mRNA_C-tenellus_contig11450.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11450.2.1
Unique NamemRNA_C-tenellus_contig11450.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11450.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11450contigC-tenellus_contig11450:804..1901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1100
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1077
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.0675683-UTR-C-tenellus_contig11450:803..8241680789179.0675683-UTR-C-tenellus_contig11450:803..824Choristocarpus tenellus KU2346UTRC-tenellus_contig11450 804..824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789179.0764546-CDS-C-tenellus_contig11450:824..19011680789179.0764546-CDS-C-tenellus_contig11450:824..1901Choristocarpus tenellus KU2346CDSC-tenellus_contig11450 825..1901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11450.2.1prot_C-tenellus_contig11450.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11450 825..1901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11450.2.1

>prot_C-tenellus_contig11450.2.1 ID=prot_C-tenellus_contig11450.2.1|Name=mRNA_C-tenellus_contig11450.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=359bp
MRNFSLMDSAKRIFGWLRKRIMHSPLLLLRLPQVVCSSYTRALVSFLQLW
MTGSCQPRWVEKRVNPLHTLTQLELLRSRMMAMDLVICDQLLLHQFLSAL
GPDYDTEVDLMASQRTLSRADVKRAINEKYASIQSRNVSKPKNSHALVPG
NSTYSKGQSQRIDQDCGGRGKFRGGKKNNSSDSNTKRSERIHRDRCGKSG
HNQVGSPRYTCTKCGGCAHSAAIGTSTLMTTVVNGAEKDSTKDETSQNTV
GSVLSSGNHELFALLTATEDSTSRNAPGKCGVDKCLVSSVGGDVLREEWI
FGSVASCHMTNMRKFIANYKACLEDQKIVTASQDPFSIAGHGDLTIMFPS
RDDLLIYKL
back to top

mRNA from alignment at C-tenellus_contig11450:804..1901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11450.2.1 ID=mRNA_C-tenellus_contig11450.2.1|Name=mRNA_C-tenellus_contig11450.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1098bp|location=Sequence derived from alignment at C-tenellus_contig11450:804..1901+ (Choristocarpus tenellus KU2346)
CAATTAACCAGGAGCGCTCCCATGAGGAACTTCTCGCTGATGGATTCAGC
GAAAAGGATATTTGGATGGCTGAGGAAGCGTATTATGCACTCACCGTTGC
TCTTGTTGCGCCTTCCACAGGTAGTTTGTTCTTCTTACACCAGAGCCCTA
GTGAGCTTTTTGCAGCTGTGGATGACTGGTTCATGCCAACCACGGTGGGT
AGAGAAGAGGGTAAACCCACTTCACACTCTGACACAACTCGAGCTCCTAC
GGAGCAGGATGATGGCAATGGACCTTGTCATATGCGACCAATTGCTACTT
CATCAGTTTCTGAGTGCGCTGGGACCTGACTACGACACAGAGGTAGACTT
GATGGCTTCCCAGAGGACATTATCTCGAGCGGATGTAAAAAGGGCGATTA
ATGAAAAGTATGCCTCGATACAGTCAAGGAATGTATCAAAACCCAAGAAC
AGTCACGCCCTAGTCCCTGGAAATTCAACCTACTCCAAGGGTCAGTCTCA
ACGTATCGATCAAGACTGTGGAGGGAGAGGGAAGTTCCGAGGAGGAAAGA
AAAATAATAGTTCTGATTCCAACACCAAACGTTCGGAGAGGATTCATCGT
GACAGGTGTGGCAAGAGTGGACACAACCAGGTGGGTTCCCCAAGGTATAC
TTGCACTAAGTGTGGTGGGTGTGCTCATAGTGCAGCCATAGGTACTTCGA
CCTTAATGACCACGGTAGTAAATGGGGCAGAAAAGGATTCGACCAAGGAT
GAAACTTCCCAGAATACTGTGGGAAGTGTGCTCAGCAGTGGCAACCACGA
GTTATTCGCACTACTGACTGCAACAGAGGACTCTACGAGCAGGAATGCTC
CAGGCAAGTGTGGGGTCGATAAGTGTCTGGTGTCAAGTGTTGGGGGTGAT
GTATTGAGAGAAGAGTGGATATTCGGGAGTGTGGCCTCGTGTCACATGAC
CAACATGAGGAAGTTCATTGCTAACTACAAGGCTTGTCTAGAGGATCAAA
AGATAGTGACGGCTAGTCAGGACCCCTTTAGTATTGCGGGTCATGGTGAT
CTGACAATAATGTTTCCTTCGAGGGATGACTTGCTCATCTACAAATTG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11450:804..1901+

>mRNA_C-tenellus_contig11450.2.1 ID=mRNA_C-tenellus_contig11450.2.1|Name=mRNA_C-tenellus_contig11450.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1077bp|location=Sequence derived from alignment at C-tenellus_contig11450:804..1901+ (Choristocarpus tenellus KU2346)
ATGAGGAACTTCTCGCTGATGGATTCAGCGAAAAGGATATTTGGATGGCT
GAGGAAGCGTATTATGCACTCACCGTTGCTCTTGTTGCGCCTTCCACAGG
TAGTTTGTTCTTCTTACACCAGAGCCCTAGTGAGCTTTTTGCAGCTGTGG
ATGACTGGTTCATGCCAACCACGGTGGGTAGAGAAGAGGGTAAACCCACT
TCACACTCTGACACAACTCGAGCTCCTACGGAGCAGGATGATGGCAATGG
ACCTTGTCATATGCGACCAATTGCTACTTCATCAGTTTCTGAGTGCGCTG
GGACCTGACTACGACACAGAGGTAGACTTGATGGCTTCCCAGAGGACATT
ATCTCGAGCGGATGTAAAAAGGGCGATTAATGAAAAGTATGCCTCGATAC
AGTCAAGGAATGTATCAAAACCCAAGAACAGTCACGCCCTAGTCCCTGGA
AATTCAACCTACTCCAAGGGTCAGTCTCAACGTATCGATCAAGACTGTGG
AGGGAGAGGGAAGTTCCGAGGAGGAAAGAAAAATAATAGTTCTGATTCCA
ACACCAAACGTTCGGAGAGGATTCATCGTGACAGGTGTGGCAAGAGTGGA
CACAACCAGGTGGGTTCCCCAAGGTATACTTGCACTAAGTGTGGTGGGTG
TGCTCATAGTGCAGCCATAGGTACTTCGACCTTAATGACCACGGTAGTAA
ATGGGGCAGAAAAGGATTCGACCAAGGATGAAACTTCCCAGAATACTGTG
GGAAGTGTGCTCAGCAGTGGCAACCACGAGTTATTCGCACTACTGACTGC
AACAGAGGACTCTACGAGCAGGAATGCTCCAGGCAAGTGTGGGGTCGATA
AGTGTCTGGTGTCAAGTGTTGGGGGTGATGTATTGAGAGAAGAGTGGATA
TTCGGGAGTGTGGCCTCGTGTCACATGACCAACATGAGGAAGTTCATTGC
TAACTACAAGGCTTGTCTAGAGGATCAAAAGATAGTGACGGCTAGTCAGG
ACCCCTTTAGTATTGCGGGTCATGGTGATCTGACAATAATGTTTCCTTCG
AGGGATGACTTGCTCATCTACAAATTG
back to top