mRNA_C-tenellus_contig11442.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11442.1.1
Unique NamemRNA_C-tenellus_contig11442.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: D7FTH9_ECTSI (Diphosphomevalonate decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-18
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 MASIVDPRLCVTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            M   +D RLCVTCSAPTNIAVIKYWGKDS+ALNTPINSSASVTLSQ
Sbjct:    1 MTPAIDSRLCVTCSAPTNIAVIKYWGKDSVALNTPINSSASVTLSQ 46
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: A0A835YQZ6_9STRA (Diphosphomevalonate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.260e-14
Identity = 34/41 (82.93%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   16 DPRLCVTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            D RLCVTCSAPTNIA IKYWGK S  LNTPINSS SVTL Q
Sbjct:    5 DERLCVTCSAPTNIATIKYWGKASAELNTPINSSVSVTLHQ 45
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: A0A225VS49_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VS49_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.410e-13
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   34 TCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            TCSAPTNIAVIKYWGKD +ALNTP+NSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDDVALNTPMNSSVSVTLHQ 39
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: W2PHI1_PHYPN (Diphosphomevalonate decarboxylase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PHI1_PHYPN)

HSP 1 Score: 68.9 bits (167), Expect = 3.210e-13
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:   34 TCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            TCSAPTNIAVIKYWGKD++ALNTPINSS SVTL Q
Sbjct:    5 TCSAPTNIAVIKYWGKDNVALNTPINSSVSVTLHQ 39
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: A0A067CL82_SAPPC (Diphosphomevalonate decarboxylase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CL82_SAPPC)

HSP 1 Score: 70.9 bits (172), Expect = 5.250e-13
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   31 VTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            VTCS PTNIAVIKYWGKDS+ALNTPINSS SVTL+Q
Sbjct:    4 VTCSTPTNIAVIKYWGKDSVALNTPINSSVSVTLNQ 39
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: A0A1W0A6I2_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6I2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.120e-13
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   31 VTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            VTCS PTNIAVIKYWGKDS+ALNTPINSS SVTL+Q
Sbjct:  166 VTCSTPTNIAVIKYWGKDSVALNTPINSSVSVTLNQ 201
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: A0A3R7D131_9STRA (Diphosphomevalonate decarboxylase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D131_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.400e-12
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   31 VTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            VTCS PTNIAVIKYWGKD++ALNTP+NSS SVTL+Q
Sbjct:   12 VTCSTPTNIAVIKYWGKDNVALNTPLNSSVSVTLNQ 47
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BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: A0A6A5A8I4_9STRA (Diphosphomevalonate decarboxylase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8I4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.690e-12
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   31 VTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            VTCS PTNIAVIKYWGKD++ALNTP+NSS SVTL+Q
Sbjct:    4 VTCSTPTNIAVIKYWGKDNVALNTPLNSSVSVTLNQ 39
[Close]
BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: A0A6G0XPY7_9STRA (Diphosphomevalonate decarboxylase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPY7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.750e-12
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   31 VTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            VTCS PTNIAVIKYWGKD++ALNTP+NSS SVTL+Q
Sbjct:    4 VTCSTPTNIAVIKYWGKDNVALNTPLNSSVSVTLNQ 39
[Close]
BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Match: W4HDK2_9STRA (Diphosphomevalonate decarboxylase n=10 Tax=Aphanomyces TaxID=100860 RepID=W4HDK2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.760e-12
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   31 VTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQ 138
            VTCS PTNIAVIKYWGKD++ALNTP+NSS SVTL+Q
Sbjct:    4 VTCSTPTNIAVIKYWGKDNVALNTPLNSSVSVTLNQ 39
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11442.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTH9_ECTSI1.880e-1886.96Diphosphomevalonate decarboxylase n=2 Tax=Ectocarp... [more]
A0A835YQZ6_9STRA9.260e-1482.93Diphosphomevalonate decarboxylase n=1 Tax=Tribonem... [more]
A0A225VS49_9STRA2.410e-1385.71Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]
W2PHI1_PHYPN3.210e-1388.57Diphosphomevalonate decarboxylase n=1 Tax=Phytopht... [more]
A0A067CL82_SAPPC5.250e-1388.89Diphosphomevalonate decarboxylase n=3 Tax=Saproleg... [more]
A0A1W0A6I2_9STRA6.120e-1388.89Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]
A0A3R7D131_9STRA2.400e-1283.33Diphosphomevalonate decarboxylase (Fragment) n=1 T... [more]
A0A6A5A8I4_9STRA2.690e-1283.33Diphosphomevalonate decarboxylase n=1 Tax=Aphanomy... [more]
A0A6G0XPY7_9STRA2.750e-1283.33Diphosphomevalonate decarboxylase n=1 Tax=Aphanomy... [more]
W4HDK2_9STRA2.760e-1283.33Diphosphomevalonate decarboxylase n=10 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11442contigC-tenellus_contig11442:4639..4806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTH9
Preferred nameMVD
PFAMsGHMP_kinases_N
Model size168
Max annot lvl2759|Eukaryota
KEGG rclassRC00453
KEGG koko:K01597
KEGG ReactionR01121
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00095
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004163,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006066,GO:0006084,GO:0006139,GO:0006163,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006637,GO:0006644,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008284,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009889,GO:0009987,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016829,GO:0016830,GO:0016831,GO:0019216,GO:0019218,GO:0019222,GO:0019287,GO:0019538,GO:0019637,GO:0019693,GO:0030544,GO:0031072,GO:0031907,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034645,GO:0035383,GO:0036211,GO:0042127,GO:0042221,GO:0042493,GO:0042579,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043603,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045540,GO:0046165,GO:0046465,GO:0046483,GO:0046490,GO:0046890,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051186,GO:0055086,GO:0062012,GO:0065007,GO:0070013,GO:0070085,GO:0071704,GO:0072521,GO:0080090,GO:0090181,GO:0090407,GO:0097384,GO:0106118,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Exons1
Evalue3.08e-19
EggNOG OGsCOG3407@1|root,KOG2833@2759|Eukaryota
EC4.1.1.33
Descriptiondiphosphomevalonate decarboxylase activity
Cds size168
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.6781898-CDS-C-tenellus_contig11442:4638..48061680789178.6781898-CDS-C-tenellus_contig11442:4638..4806Choristocarpus tenellus KU2346CDSC-tenellus_contig11442 4639..4806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11442.1.1prot_C-tenellus_contig11442.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11442 4639..4806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11442.1.1

