mRNA_C-tenellus_contig11308.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11308.2.1
Unique NamemRNA_C-tenellus_contig11308.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A1Y1UW59_9FUNG (L domain-like protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1UW59_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 5.970e-18
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   16 SLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMCSSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSG 270
            SL+G+  L  LMELY GNN I     +  L+ L + IILD +GN +CS  ++RLF++Y LSKLKVLDG+A   +E++++R  Y G
Sbjct:  926 SLKGIKKLTSLMELYLGNNYISETSNIFFLKDLQKFIILDLTGNSICSIQNYRLFIIYHLSKLKVLDGIACTLKEYSDSREIYLG 1010
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A2C9K8G1_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K8G1_BIOGL)

HSP 1 Score: 83.2 bits (204), Expect = 1.820e-16
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   13 HSLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMCSS-PHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            +SL G+     L ELY GNN I +  EV LL+PL+ L+ILD  GNPM +S  ++RLFV+Y L  LK LDG A++ QE T A+  + G+++
Sbjct:  626 NSLAGLQRCTALTELYIGNNNISNIREVFLLKPLTNLVILDMYGNPMVTSVENYRLFVIYHLRSLKALDGSAIEVQEGTLAKDTFGGRLT 715
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A815HY51_9BILA (Protein phosphatase 1 regulatory subunit 7 (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815HY51_9BILA)

HSP 1 Score: 81.6 bits (200), Expect = 6.380e-16
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   13 HSLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMC-SSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            HSL  +SG + L+ELY+GNN I +  ++  L+ LS L+ILD  GNP+C  +  +RLF++Y L  L+  DG AV+ QE  EAR  + GK++
Sbjct:  640 HSLAKLSGCLTLIELYAGNNLIKNIRDIFHLKTLSNLLILDLWGNPICHEADKYRLFIIYHLKTLRAFDGFAVEIQESGEAREAFGGKLT 729
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A818PCE1_9BILA (Protein phosphatase 1 regulatory subunit 7 n=8 Tax=Adineta steineri TaxID=433720 RepID=A0A818PCE1_9BILA)

HSP 1 Score: 81.6 bits (200), Expect = 6.400e-16
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   13 HSLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMC-SSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            HSL  +SG + L+ELY+GNN I +  ++  L+ LS L+ILD  GNP+C  +  +RLF++Y L  L+  DG AV+ QE  EAR  + GK++
Sbjct:  983 HSLAKLSGCLTLIELYAGNNLIKNIRDIFHLKTLSNLLILDLWGNPICHEADKYRLFIIYHLKTLRAFDGFAVEIQESGEAREAFGGKLT 1072
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A821JVQ4_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821JVQ4_9BILA)

HSP 1 Score: 75.9 bits (185), Expect = 9.080e-16
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   46 LMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMC-SSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            L+ELY+GNN I +  ++  L+PLS L+ILD  GNP+C  +  +RLF++Y L  L+  DG AV+ QE  EAR  + GK++
Sbjct:    1 LIELYAGNNLIKNIRDIFHLKPLSNLLILDLWGNPICHEAEKYRLFIIYHLKALRAFDGYAVEIQESGEARETFGGKLT 79
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A813S9Q9_ADIRI (Protein phosphatase 1 regulatory subunit 7 n=4 Tax=Adineta ricciae TaxID=249248 RepID=A0A813S9Q9_ADIRI)

HSP 1 Score: 79.7 bits (195), Expect = 3.030e-15
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   13 HSLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMC-SSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            HSL  ++G   L+ELY+GNN I +  ++  L+ LS L+ILD  GNP+C  +  +RLF++Y L  L+  DG AV+ QE  EAR  + GK++
Sbjct: 1010 HSLAKLNGCSTLIELYAGNNLIKNIRDIFHLKSLSNLLILDLWGNPICHEADKYRLFIIYHLKSLRAFDGFAVEIQESGEARETFGGKLT 1099
[Close]
BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A817HQG7_9BILA (Protein phosphatase 1 regulatory subunit 7 n=29 Tax=Rotaria TaxID=231623 RepID=A0A817HQG7_9BILA)

