mRNA_C-tenellus_contig1141.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1141.1.1
Unique NamemRNA_C-tenellus_contig1141.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: D8LBE2_ECTSI (Non ribosomal peptide synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBE2_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 8.060e-137
Identity = 210/253 (83.00%), Postives = 231/253 (91.30%), Query Frame = 1
Query:   28 LSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            LSGKV +VTG+SGGIGA+IA TLA AGA V LGARR++ LE +K KIE+ VG  +V+VC+ DVTKRD+VKALVAAA A FGP+D +VNNAGVMY+TNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYC SK+FVEAMSEGLRREVVGTGLKVTTIQPGDCATDL+MNNTD EAA +QGV IG K+GTG+++ QVLQPEDVAAAVLYAVTAP HVAVNEVLVEPRDQ
Sbjct:    3 LSGKVVVVTGSSGGIGAAIASTLASAGANVVLGARRIEELEKVKTKIEAEVGGDRVMVCKVDVTKRDEVKALVAAAEAGFGPVDVMVNNAGVMYFTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCASKYFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLVMNNTDKEAADEQGVAIGVKVGTGSTETQVLQPEDVAAAVLYAVTAPSHVAVNEVLVEPRDQ 255          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: A0A835ZEL1_9STRA (Non ribosomal peptide synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL1_9STRA)

HSP 1 Score: 315 bits (807), Expect = 5.110e-100
Identity = 169/253 (66.80%), Postives = 196/253 (77.47%), Query Frame = 1
Query:   28 LSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            L GKVA VTGASGGIG +IA  LA AGA VA+ ARR D L  +KA IES V    V+V  TDVT+R +VK  V+AA A  GP+D +VNNAGVMY+T+M +L EDEWE  VDVNCKG M G+GAVL GMI+RGSGHIVNISSDAGRR+FP+LAVY G+KFFVEA+SEGLRREVVGTG++VTTIQPGD +TDL++NNTD   A+            GA    VLQP DVA AVLYAVTAPPHVAVNE+++EPRDQ
Sbjct:    4 LQGKVACVTGASGGIGEAIALALAGAGAKVAICARREDQLARVKANIESQVQGCNVLVHTTDVTRRSEVKGFVSAAEAALGPVDIMVNNAGVMYFTHMAHLREDEWEHMVDVNCKGVMNGVGAVLKGMIDRGSGHIVNISSDAGRRVFPALAVYSGTKFFVEALSEGLRREVVGTGVRVTTIQPGDVSTDLVVNNTDAATAAXXXXXXXXXXXXGADVNAVLQPSDVAGAVLYAVTAPPHVAVNEIMIEPRDQ 256          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: A0A7S0WXH8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WXH8_9CHLO)

HSP 1 Score: 292 bits (748), Expect = 2.990e-91
Identity = 154/253 (60.87%), Postives = 190/253 (75.10%), Query Frame = 1
Query:   28 LSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            L GKVA++TG S GIGA IA  LA  G  VAL ARR++ L+ ++  I S    GK I   TDVTKR  V+ALV AA    GP+D LVN AGVMY+T MKNLHEDEWER VD+NCKG + G+ AVL GM++R +GHI+NISSDAGR +FPSL VY  +K FV A+S+GLR+E++GT +KVT IQPGD ATDLIM NTD EAA   GV IG K+GTG  + QVL  ED+A+AV+YAVTAP HV ++E+++EP+DQ
Sbjct:    4 LDGKVAVITGGSSGIGAGIARGLAAEGCAVALAARRVEKLKEVEESITSK--GGKAISVATDVTKRADVRALVKAAEDSLGPVDILVNCAGVMYFTLMKNLHEDEWERQVDINCKGVLNGVAAVLDGMVKRDAGHIINISSDAGRDVFPSLTVYSATKHFVWAISKGLRKELIGTKVKVTDIQPGDVATDLIMENTDKEAADALGVAIGQKVGTGLKRSQVLDVEDIASAVVYAVTAPAHVGIHELMIEPKDQ 254          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: UPI0001CBBBDA (dehydrogenase/reductase SDR family member 11-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBBBDA)

