mRNA_C-tenellus_contig11326.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11326.2.1
Unique NamemRNA_C-tenellus_contig11326.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Match: D8LK93_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK93_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-13
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  350 TNEGSKEDNLLRLLVCSFNVGNSPLEDLSPWIPAGGEGFDLIVIGLQESTYKAPR---QSSPL 529
            T  G +  + +RLLV SFNVGNSPL DL+PW+P GG+GFDLIV+GLQESTY+ PR    SSP 
Sbjct:   85 TERGYEGGDRVRLLVGSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPF 147
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BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Match: A0A7S1CC49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC49_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.900e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:  380 LRLLVCSFNVGNS-PLEDLSPWIPAGGEGFDLIVIGLQESTYK 505
            LR+ VC++NVGN  P  D +PWIPAGG   D+IV+GLQESTYK
Sbjct:   53 LRVHVCTWNVGNKMPRADFAPWIPAGGGDHDVIVVGLQESTYK 95
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BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Match: A0A7S3YA27_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA27_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 1.610e-6
Identity = 22/42 (52.38%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:  380 LRLLVCSFNVGNSPLEDLSPWIPAGGEGFDLIVIGLQESTYK 505
            ++LL+ +FN+GN+ +E++  W+P  GEG+D+I IGLQEST+K
Sbjct:   35 IQLLIGTFNMGNAEIENIGEWLPYEGEGYDVIAIGLQESTFK 76
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BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Match: A0A7S2CQD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQD8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.900e-5
Identity = 19/46 (41.30%), Postives = 31/46 (67.39%), Query Frame = 2 
Query:  380 LRLLVCSFNVGNSPLEDLSPWIPAGGEGFDLIVIGLQESTYKAPRQ 517
             ++ +CS N+GN  + D+  W+P   E  DL+V+G+QESTYK  ++
Sbjct:   88 FKVTICSANIGNKMIRDMDDWVPVCPEHTDLVVLGMQESTYKVKKE 133
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BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Match: A0A8K1CJL7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJL7_PYTOL)

HSP 1 Score: 57.8 bits (138), Expect = 5.430e-5
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  380 LRLLVCSFNVGNS----PLEDLSPWIPAGGEGFDLIVIGLQESTYK 505
            LRLLV S+NVGN+      E +  W+PAGG GFD+I +GLQES+Y+
Sbjct:    3 LRLLVASWNVGNAMPPKSREGVHDWVPAGGGGFDVIAVGLQESSYR 48
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BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Match: A0A329S5J7_9STRA (C2 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5J7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.650e-5
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:  380 LRLLVCSFNVGNS-PLED---LSPWIPAGGEGFDLIVIGLQESTYKAPRQSSPL 529
            L++L+ S+NVGN+ P +D   L+ WIP GG  FD+I +GLQESTYK+ + S  L