HSP 1 Score: 79.0 bits (193), Expect = 5.610e-15
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   13 HSLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMC-SSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            HSL  +   + L+ELY+GNN I +  ++  L+PLS L+ILD  GNP+C  +  +RLF++Y L  L+  DG AV+ QE  EAR  + GK++
Sbjct:  888 HSLIKLGRSLTLIELYAGNNLIKNIRDIFHLKPLSNLLILDLWGNPICHEAEKYRLFIIYHLKALRAFDGYAVEIQESGEARETFGGKLT 977
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: D7FPT3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT3_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.390e-14
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   94 VELLRPLSQLIILDTSGNPMCSSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            ++ LR L +LIILDTSGNP+CSSPHFRL V++K+  LKVLDGV V   E  EA+ K+ GK++
Sbjct:    1 MDRLRSLPRLIILDTSGNPVCSSPHFRLQVLFKIPTLKVLDGVGVGGTEKNEAKLKFIGKLT 62
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BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: UPI000A1C5147 (leucine-rich repeat-containing protein 9-like n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C5147)

HSP 1 Score: 75.9 bits (185), Expect = 6.810e-14
Identity = 36/88 (40.91%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   19 LQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMCSS-PHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            L G+  +  L+ELY GNN I + L++  L+ L+ LIILD  GNP+     ++R++VV+++S LK LDG+AV+  E   A+  +SG+++
Sbjct:  995 LHGIQRVRSLLELYIGNNHISTTLDIFYLKGLTNLIILDLHGNPLVEKLENYRIYVVFQISSLKALDGIAVEETECKNAKGMFSGRLT 1082
[Close]
BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Match: A0A818CUJ7_9BILA (Protein phosphatase 1 regulatory subunit 7 n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818CUJ7_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 1.210e-13
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   13 HSLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNPMC-SSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVS 279
            HSL  +     L+ELY+GNN I +  ++  L+ LS L+ILD  GNP+C  +  +RLF++Y L  L+  DG AV+ QE  EAR  + GK++
Sbjct:  212 HSLIKLGRCSTLIELYAGNNLIKNIRDIFHLKTLSNLLILDLWGNPICHEAEKYRLFIIYHLKALRAFDGFAVEIQESGEARETFGGKLT 301
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11308.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1UW59_9FUNG5.970e-1848.24L domain-like protein n=1 Tax=Piromyces finnis Tax... [more]
A0A2C9K8G1_BIOGL1.820e-1647.78Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A815HY51_9BILA6.380e-1645.56Protein phosphatase 1 regulatory subunit 7 (Fragme... [more]
A0A818PCE1_9BILA6.400e-1645.56Protein phosphatase 1 regulatory subunit 7 n=8 Tax... [more]
A0A821JVQ4_9BILA9.080e-1646.84Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A813S9Q9_ADIRI3.030e-1544.44Protein phosphatase 1 regulatory subunit 7 n=4 Tax... [more]
A0A817HQG7_9BILA5.610e-1544.44Protein phosphatase 1 regulatory subunit 7 n=29 Ta... [more]
D7FPT3_ECTSI2.390e-1459.68Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
UPI000A1C51476.810e-1440.91leucine-rich repeat-containing protein 9-like n=1 ... [more]
A0A818CUJ7_9BILA1.210e-1343.33Protein phosphatase 1 regulatory subunit 7 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11308contigC-tenellus_contig11308:864..2079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S59_365V6.1
PFAMsLRR_4,LRR_8,LRR_9
Model size303
Max annot lvl33090|Viridiplantae
KEGG koko:K17550
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.82e-18
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota,37S01@33090|Viridiplantae,3GN4A@35493|Streptophyta
DescriptionLeucine Rich repeats (2 copies)
Cds size303
COG categoryT
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.7686682-CDS-C-tenellus_contig11308:863..9591680789172.7686682-CDS-C-tenellus_contig11308:863..959Choristocarpus tenellus KU2346CDSC-tenellus_contig11308 864..959 -
1680789172.7780337-CDS-C-tenellus_contig11308:1537..16511680789172.7780337-CDS-C-tenellus_contig11308:1537..1651Choristocarpus tenellus KU2346CDSC-tenellus_contig11308 1538..1651 -
1680789172.7909126-CDS-C-tenellus_contig11308:1986..20791680789172.7909126-CDS-C-tenellus_contig11308:1986..2079Choristocarpus tenellus KU2346CDSC-tenellus_contig11308 1987..2079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11308.2.1prot_C-tenellus_contig11308.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11308 864..2079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11308.2.1