HSP 1 Score: 281 bits (718), Expect = 7.800e-87
Identity = 150/257 (58.37%), Postives = 188/257 (73.15%), Query Frame = 1
Query:   13 DMSQELSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRD 783
            D  + L+G VAIVTGAS GIGA++A+ LA+AGA+VA+ ARR+D L  I+  IE   G G  I  +TDV  +D+VKALV    +  GP+D +VNNAGVMYYT MKNL+ED+WERT+DVNCKG + G+GAVL GMI RG GHIVN+SS+AGRR FP LAVY G+KFFVEAMS  LR+E++GTG+KVTTIQPGD  TDL   NTD EA  +  +         +S    LQ  D+  AV+YAV+ PP+V VNE+L+EPR+
Sbjct:    3 DSDKPLAGSVAIVTGASSGIGAAVAKHLAEAGAMVAMAARRVDKLNEIQESIEK--GGGVAIAVKTDVCNKDEVKALVKHTESTLGPVDIIVNNAGVMYYTLMKNLNEDQWERTIDVNCKGVVNGVGAVLSGMISRGKGHIVNMSSNAGRRAFPGLAVYSGTKFFVEAMSSALRQELIGTGVKVTTIQPGDVKTDLAAENTDKEAIEKYDM---------SSTYDTLQAADIGRAVVYAVSQPPYVGVNEILIEPRE 248          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: D0N6X5_PHYIT (Oxidoreductase, putative n=13 Tax=Phytophthora TaxID=4783 RepID=D0N6X5_PHYIT)

HSP 1 Score: 277 bits (709), Expect = 2.070e-85
Identity = 150/255 (58.82%), Postives = 193/255 (75.69%), Query Frame = 1
Query:   25 ELSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVG-EGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            +LSGKVA++TGASGGIGA+IA  LA AGA VALGARRL+ALE +KA IE  +G  G V++ +TDVTKR+ V+ LV  A   FG +D LVNNAGVM +  +KN+++D WERT+D+NCKGT+ G+ AVL  M+ R SGHIVNISSDAGR++FP L VY  SK FVE +S+ LR E VG+GL+VT+IQPG+ ATDL+ +        ++ +    KL  G S+ +VL+PED+  AVLYAVT PP+VAVNE+LVEPRD+
Sbjct:    6 QLSGKVAVITGASGGIGAAIALELATAGAKVALGARRLEALEIVKASIEQKLGANGNVLIVQTDVTKREAVQNLVTKAEDTFGAVDILVNNAGVMPFELLKNVNQDSWERTIDINCKGTLNGVAAVLPNMLARKSGHIVNISSDAGRKVFPGLGVYSASKMFVEGISQALRLENVGSGLRVTSIQPGNVATDLVKHANAASGVDEEAM----KLYGGPSECEVLKPEDIGRAVLYAVTQPPYVAVNEILVEPRDE 256          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: A0A8K1CMD0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMD0_PYTOL)

HSP 1 Score: 277 bits (708), Expect = 2.630e-85
Identity = 150/255 (58.82%), Postives = 191/255 (74.90%), Query Frame = 1
Query:   25 ELSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEG-KVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            ELSGKV ++TGASGGIGA+IA  LA  GA VALGARR  ALE ++  I   VG   +V++ ETDVTKR+ + ALVAAAVA FGP+D LVNNAGVM +  + N+++D W++TVD+NCKG + GI AVL  M+ER SGHIVNISSDAGR++FP L VY  SK FVEA+S+ LR E VG+GL+VTT+QPG+ AT L+ N   +    ++ +E   + G GAS  ++L+PED+  AV YAVT PP VAVNEVL+EPRD+
Sbjct:    3 ELSGKVVVITGASGGIGAAIATRLAVGGASVALGARRQSALEEVRDAIAQKVGTADRVLIKETDVTKREDLHALVAAAVAQFGPVDILVNNAGVMPFELLSNVNQDSWDKTVDINCKGVLNGIAAVLPAMLERKSGHIVNISSDAGRKVFPGLGVYSASKMFVEAVSQALRLENVGSGLRVTTVQPGNVATSLVENGQSSSGGDKEAME---RYG-GASGYEILRPEDIGNAVFYAVTQPPFVAVNEVLIEPRDE 253          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: A0A6A3JYF5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JYF5_9STRA)