Sbjct:   76 LKILIASWNVGNTMPPKDSKLLNEWIPEGGGDFDVIAVGLQESTYKSEKVSENL 129
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BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Match: D0N3U5_PHYIT (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N3U5_PHYIT)

HSP 1 Score: 57.0 bits (136), Expect = 8.820e-5
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:  380 LRLLVCSFNVGNS-PLED---LSPWIPAGGEGFDLIVIGLQESTYKAPRQSSPL 529
            L++L+ S+NVGN+ P +D   L+ WIP GG  FD+I +GLQESTYK  + S  L
Sbjct:    4 LKILIASWNVGNTMPPKDSKLLTEWIPEGGGDFDVIAVGLQESTYKTEKVSENL 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11326.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LK93_ECTSI1.520e-1363.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1CC49_9STRA2.900e-865.12Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3YA27_HETAK1.610e-652.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2CQD8_9STRA2.900e-541.30Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8K1CJL7_PYTOL5.430e-556.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329S5J7_9STRA7.650e-551.85C2 domain-containing protein n=1 Tax=Phytophthora ... [more]
D0N3U5_PHYIT8.820e-551.85Phosphatidylinositol-3,4,5-trisphosphate 5-phospha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11326contigC-tenellus_contig11326:2082..4888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000019582
PFAMsC2,Kinesin
Model size1932
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.95e-06
EggNOG OGsCOG5059@1|root,COG5411@1|root,KOG0245@2759|Eukaryota,KOG0565@2759|Eukaryota,1MCNX@121069|Pythiales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002530.1
DescriptionSource PGD
Cds size1488
COG categoryZ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11326.2.1prot_C-tenellus_contig11326.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11326 2131..4493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789173.305364-UTR-C-tenellus_contig11326:2081..21301680789173.305364-UTR-C-tenellus_contig11326:2081..2130Choristocarpus tenellus KU2346UTRC-tenellus_contig11326 2082..2130 +
1680789173.3561835-UTR-C-tenellus_contig11326:4493..48881680789173.3561835-UTR-C-tenellus_contig11326:4493..4888Choristocarpus tenellus KU2346UTRC-tenellus_contig11326 4494..4888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789173.31476-CDS-C-tenellus_contig11326:2130..24801680789173.31476-CDS-C-tenellus_contig11326:2130..2480Choristocarpus tenellus KU2346CDSC-tenellus_contig11326 2131..2480 +
1680789173.325784-CDS-C-tenellus_contig11326:2804..29101680789173.325784-CDS-C-tenellus_contig11326:2804..2910Choristocarpus tenellus KU2346CDSC-tenellus_contig11326 2805..2910 +
1680789173.335697-CDS-C-tenellus_contig11326:3123..36171680789173.335697-CDS-C-tenellus_contig11326:3123..3617Choristocarpus tenellus KU2346CDSC-tenellus_contig11326 3124..3617 +
1680789173.3471181-CDS-C-tenellus_contig11326:3955..44931680789173.3471181-CDS-C-tenellus_contig11326:3955..4493Choristocarpus tenellus KU2346CDSC-tenellus_contig11326 3956..4493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11326.2.1