>prot_C-tenellus_contig11308.2.1 ID=prot_C-tenellus_contig11308.2.1|Name=mRNA_C-tenellus_contig11308.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=101bp
MYLAHSLQGVSGLVQLMELYSGNNEIGSALEVELLRPLSQLIILDTSGNP
MCSSPHFRLFVVYKLSKLKVLDGVAVQWQEHTEARSKYSGKVSHINKIFM
*
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mRNA from alignment at C-tenellus_contig11308:864..2079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11308.2.1 ID=mRNA_C-tenellus_contig11308.2.1|Name=mRNA_C-tenellus_contig11308.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1216bp|location=Sequence derived from alignment at C-tenellus_contig11308:864..2079- (Choristocarpus tenellus KU2346)
ATGTACCTTGCACATAGCCTGCAGGGAGTGAGTGGCTTGGTACAGTTGAT
GGAGCTGTACTCTGGCAACAACGAGATAGGGTCTGCCTTGGAGGTGAGGT
AGTAGGGCATTGAGCAGGCAATGGTGACCAAGAACACTCCAGTCAGGTGT
AGTAGAAGGACAATTGTGCTTGAAGTGTCCACTAAAGATGCCACAATTCT
TTGCAAGTTCATCTAGCATATCTCTGCTGCATGAGTATGTTCAAATGTTT
AGTGTAGGGATTGAAATGACGAATGTACCCCAGATATAGCATCACACTAG
AGTCTACTGTAAGAGTATTGATATCTTTACCATAGAATAAATAGCGGGTT
TATCACATGTTGAACCCACAACTGGTGCATTAAACAGATCTAACACACAT
CCTCTCATCGTTATTCTTGTCGTACTAGGTGGAGTTGCTCAGGCCCCTCT
CCCAACTCATCATCCTTGACACCTCTGGCAATCCCATGTGCTCCTCCCCT
CACTTCAGGCTATTCGTTGTCTACAAACTCTCAAAACTAAAGGTGACATA
ACCTGGAGATGTCCAGTAGGAGGTGGTCCCCTGTGCCCAGCTAATGACCC
AAAATTGCTAGGTCGACCTCTGAACGTTAGATACTTCGGAGTGAAAGTAT
CTTAGAGGGTACGAGTTTTGCCCTGTTTGTCCATTTGGGACTTGACTTCC
CACAGGTGTTTTATGACTTTTTCCTACTCCGATATGTTTAGGAGTAGGAA
AAATTTGCACATTATGAAGAGGTGTGTCCGGAACAAGGATATTGACACTT
CCTCAAAAACATGATAGCCAAATTTACATCAAAATCGGAATATTGGAATT
TGACCCCGAAATGGACGCGGTTCTACCCTCTAAGATTCTTTGGCTCTTCG
AAGTCCACCATGGTACAATCAAACGTTTTGAAATAGCACTCAATCATGAC
ATGGATACAGATAATTCAGCCTTGATAGTACTCAGCTCCTTCCAAATATG
TCTAACCTTGTGACATACTTTCCAAGCCAGGCATCAACCTCCATGCCCCT
CTAATCTCCATGCCAGTCCTTGTCTCCTTTACTACTTACCTGTGCACCAT
CGGTGTTATATGATGTGCAGGTGCTGGATGGGGTTGCAGTCCAATGGCAG
GAACATACAGAGGCCAGGTCCAAGTACAGTGGAAAGGTATCTCATATCAA
TAAGATATTTATGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig11308:864..2079-

>mRNA_C-tenellus_contig11308.2.1 ID=mRNA_C-tenellus_contig11308.2.1|Name=mRNA_C-tenellus_contig11308.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=303bp|location=Sequence derived from alignment at C-tenellus_contig11308:864..2079- (Choristocarpus tenellus KU2346)
ATGTACCTTGCACATAGCCTGCAGGGAGTGAGTGGCTTGGTACAGTTGAT
GGAGCTGTACTCTGGCAACAACGAGATAGGGTCTGCCTTGGAGGTGGAGT
TGCTCAGGCCCCTCTCCCAACTCATCATCCTTGACACCTCTGGCAATCCC
ATGTGCTCCTCCCCTCACTTCAGGCTATTCGTTGTCTACAAACTCTCAAA
ACTAAAGGTGCTGGATGGGGTTGCAGTCCAATGGCAGGAACATACAGAGG
CCAGGTCCAAGTACAGTGGAAAGGTATCTCATATCAATAAGATATTTATG
TAA
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