mRNA_C-tenellus_contig11420.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11420.1.1
Unique NamemRNA_C-tenellus_contig11420.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11420.1.1 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 9.510e-48
Identity = 102/215 (47.44%), Postives = 131/215 (60.93%), Query Frame = 1 
Query:    7 WITIVDEGTNEQYYYNSVTAETSWELGEEERIASGIGDNNSNEEKGQQGSVSISEEIGQQSNID--WQHEVLSEFHVPEEVSELAGRSGSAQILPRTTTGELSKLIHWYFTGVQAGDPYREHFVTGNNWNHEHKEFEPKLSFFAFESAVEHAEHYWVEEAEAPFRARLRRPKSKFSRDITKWEKRTADRK----RGHFSFFKPIAPLWVKVSWGG 633
            W+   D+   + Y+ N+ T E+SW+LG +ER+ASGI   +  ++    G  S S+ +  +S+I   W+ EVL  F VP+EVSE  GR+GSA I PRT  G  S+L  W    ++A DPYREHF TG  W  EH EFEPKL F+AF++AVEH E YWVEEAEAPFR RL+R   KFSRDI  WE R   +K    +G+     P   L     WGG
Sbjct:   11 WVEEQDDD-GDVYFVNADTMESSWDLGTDERLASGIYHPSGGDDDALIGPYSSSQTLEAESSISSSWRDEVLVGFQVPQEVSEAVGRAGSAHIWPRTVDGRPSRLERWDV--LKASDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVERYWVEEAEAPFRCRLQRDGLKFSRDIATWEARAPAKKNDNDKGNSGVGSPGGDLDGDEHWGG 222
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11420.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG0_ECTSI9.510e-4847.44WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11420contigC-tenellus_contig11420:5..2036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size711
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-16_002840.1
Cds size711
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11420.1.1prot_C-tenellus_contig11420.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11420 5..2036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789178.0891213-CDS-C-tenellus_contig11420:4..1361680789178.0891213-CDS-C-tenellus_contig11420:4..136Choristocarpus tenellus KU2346CDSC-tenellus_contig11420 5..136 -
1680789178.098765-CDS-C-tenellus_contig11420:456..5761680789178.098765-CDS-C-tenellus_contig11420:456..576Choristocarpus tenellus KU2346CDSC-tenellus_contig11420 457..576 -
1680789178.1099825-CDS-C-tenellus_contig11420:993..11251680789178.1099825-CDS-C-tenellus_contig11420:993..1125Choristocarpus tenellus KU2346CDSC-tenellus_contig11420 994..1125 -
1680789178.1212797-CDS-C-tenellus_contig11420:1395..15121680789178.1212797-CDS-C-tenellus_contig11420:1395..1512Choristocarpus tenellus KU2346CDSC-tenellus_contig11420 1396..1512 -
1680789178.1327899-CDS-C-tenellus_contig11420:1639..16881680789178.1327899-CDS-C-tenellus_contig11420:1639..1688Choristocarpus tenellus KU2346CDSC-tenellus_contig11420 1640..1688 -
1680789178.140636-CDS-C-tenellus_contig11420:1736..18311680789178.140636-CDS-C-tenellus_contig11420:1736..1831Choristocarpus tenellus KU2346CDSC-tenellus_contig11420 1737..1831 -
1680789178.1490164-CDS-C-tenellus_contig11420:1970..20361680789178.1490164-CDS-C-tenellus_contig11420:1970..2036Choristocarpus tenellus KU2346CDSC-tenellus_contig11420 1971..2036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11420.1.1

>prot_C-tenellus_contig11420.1.1 ID=prot_C-tenellus_contig11420.1.1|Name=mRNA_C-tenellus_contig11420.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=237bp
SSWITIVDEGTNEQYYYNSVTAETSWELGEEERIASGIGDNNSNEEKGQQ
GSVSISEEIGQQSNIDWQHEVLSEFHVPEEVSELAGRSGSAQILPRTTTG
ELSKLIHWYFTGVQAGDPYREHFVTGNNWNHEHKEFEPKLSFFAFESAVE
HAEHYWVEEAEAPFRARLRRPKSKFSRDITKWEKRTADRKRGHFSFFKPI
APLWVKVSWGGGGGGGGWGGRGGGGGGEGGGGGWWS*