HSP 1 Score: 276 bits (707), Expect = 4.230e-85
Identity = 150/255 (58.82%), Postives = 193/255 (75.69%), Query Frame = 1
Query:   25 ELSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEG-KVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            +LSGKVA+VTGASGGIGA+IA  LA AGA VALGARRL+ALE++KA IE  +G G  V++ +TDVTKR +V+ LV  A    GP+D LVNNAGVM +  +KN+++D W+RT+D+NCKGT+ G+ AVL  M+ R SGHIVNISSDAGR++FP L VY  SK FVE +S+ LR E VG+GL+VT IQPG+ ATDL+ +        ++ +    KL  GAS+ +VL+PED+  AVLYAVT P +VAVNE+LVEPRD+
Sbjct:    7 QLSGKVAVVTGASGGIGAAIALELASAGAKVALGARRLEALETVKANIEHKIGAGDNVLLVQTDVTKRQEVQNLVTKAEEKLGPVDILVNNAGVMPFELLKNVNQDSWDRTIDINCKGTLNGVAAVLPKMLARKSGHIVNISSDAGRKVFPGLGVYSASKMFVEGISQALRLENVGSGLRVTCIQPGNVATDLVKHANAASGVDEEAM----KLYGGASECEVLKPEDIGRAVLYAVTQPAYVAVNEILVEPRDE 257          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: A0A0P1ANZ2_PLAHL (Non ribosomal peptide synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANZ2_PLAHL)

HSP 1 Score: 275 bits (702), Expect = 2.410e-84
Identity = 144/259 (55.60%), Postives = 194/259 (74.90%), Query Frame = 1
Query:   13 DMSQELSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVG-EGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            D + +L GKV ++TGASGGIGA+IA  LAKAGA +ALGARRL+ALE++K  IE   G    ++V +TDVTKR +V+ LV+ A   FG ID LVNNAGVM +  +KN+++D WERT+DVNCKGT+ G+ AVL  M+ R SGHIVNISSDAGR++FP L VY  SK F+E +S+ LR E +G+GL+VT+IQPG+ ATDL+M+   +    ++ +++  K     S+ ++LQ +D+  AVLYAVT PPHVA+NE+LVEPRD+
Sbjct:    4 DSNTQLGGKVVVITGASGGIGAAIALELAKAGAKIALGARRLEALETVKTTIEQKTGINDSILVVQTDVTKRQEVENLVSKAEQTFGAIDILVNNAGVMPFELLKNVNQDSWERTIDVNCKGTLNGVAAVLPKMLARKSGHIVNISSDAGRKVFPGLGVYSASKMFIEGISQALRLENIGSGLRVTSIQPGNVATDLVMHANTSSRVDEEAMKLYGK----PSEFEILQSQDIGRAVLYAVTQPPHVAINEILVEPRDE 258          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: A0A2N5KFC4_9ACTN (Oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5KFC4_9ACTN)

HSP 1 Score: 273 bits (699), Expect = 4.510e-84
Identity = 153/253 (60.47%), Postives = 184/253 (72.73%), Query Frame = 1
Query:   28 LSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            L G+VA+VTGAS GIGA++A  LA+ G  VAL ARR DAL  ++A +    G  + IV  TDVT R+ V ALVA A    GP+DFLVN AGVMYYT M+NL E+EWE+TV+VNCKGT+  +GAVL GM+ RG GHIV ISSDAGR++F  LAVY  SKFFVEA+S+GLR E  GTGLKVTTIQPG+ ATDL   +TD EA    G   GA+         VL PEDVAA+++YA++ P HVAVNEVLVEPRD+
Sbjct:    6 LDGRVAVVTGASSGIGAAVAGALAREGVGVALAARRSDALRGVQAGLG---GAARSIVVATDVTDREGVGALVARAEGELGPVDFLVNCAGVMYYTLMRNLCEEEWEKTVEVNCKGTLNCVGAVLPGMVSRGRGHIVTISSDAGRKVFAGLAVYSASKFFVEALSQGLRLETAGTGLKVTTIQPGNVATDLAAMSTDGEALKLYGQPTGAR---------VLDPEDVAASIVYALSQPEHVAVNEVLVEPRDE 246          
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Match: A0A6J4RDF8_9ACTN (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4RDF8_9ACTN)