>prot_C-tenellus_contig11442.1.1 ID=prot_C-tenellus_contig11442.1.1|Name=mRNA_C-tenellus_contig11442.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=56bp
MASIVDPRLCVTCSAPTNIAVIKYWGKDSIALNTPINSSASVTLSQVMMC
VNAIT*
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mRNA from alignment at C-tenellus_contig11442:4639..4806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11442.1.1 ID=mRNA_C-tenellus_contig11442.1.1|Name=mRNA_C-tenellus_contig11442.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=168bp|location=Sequence derived from alignment at C-tenellus_contig11442:4639..4806+ (Choristocarpus tenellus KU2346)
ATGGCATCTATAGTGGACCCACGACTGTGCGTAACGTGCTCCGCCCCTAC
GAACATTGCTGTTATCAAGTACTGGGGTAAGGATAGTATCGCTCTCAATA
CCCCGATCAACTCGTCTGCAAGCGTCACCCTCAGTCAGGTGATGATGTGT
GTGAACGCGATAACGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11442:4639..4806+

>mRNA_C-tenellus_contig11442.1.1 ID=mRNA_C-tenellus_contig11442.1.1|Name=mRNA_C-tenellus_contig11442.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=168bp|location=Sequence derived from alignment at C-tenellus_contig11442:4639..4806+ (Choristocarpus tenellus KU2346)
ATGGCATCTATAGTGGACCCACGACTGTGCGTAACGTGCTCCGCCCCTAC
GAACATTGCTGTTATCAAGTACTGGGGTAAGGATAGTATCGCTCTCAATA
CCCCGATCAACTCGTCTGCAAGCGTCACCCTCAGTCAGGTGATGATGTGT
GTGAACGCGATAACGTAG
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