>prot_C-tenellus_contig11326.2.1 ID=prot_C-tenellus_contig11326.2.1|Name=mRNA_C-tenellus_contig11326.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=496bp
METPDEESRDLVRDGTTRGVGVMEDSGWGSRDKDEVDLGTEVRSHQGKEN
VCLGTLHSSNHGSRTPCNNTQKPMSMAERFPSQIKGEEEWEETFPDRRGG
TNEGSKEDNLLRLLVCSFNVGNSPLEDLSPWIPAGGEGFDLIVIGLQEST
YKAPRQSSPLPHLEPVRSPPSRWQFGAGGSGLRSPVCPILFSPLDHDVKS
QLSDSGRGGNERPRSCQIPLFISQVGLTAPPTSLERPKSLPNPGLFSGAQ
LAGVRKMAREFPRGITHIPRSFNSESSMSATLDASEVGVRARFGEEGEYA
TVEAAAPLRSTVSAIQGPQEGKKPKGATPHTTTGSTMSALKALGALSSEA
SSPSPSKAVPLSVQSNHRFPWEGTIRPATVIPRMPSDSSPPFRRHSLAAF
GSSLQVDTASSVKVVKNGQAVAGVGDGEYVVGVGKGVVRAAPEGEGLTMK
GAESEQQSVYVDDGEEEDDEDDEEEEEEEEEAIKVFSPALAKGVW*
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mRNA from alignment at C-tenellus_contig11326:2082..4888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11326.2.1 ID=mRNA_C-tenellus_contig11326.2.1|Name=mRNA_C-tenellus_contig11326.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2807bp|location=Sequence derived from alignment at C-tenellus_contig11326:2082..4888+ (Choristocarpus tenellus KU2346)
GAGAGTTAAAAGAGAGTAGAGGACCCTAGAAACGCCGACTAAACGGAATA
TGGAAACCCCAGATGAGGAAAGCAGGGATTTGGTGAGGGACGGGACTACA
AGGGGTGTGGGGGTCATGGAAGACTCAGGCTGGGGTTCTAGGGACAAGGA
CGAGGTGGATTTGGGGACTGAAGTACGTTCTCATCAAGGCAAGGAAAACG
TTTGCCTAGGAACTCTCCATAGTAGTAACCATGGTTCAAGGACACCATGC
AACAATACCCAAAAGCCAATGTCTATGGCAGAACGATTCCCATCGCAGAT
CAAGGGGGAGGAAGAATGGGAAGAAACCTTTCCAGATAGAAGAGGAGGCA
CGAATGAAGGTAGCAAGGAGGACAACCTCCTACGATTACTGGTTTGCAGG
TGGGTTTGAATTGTGTGTCCGTGCATATCGTTCGTTGGAATATTGAAGCT
ACGTGTTCTGACAACCACCTGGACTACTTACTGTGATTGGACATTCTATT
GGAGAGGTGCCAGACCTATCACTAGTTCATCTCATAGACTCCCTCCTAAC
TGAATCAAGGGTATGAAGTAGAAGCTACTGTTGTGCTCAAAGTAGAACGT
ACATAGTTGTTTGTTTCCATGGGCGAAATGGTGAAATGGTTGCCTTTTCT
TCCCTCACCGATTCTCTATACTCCCCCCTCACTGAATGACCTCGCACGGT
GAACTGTGGTTTCTGCATCTCAGCTTCAACGTTGGTAATAGCCCCCTGGA
AGACTTGTCGCCGTGGATACCAGCGGGCGGTGAGGGTTTCGACCTCATAG
TGATTGGACTCCAGGAGAGCACATACAAGGCAAGGGAGGAGAGATAGAAA
GTCAACAAAAATGGTGCACTAGGACTTAAGGCGCATTCGCCTACCTCATC
CCTGCACCTATCCCTCCAGAACATTGCAATACGTTAACGTTCGAAAATCT
GTCTGGAATGTGTAGAGTGATGTGATTCCTCTCATCCTGATATAACCCCC
ACCTTCCCACCTCCCTGACTGTTCAACTAACGCCCACTCTAGGCACCGAG
GCAAAGCTCCCCCCTTCCTCATCTGGAACCAGTCCGGAGCCCCCCCTCAA
GATGGCAGTTTGGGGCAGGAGGAAGTGGACTCCGCTCGCCAGTTTGTCCC
ATCCTCTTCTCACCACTTGACCACGACGTGAAGTCACAGTTAAGCGACTC
TGGTCGAGGTGGGAATGAGAGACCCCGCTCGTGCCAGATCCCCTTGTTTA
TTTCACAGGTGGGGCTTACAGCCCCTCCCACAAGCTTGGAACGCCCAAAG
TCTTTGCCAAACCCTGGACTTTTTTCAGGGGCACAGCTGGCTGGGGTGAG
GAAGATGGCCAGGGAGTTCCCTCGGGGTATCACCCACATTCCACGTTCCT
TCAACAGTGAGTCAAGTATGTCTGCCACTCTTGATGCGTCTGAGGTAGGG
GTGAGGGCAAGATTTGGGGAGGAAGGAGAATATGCAACAGTAGAGGCTGC
AGCACCACTGAGGTCAACGGTGTCTGCAATACAGGGGTGAGTGATCGCTT
GGGGGAGGGTGCTCAGGAAACTGTAGCTGTATGTGGGGCATGCAAGTTCG
AGGCAAGGCAGAAAAAAAGCTGTTACTTTTGTTCCTGGATGTGGACATGT
ATTTATGTGTCCATGATTTTGTTGTTAGTCGTCAGTGTGGTGCTTGCTAG
CATTGTGAGTTTTGTCGAATGCACAAAGGCGTGATACATGCACCCACTGA