HSP 1 Score: 271 bits (693), Expect = 3.860e-83
Identity = 148/255 (58.04%), Postives = 187/255 (73.33%), Query Frame = 1
Query:   22 QELSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAKIESVVGEGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYTNMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRRIFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNTDNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEVLVEPRDQ 786
            + L G+VA+VTGAS GIGA++A  LA+ GA VAL ARR D L  ++A +E   G  + +V  TDVT R+QVKALV  A    GP++ LVN AG+MYYT M+NL EDEWERTV+VNCKG +  +GAVL GM+ RG GH+V ISSDAGR++FP L+VY  SKFFVEA+S+GLR E  GTG+KVTTIQPG+ ATDL   +TD EA     +E+  + G    + +VL PEDVAA+V+YA+  P H AVNE+LVEPRD+
Sbjct:    4 ESLQGRVAVVTGASSGIGAAVARALAREGAHVALAARRRDVLLDVQAGLEEPGGMVRSLVAATDVTDREQVKALVERAEGELGPVEILVNCAGIMYYTLMRNLREDEWERTVEVNCKGALNCVGAVLPGMLARGRGHVVTISSDAGRKVFPGLSVYSASKFFVEALSQGLRLETAGTGIKVTTIQPGNVATDLSSLSTDVEA-----LELYGQPG----EARVLDPEDVAASVVYALRQPDHAAVNEILVEPRDE 249          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1141.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBE2_ECTSI8.060e-13783.00Non ribosomal peptide synthase n=2 Tax=Ectocarpus ... [more]
A0A835ZEL1_9STRA5.110e-10066.80Non ribosomal peptide synthase n=1 Tax=Tribonema m... [more]
A0A7S0WXH8_9CHLO2.990e-9160.87Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
UPI0001CBBBDA7.800e-8758.37dehydrogenase/reductase SDR family member 11-like ... [more]
D0N6X5_PHYIT2.070e-8558.82Oxidoreductase, putative n=13 Tax=Phytophthora Tax... [more]
A0A8K1CMD0_PYTOL2.630e-8558.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3JYF5_9STRA4.230e-8558.82Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A0P1ANZ2_PLAHL2.410e-8455.60Non ribosomal peptide synthase n=1 Tax=Plasmopara ... [more]
A0A2N5KFC4_9ACTN4.510e-8460.47Oxidoreductase n=1 Tax=Actinomycetia bacterium Tax... [more]
A0A6J4RDF8_9ACTN3.860e-8358.043-oxoacyl-[acyl-carrier protein] reductase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1141contigC-tenellus_contig1141:3935..6060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBE2
PFAMsAMP-binding,AMP-binding_C,NAD_binding_4,PP-binding,adh_short
Model size1962
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.99e-143
EggNOG OGsCOG1028@1|root,KOG1205@2759|Eukaryota
Ec32 ortholog descriptionDehydrogenase/reductase
Ec32 orthologEc-27_004280.1
Descriptionoxidation-reduction process
Cds size777
COG categoryIQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789177.5828109-UTR-C-tenellus_contig1141:3934..51041680789177.5828109-UTR-C-tenellus_contig1141:3934..5104Choristocarpus tenellus KU2346UTRC-tenellus_contig1141 3935..5104 -
1680789177.6143994-UTR-C-tenellus_contig1141:6045..60601680789177.6143994-UTR-C-tenellus_contig1141:6045..6060Choristocarpus tenellus KU2346UTRC-tenellus_contig1141 6046..6060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789177.5971053-CDS-C-tenellus_contig1141:5104..55981680789177.5971053-CDS-C-tenellus_contig1141:5104..5598Choristocarpus tenellus KU2346CDSC-tenellus_contig1141 5105..5598 -
1680789177.6053076-CDS-C-tenellus_contig1141:5762..60451680789177.6053076-CDS-C-tenellus_contig1141:5762..6045Choristocarpus tenellus KU2346CDSC-tenellus_contig1141 5763..6045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1141.1.1prot_C-tenellus_contig1141.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1141 5105..6045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1141.1.1