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mRNA from alignment at C-tenellus_contig11420:5..2036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11420.1.1 ID=mRNA_C-tenellus_contig11420.1.1|Name=mRNA_C-tenellus_contig11420.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2032bp|location=Sequence derived from alignment at C-tenellus_contig11420:5..2036- (Choristocarpus tenellus KU2346)
TCCTCATGGATCACGATAGTGGACGAAGGCACAAATGAACAGTACTACTA
TAACTCAGTGACTGCGGTGGGTGCTTTAAAGTCAGTATTGACCTCACATT
CTTCCTGCAACACAGAGTCTTCTTTGACTCCAACTGCTAAACTTTCCTTA
CCGTAGATTTAAATGACTATCACTATTTTTATTCAGCCCCTTCCCTTCGT
CCCAGGAGACATCATGGGAGCTCGGGGAGGAGGAGAGAATCGCATCAGGC
ATTGGTGACAACAACAGTAATGAAGAGAAGGGTCAACAGGGCAGTGTCTC
GTGGGAGCTGGTACAGGAAGAGGCGATCACATCAGATATTTTTCACAGCA
TCAGTGAAGAGATAGGTCAACAGAGCAACATTGACTGGCAGCACGAGGTG
AAAGCTTGAGCTGTAAATGTTGGTTGGATGTTAGCTCTGCTACATAACAA
CCACAGCAGGGCATATTCTTCTTACCTATTCTGACATTTGAATAATTGCT
ATACACCTGGGCCACGTAAGTCAGGTACTAAGTGAATTCCACGTCCCTGA
AGAGGTATCTGAGCTTGCAGGCAGAAGCGGCTCAGCACAGATATTGCCAC
GAACCACAACAGGGGAGTTATCAAAGCTGATCCATTGGTATGTCATCAAG
GCAAGAAAACATAAAGAGTGCAACAGAAGTAAGTTACTTTAACTCTGGAG
TAGTGTGGAGAATTAGAGCTTCCAAATTCAGGTTAACAGAATACCCTAAT
TGACGTGCCAGAATCTTTCCCGCACCAGGTTCCATTGCATTTGCCAATAG
ATCTTACAAAGGCATTTCAAGAATCATTACCATTCATACTGATGATCCAT
TTTCACCTAAGACGCTTGATGCGCAATGAGAGATGCCCATTTTCTGTTCA
CTCACCAAAAGTTCACTGGTGTGCAGGCTGGTGACCCCTACCGGGAGCAC
TTTGTCACTGGCAACAACTGGAATCACGAGCACAAAGAATTTGAGCCCAA
ACTGAGTTTCTTCGCTTTTGAAAGTGCTGTCGAACATGCAGAGGTAAGAT
GAGTGTTGATCATACCTCTGCTACCTTCTTGAAACGTTAATCAAATAATC
AAGTACTCCGGAACACAAAGAACTGCATGACACAAATCACATCAGATCAC
ACAGCAGTTGCTCACGCTGATGAGTTTGTCCGAAGGCACATTCTGGACAT
CAACTGCCTTCTTATTGAAGTACGGAATGAATACCCCAGAATGGTAATAT
GACCCTACAGATCACACACTTGGATGATAAACACATAGATGATTATAGCA
GTGTATTCACACCACTTGCTGCCCTGAGTACCTCACTCCACAAATCAATA
GTGCTTGATAATGTATGTACCTACCTCTAAACCCCCAAACAAACAAATAC
ATGTACACAGGCACACATGAATAAAAACATCCTTTGAATTACTCCTCACG
AACAAACCAGCATTACTGGGTGGAAGAAGCAGAGGCACCCTTCCGGGCTC
GTCTTCGGAGACCAAAATCAAAATTCTCACGAGACATTACAAAGTGGGAG
AAGAGGACCGCTGATAGGAAAAGAGGACATGTTGAATTCTTCGCTTTTCC
ATTGAGTGTACACAGCTCTCACGCACACTATGTGGTGAGTACACCTTGGA
TATATACTAGGGTGAGCCGTAAGTCAACACCAATATATCTATCCTCCAGT
TTATGTCCACCATTGCTTGATCTGATACTCTTTGTTGTCTTCCCAATGCA
GTCAATCTCGATCGAATAACTAGCCCTTGAGAACAATAGCTCATTGTTGA
GTACCTTCATGAGCTATTCCACCAATCAATCCATGTTATACATCGACTAA
GATTTGAGAGGTTTTCATTTTTCGAATCAAGTCCTCGGACACTTTCGAAG
TTTTCATTTTTCAAACCAATTGCACCACTCTGGGTCAAAGTATCTTGGGG
GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGAGGGGGGGGGGGGGGGGGG
GGGAGGGAGGGGGGGGTGGGTGGTGGTCATAA
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Coding sequence (CDS) from alignment at C-tenellus_contig11420:5..2036-

>mRNA_C-tenellus_contig11420.1.1 ID=mRNA_C-tenellus_contig11420.1.1|Name=mRNA_C-tenellus_contig11420.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=711bp|location=Sequence derived from alignment at C-tenellus_contig11420:5..2036- (Choristocarpus tenellus KU2346)
TCCTCATGGATCACGATAGTGGACGAAGGCACAAATGAACAGTACTACTA
TAACTCAGTGACTGCGGAGACATCATGGGAGCTCGGGGAGGAGGAGAGAA
TCGCATCAGGCATTGGTGACAACAACAGTAATGAAGAGAAGGGTCAACAG
GGCAGTGTCTCCATCAGTGAAGAGATAGGTCAACAGAGCAACATTGACTG
GCAGCACGAGGTACTAAGTGAATTCCACGTCCCTGAAGAGGTATCTGAGC
TTGCAGGCAGAAGCGGCTCAGCACAGATATTGCCACGAACCACAACAGGG
GAGTTATCAAAGCTGATCCATTGGTATTTCACTGGTGTGCAGGCTGGTGA
CCCCTACCGGGAGCACTTTGTCACTGGCAACAACTGGAATCACGAGCACA
AAGAATTTGAGCCCAAACTGAGTTTCTTCGCTTTTGAAAGTGCTGTCGAA
CATGCAGAGCATTACTGGGTGGAAGAAGCAGAGGCACCCTTCCGGGCTCG
TCTTCGGAGACCAAAATCAAAATTCTCACGAGACATTACAAAGTGGGAGA
AGAGGACCGCTGATAGGAAAAGAGGACATTTTTCATTTTTCAAACCAATT
GCACCACTCTGGGTCAAAGTATCTTGGGGGGGGGGGGGGGGGGGGGGGGG
GTGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGAGGGAGGGGGGGGTGGGT
GGTGGTCATAA
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