ATTATTTCATTCAACCAAATTGACTGGCCTCCTCCCTCCCATCCCTCAAC
CCCTCCACCCCAACCCTATCCTGGTCATTCTCCCCCCTCTTTGTTACCTG
AATCAATGCAATCTGTGTGCTCAGGCCTCAAGAGGGTAAGAAACCGAAGG
GTGCTACCCCTCACACTACCACAGGTTCCACTATGAGCGCCCTGAAGGCC
TTGGGGGCATTGTCCAGTGAAGCATCATCGCCATCCCCGTCCAAGGCTGT
ACCCCTTTCTGTTCAGTCCAATCATCGGTTTCCCTGGGAAGGTACAATCC
GCCCAGCAACTGTAATCCCTCGAATGCCATCCGATTCCTCTCCCCCCTTT
AGGAGGCACAGCTTAGCTGCTTTTGGGTCATCTCTGCAGGTGGACACAGC
ATCATCTGTTAAAGTTGTGAAGAATGGACAGGCAGTGGCAGGAGTGGGTG
ATGGGGAGTATGTTGTGGGAGTGGGAAAAGGTGTAGTCAGAGCAGCACCA
GAGGGGGAAGGGCTGACGATGAAGGGCGCTGAGAGTGAGCAGCAGAGTGT
TTATGTTGATGATGGTGAGGAGGAGGATGACGAGGATGACGAGGAGGAAG
AGGAAGAAGAGGAGGAGGCGATAAAGGTTTTTTCTCCGGCTTTGGCTAAA
GGTGTTTGGTGAGTTTGCTTACTGAGTACTCTGACACCTTGAGTGGAGGT
GAAAACCAATGAAATGACAACATACTCTCTTTTCCCTTGTTACGGGGGAT
GCTCTCTTTATCACTGCTCTTGCATACATCCAGTGGGAATGGGAAAATAA
AGGGGGAGTGGTACGCTTTGGTAGTCGGAATGGGAATGAAAATGATAGTA
TGTAGTTAATCCTCTAGCCCCAGATGACACCTTCCTTTCGAATCTCAGAC
TGCTTGCAGTATGTCCCATGAGAATTTCACTGTGCCATTTCCTGCCCCAC
ATATTGTCCTGAGCAATACTGAAGATTGTACTACGTGTTTCAGAGTAGTC
AGTTCTGCACAAGTGTTGGGGCATAAAAAAAAGCTCTTGGACAGTTATGA
CCAGGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig11326:2082..4888+

>mRNA_C-tenellus_contig11326.2.1 ID=mRNA_C-tenellus_contig11326.2.1|Name=mRNA_C-tenellus_contig11326.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1488bp|location=Sequence derived from alignment at C-tenellus_contig11326:2082..4888+ (Choristocarpus tenellus KU2346)
ATGGAAACCCCAGATGAGGAAAGCAGGGATTTGGTGAGGGACGGGACTAC
AAGGGGTGTGGGGGTCATGGAAGACTCAGGCTGGGGTTCTAGGGACAAGG
ACGAGGTGGATTTGGGGACTGAAGTACGTTCTCATCAAGGCAAGGAAAAC
GTTTGCCTAGGAACTCTCCATAGTAGTAACCATGGTTCAAGGACACCATG
CAACAATACCCAAAAGCCAATGTCTATGGCAGAACGATTCCCATCGCAGA
TCAAGGGGGAGGAAGAATGGGAAGAAACCTTTCCAGATAGAAGAGGAGGC
ACGAATGAAGGTAGCAAGGAGGACAACCTCCTACGATTACTGGTTTGCAG
CTTCAACGTTGGTAATAGCCCCCTGGAAGACTTGTCGCCGTGGATACCAG
CGGGCGGTGAGGGTTTCGACCTCATAGTGATTGGACTCCAGGAGAGCACA
TACAAGGCACCGAGGCAAAGCTCCCCCCTTCCTCATCTGGAACCAGTCCG
GAGCCCCCCCTCAAGATGGCAGTTTGGGGCAGGAGGAAGTGGACTCCGCT
CGCCAGTTTGTCCCATCCTCTTCTCACCACTTGACCACGACGTGAAGTCA
CAGTTAAGCGACTCTGGTCGAGGTGGGAATGAGAGACCCCGCTCGTGCCA
GATCCCCTTGTTTATTTCACAGGTGGGGCTTACAGCCCCTCCCACAAGCT
TGGAACGCCCAAAGTCTTTGCCAAACCCTGGACTTTTTTCAGGGGCACAG
CTGGCTGGGGTGAGGAAGATGGCCAGGGAGTTCCCTCGGGGTATCACCCA
CATTCCACGTTCCTTCAACAGTGAGTCAAGTATGTCTGCCACTCTTGATG
CGTCTGAGGTAGGGGTGAGGGCAAGATTTGGGGAGGAAGGAGAATATGCA
ACAGTAGAGGCTGCAGCACCACTGAGGTCAACGGTGTCTGCAATACAGGG
GCCTCAAGAGGGTAAGAAACCGAAGGGTGCTACCCCTCACACTACCACAG
GTTCCACTATGAGCGCCCTGAAGGCCTTGGGGGCATTGTCCAGTGAAGCA
TCATCGCCATCCCCGTCCAAGGCTGTACCCCTTTCTGTTCAGTCCAATCA
TCGGTTTCCCTGGGAAGGTACAATCCGCCCAGCAACTGTAATCCCTCGAA
TGCCATCCGATTCCTCTCCCCCCTTTAGGAGGCACAGCTTAGCTGCTTTT
GGGTCATCTCTGCAGGTGGACACAGCATCATCTGTTAAAGTTGTGAAGAA
TGGACAGGCAGTGGCAGGAGTGGGTGATGGGGAGTATGTTGTGGGAGTGG
GAAAAGGTGTAGTCAGAGCAGCACCAGAGGGGGAAGGGCTGACGATGAAG
GGCGCTGAGAGTGAGCAGCAGAGTGTTTATGTTGATGATGGTGAGGAGGA
GGATGACGAGGATGACGAGGAGGAAGAGGAAGAAGAGGAGGAGGCGATAA
AGGTTTTTTCTCCGGCTTTGGCTAAAGGTGTTTGGTGA
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