>prot_C-tenellus_contig1141.1.1 ID=prot_C-tenellus_contig1141.1.1|Name=mRNA_C-tenellus_contig1141.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=259bp
MSQELSGKVAIVTGASGGIGASIAETLAKAGAVVALGARRLDALESIKAK
IESVVGEGKVIVCETDVTKRDQVKALVAAAVAHFGPIDFLVNNAGVMYYT
NMKNLHEDEWERTVDVNCKGTMFGIGAVLGGMIERGSGHIVNISSDAGRR
IFPSLAVYCGSKFFVEAMSEGLRREVVGTGLKVTTIQPGDCATDLIMNNT
DNEAASQQGVEIGAKLGTGASKEQVLQPEDVAAAVLYAVTAPPHVAVNEV
LVEPRDQA*
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mRNA from alignment at C-tenellus_contig1141:3935..6060-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1141.1.1 ID=mRNA_C-tenellus_contig1141.1.1|Name=mRNA_C-tenellus_contig1141.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2126bp|location=Sequence derived from alignment at C-tenellus_contig1141:3935..6060- (Choristocarpus tenellus KU2346)
CTTAATACTTGCGACATGTCGCAAGAGCTTTCCGGAAAGGTAGCGATAGT TACGGGGGCATCTGGAGGAATTGGGGCAAGTATTGCCGAGACCCTAGCGA AGGCTGGGGCGGTGGTAGCACTGGGTGCTCGGAGGTTGGACGCTTTGGAA AGCATTAAGGCGAAGATAGAGTCTGTGGTTGGCGAGGGTAAGGTGATAGT CTGCGAGACGGATGTGACAAAGCGCGACCAAGTCAAGGCCTTGGTAGCGG CTGCTGTGGCCCATTTTGGTCCTATCGACTTTTTGGTGAACAATGCAGGT ATAGCAGTATTGCAGTATTATTGGTACATCACTCGTCATTTGGCAATGGC AGTAAGTTTATTATAAGTACTACGTAGTGGTCTTCAACCTAGTTCATGAC GGTATCAATTATACTTCCGGCTAACAGACCACAGTTGCAACCACGCTCGA ACTTTGCCACAGGCGTCATGTACTACACTAACATGAAGAACTTGCATGAG GACGAGTGGGAGAGAACTGTGGACGTAAACTGCAAAGGCACGATGTTTGG GATTGGAGCTGTGTTGGGAGGTATGATTGAAAGAGGAAGTGGCCACATTG TGAACATTTCCTCCGATGCAGGCCGGAGGATCTTTCCTTCTCTAGCAGTT TATTGTGGGTCGAAGTTCTTTGTTGAAGCAATGTCTGAGGGTCTGCGAAG GGAGGTTGTAGGCACAGGGCTGAAGGTGACCACTATTCAGCCAGGAGATT GCGCGACAGATCTGATAATGAACAATACGGACAATGAAGCTGCATCGCAG CAAGGGGTGGAGATTGGTGCCAAGTTGGGCACTGGAGCGTCCAAGGAGCA AGTGTTGCAGCCAGAAGACGTTGCTGCCGCAGTACTGTACGCAGTAACTG CACCACCTCATGTCGCAGTCAATGAGGTGCTTGTGGAACCACGCGATCAA GCTTGAACATTGAAAGGCTGTGGCGTATTGAGAAACACTGATCATTGATT TGTGGAAATAACATATACCATCAGGTTAAACCTCTCTTAAGCGGACAGTG AGCCACACTCTTGTGATACTCCTAGAAGATTGATGTAGACCTCTGTCAAG TTCAATTTTTGTGTGCATGTCACCAATGGTATTCAACATATTTACAGTTG TGTATACAATGATGGGTGTAGTAGTAGCAGCTGTGACTGGGTTTTGGTAT GAGCTATGTTTTTAATCCTTCTTTGGTTCCACTGATAATGCCATATCATG GAGAAATATTGTTGGAGCGCCAAGTTTACAAAAAGCCAATGTGCCCTTTC ATATTAGACCATACCTTGGGAGAACTCGAGTGCATGAGTTCAGAGAGCCT ATTGCTACATACCTGTTAAATGTAATGGGCAGTAAGACTAAAGAGGTCTA GCTCTGCTGTATCTTTCCACACTTAGGAAGTTCAAATTTGATGAGGTAGG TCAACATATGACATTGCCTTAAAATCTTGCAGTCCGAGTATTGCGCTTTT TGTGTCAACTGTATTGCCTAGTGACTGCTAATCATGCCGTCAAATTTGTA GTGAATTTGTACACCTACTGCATGGTATCTCTCTCTGTCGCAAAGCTAAT ACTGGGGAAAGTTTTCATGGAACTGGGAGCGTTTATGTCTTCAGACTCCT TACTGTCTTACCCTCCTTCATGAGTGCTGTGAGATCTTAGTCCCTTACAC TTCCAAGTGTGTCCACATGAGCCACATAAGTGTTTGTAACTCTATTTTTG CCAGAGTGTGCAACCTGTAATGTGCCCTATGTACATTGTGTAACCTATCT TGCATATCAATAGTATTGTGAGTAGAGATGCCATGCTCCAGTAGATATTC TCGCTATAGACCAGGGCTGCATGTTAGCTTACTGAAGGATTGTTCCTCAG TTCATACTCATTTTGACCACCTGTGAAGTTCTCGTGTCAACAATGCCATG GGAAAAGAACAGATACCCTCCAAATGCATGGTTTCCTGACTGAAATAACA TCAAATAGGCTTGAGTTTTGGTCATCTCTCGATAGCATGTACCACTTGTG AATATACTCATTATTGTAGTGTATTAGTGATATCCCACAGCCGAAATGTA TGCTTCAGTGCATGTCTATGTATACT
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Coding sequence (CDS) from alignment at C-tenellus_contig1141:3935..6060-

