTTGGCTCCACCTTACCCCACCAAAATTTAACCTCCCCCTAATCGG
AAATAATTTCATCTCATGTTGACCCACAGCTGATGGATCAGCCTCAGTTC
AGCGAACACCCGCTTTTAAAACAGATAAGAGACCGTGTGTCGCTGCAGAG
ATACCTCACGATGGAGGAATTTGTGGACGACTTTGAAAGGTGAGTGGTGT
GCCTACATACCATGACCAGACTATTCATGAGACCACGTTGCCAAGGGAGG
TTCATTGCAAATGAGGACCTTAGGATATATGCAATCCGTCTTGTTCAAAT
CGTTTTTACCGGGCGAGGGATGATTAAAACTCTAATTGTGCCTCTCTCGG
TGTGATACTGCATTTCGATCTACAGGTTTGCAGCTTCTTGTCTGAATGAA
AAAGATCAATCCGTAGTCATTCAGGAGCTGAACAGACATGTGGCCAAGAC
CTCTGTTCCCGTTCTAAAGCGTGTGGGCAAGGTAGGCTTCTTTCACCCAG
GCGTTCGGCAAACACGACATGTCGCTATCTGTACTTACTGGTGCCTTAGA
TACTGCTAGTGCCGAGAAGTCAAGCATTCTTGAGTATATGGACGGCTTGA
AGTTCTTTTTAGTGGACCCTAGTTCTTGATTGTGCTAATGTTGGGTCATC
AAGACAGGTTGGTAATCTTGAGCATTGTGTGTTCCTCTTTCCTCATGTCT
GGCTTCATGTGCCTCAATCCAATTTCCCACATGTATGGATCCAGGCATCT
TTCAAGGGCTTCACACAGCCACTGATTGACGACATTATGGTCGAGGATCG
AAAATCACGGCAGAAGGATCCGTCCGGTCTTAAAGAGTTCAATATTGGAC
GCTTCTTTGGGATTGCATATGGACATGGGCTGGCAAGGGGGGCAAGGTAG
GACACAATGTTGGGTCTACAAGAGGGTGGTGAGACTTCCTCCATCCATTG
ATGTCTTGCAGCATCATCAGGAACAGTAGAGGTGGACAGTATTGTAGTGC
TTTGTGAGGTACTGAAATCCTTTCAGAGTGTGGTACACCCCCCCATTCAA
ATGATGACCTTTAGTTGAACCAGAACAGTGCCATTGGCAAGACCATGGTA
AATTTGAAGGCTCATAAATTGTCAAAAAGCACACTGCCTCTAGTGACAGC
AGGGGAGATTCTTGGCATTTGAACTTTGTTTTCATGTCCGCTGCCCTCAC
TTCCTCTTGCCCAACCCTTAGATCACCCTTGACCTATGACCCCATTCAAG
GTTTACTGGAAAGGAGAGCAAGGAGATGGAGTACAATCGGGAAAGAGCCG
AAAAGGAGGATGGACAAAGAGCTCTTGTGGCAGAAGAGCTGCAGAAGGTA
TGGCCTAGACATGGTATCTGACTTCATGCTTTCACCTGAACTTTTTCTGT
GCTCCTGTATTAAAGTGTGTT
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Coding sequence (CDS) from alignment at C-tenellus_contig11464:351..2121+

>mRNA_C-tenellus_contig11464.1.1 ID=mRNA_C-tenellus_contig11464.1.1|Name=mRNA_C-tenellus_contig11464.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=738bp|location=Sequence derived from alignment at C-tenellus_contig11464:351..2121+ (Choristocarpus tenellus KU2346)
ATGAGGTCGAGCTCCGCCAACGGGAGGCCACAGAGGAACTTGGGATATGC
AGAAAGTGCTGAGGTGGAGGAACCTGGTGAAGGATTACCGCTCAGGTCTA
ATACGACTAAGGCGCTAGGTGAAGCCGCTGAAGAGACCTACTATCCAACT
ATGGTGGAGCCAGCGACTCCGCAGGAATTGAGGAGGCGATGTTTTTCATG
TTGCAATGCCGTACTTCAAATTCGTGGGGGAGATGACGAGGCAACGATGC
TGATGGATCAGCCTCAGTTCAGCGAACACCCGCTTTTAAAACAGATAAGA
GACCGTGTGTCGCTGCAGAGATACCTCACGATGGAGGAATTTGTGGACGA
CTTTGAAAGGTTTGCAGCTTCTTGTCTGAATGAAAAAGATCAATCCGTAG
TCATTCAGGAGCTGAACAGACATGTGGCCAAGACCTCTGTTCCCGTTCTA
AAGCGTGTGGGCAAGGCATCTTTCAAGGGCTTCACACAGCCACTGATTGA
CGACATTATGGTCGAGGATCGAAAATCACGGCAGAAGGATCCGTCCGGTC
TTAAAGAGTTCAATATTGGACGCTTCTTTGGGATTGCATATGGACATGGG
CTGGCAAGGGGGGCAAGGTTTACTGGAAAGGAGAGCAAGGAGATGGAGTA
CAATCGGGAAAGAGCCGAAAAGGAGGATGGACAAAGAGCTCTTGTGGCAG
AAGAGCTGCAGAAGGTATGGCCTAGACATGGTATCTGA
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