>mRNA_C-tenellus_contig1141.1.1 ID=mRNA_C-tenellus_contig1141.1.1|Name=mRNA_C-tenellus_contig1141.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=777bp|location=Sequence derived from alignment at C-tenellus_contig1141:3935..6060- (Choristocarpus tenellus KU2346)
ATGTCGCAAGAGCTTTCCGGAAAGGTAGCGATAGTTACGGGGGCATCTGG
AGGAATTGGGGCAAGTATTGCCGAGACCCTAGCGAAGGCTGGGGCGGTGG
TAGCACTGGGTGCTCGGAGGTTGGACGCTTTGGAAAGCATTAAGGCGAAG
ATAGAGTCTGTGGTTGGCGAGGGTAAGGTGATAGTCTGCGAGACGGATGT
GACAAAGCGCGACCAAGTCAAGGCCTTGGTAGCGGCTGCTGTGGCCCATT
TTGGTCCTATCGACTTTTTGGTGAACAATGCAGGCGTCATGTACTACACT
AACATGAAGAACTTGCATGAGGACGAGTGGGAGAGAACTGTGGACGTAAA
CTGCAAAGGCACGATGTTTGGGATTGGAGCTGTGTTGGGAGGTATGATTG
AAAGAGGAAGTGGCCACATTGTGAACATTTCCTCCGATGCAGGCCGGAGG
ATCTTTCCTTCTCTAGCAGTTTATTGTGGGTCGAAGTTCTTTGTTGAAGC
AATGTCTGAGGGTCTGCGAAGGGAGGTTGTAGGCACAGGGCTGAAGGTGA
CCACTATTCAGCCAGGAGATTGCGCGACAGATCTGATAATGAACAATACG
GACAATGAAGCTGCATCGCAGCAAGGGGTGGAGATTGGTGCCAAGTTGGG
CACTGGAGCGTCCAAGGAGCAAGTGTTGCAGCCAGAAGACGTTGCTGCCG
CAGTACTGTACGCAGTAACTGCACCACCTCATGTCGCAGTCAATGAGGTG
CTTGTGGAACCACGCGATCAAGCTTGA
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