mRNA_C-tenellus_contig11295.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11295.1.2
Unique NamemRNA_C-tenellus_contig11295.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11295.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11295contigC-tenellus_contig11295:3..4599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3034
Hectar predicted targeting categoryother localisation
Exons4
Cds size2823
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.2285397-CDS-C-tenellus_contig11295:2..14201680789172.2285397-CDS-C-tenellus_contig11295:2..1420Choristocarpus tenellus KU2346CDSC-tenellus_contig11295 3..1420 -
1680789172.238079-CDS-C-tenellus_contig11295:1832..29691680789172.238079-CDS-C-tenellus_contig11295:1832..2969Choristocarpus tenellus KU2346CDSC-tenellus_contig11295 1833..2969 -
1680789172.246439-CDS-C-tenellus_contig11295:3518..36701680789172.246439-CDS-C-tenellus_contig11295:3518..3670Choristocarpus tenellus KU2346CDSC-tenellus_contig11295 3519..3670 -
1680789172.258271-CDS-C-tenellus_contig11295:4273..43891680789172.258271-CDS-C-tenellus_contig11295:4273..4389Choristocarpus tenellus KU2346CDSC-tenellus_contig11295 4274..4389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.2674026-UTR-C-tenellus_contig11295:4389..45991680789172.2674026-UTR-C-tenellus_contig11295:4389..4599Choristocarpus tenellus KU2346UTRC-tenellus_contig11295 4390..4599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11295.1.2prot_C-tenellus_contig11295.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11295 3..4389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11295.1.2

>prot_C-tenellus_contig11295.1.2 ID=prot_C-tenellus_contig11295.1.2|Name=mRNA_C-tenellus_contig11295.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=941bp
MSLRSRRREDPVRNGNVMSATATNRGMAGNATSSQQRPSRPTQRWRSRFR
DRSVSTSLSSMSAWSSSSPRSSSGSNSVGTANSPPSTHQDVGEDSHVEES
SAVAPIAPPSTTLMAPMATVGATISPPSTPQMVSVSSLVKPGLRNGGRVR
DTMGMSQGPGRDRGTAVRALHPHQLSTTTSATGTVGSSRSMPPQQAGPTA
GGVTGRGEGGGATNTAGAVAGVVGSDVSSEGGGSRPSSMRLRRSLSFTTS
LSQFADTAARVAAAVTPGRSRGHKEILEKGESAATSGGPKYSEGDTPQAE
TKLQGPVGGEGGGGGEDEHVGQGMSSRSMLPLERAMGVLNGQSAGERGKG
DHSQKGEGNMDKSQVRRRRNRDSSSRGGGEVQGVLDGDVSTSPGGFKTSV
RGALKKTSSSSSNPAKKSSKDSKALGTGKPMVTSMAGQHGGAESTASSLG
TRDRSGSAISGRSKIPTADQSSRSLVRKGSSAGALLPASVLGHMPIVTKV
ETPPTQQSLESDCSNGNGGKIRGNGGGDNNRSAVSPSKTAASTGGLPARA
RSFRHRFPIRTRQQSISSSPLTQIDQRTPTKMGATKPVVMTGEAGKDPAV
QTDSGASVCIRRSFSAEVKSYNGNSEATATGNNHRLHNRVQDGSGGGSGS
AIKREHGKSWSSRGPSGYSNVDKVVVKGSLKGSGSGNGSGSGSRWPSISG
PPGKPGVRNGDEVEVGVGVNQTSAGGALSGTNVSKVSSRVRRAGGKRAPP
VHLSPRQLQGNDLSSVSDKGEATVLPSKSKDRSLAAVGVTPGSISTEEQK
SGTLVQGSNVKRTANIGRTRASQARADGLQQASPSGMLPPRNQQDCSLSS
LPQSSLERNFSSPTARSSASFTPSVQGKKEDKQRSTLLSGVKGTPTPSTA
APPRGSPRDVKMTNKARSATGVGELSKTTESGSEHKEAGDK
back to top

mRNA from alignment at C-tenellus_contig11295:3..4599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11295.1.2 ID=mRNA_C-tenellus_contig11295.1.2|Name=mRNA_C-tenellus_contig11295.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4597bp|location=Sequence derived from alignment at C-tenellus_contig11295:3..4599- (Choristocarpus tenellus KU2346)
CGGGGTCACTCTCACCTCTTGTGTTCCAACAGGTCTTCTTTTTATATTAG
AGTGATTTGGGATTTGGGAGACATTGGTGGGTACTTGGTATACCGTACAT
ACCAGACATATAGTGTCAACAACTTTCTGTTCCATCTCTGACCAAAAAGG
AGGAGGGGAGGGTGCACTACCCCCCTTTGTCCGTCAAAGGTGGGGTTGTC
GCTCTAGGTGATGTCATTGCGGAGTCGACGAAGAGAGGATCCTGTGCGAA
ATGGGAACGTGATGTCAGCTACTGCGACCAACAGAGGGATGGCAGGGAAT
GCGACATCTTCGCAGCAGCGCCCCAGGTGCGCATGGGAGAGACTCACGAT
CCACTATGAGTTGGAGAGGGGTTTGGCCTATGGCCATACGATATTCTAAC
CCATTTAACGAACATCTAGCGTCACTACACAACTCCCATTCCTGTTTGAG
ATCACACGTGACTACTGAGTGTTTGCATGGAAGGAAGGAAATAGAGGGAA
TGATGGGCAGTGTACAGAATTTCAAGGAGAGATTTTAAGACTTGGGACAA
AACCTGAGAGGGCCTCGGTCTGAATTTATGTTTATGTTTCCTGGTACAAA
TTTGTTTTTTTCCTTTCCTACCTGATTCTGGTCACTGATCGTACTGTCCT
CCGCGTGTATGTGCATGCTGTGTCGAGTGCCTGCCCACTTAATCCCTCTT
ACACATCTTCTTCTCTTTCTATTGGAGACACTACGGTATGGTGGATAAGA
CATGAAGAGGTTGTCAGAGAGCAAATTACGCCTTCTTGATACACCATCAC
AATTCAGGACATACGTCTGTAAACACTCTTGCTGATGCGACTGCCTTTAC
TCGCAACCCAAAACGTTTATGGTCGCTTCCAATTTTTTCTGACATTAGGC
CCGATTCCACTCCTCTCGTGCTCTACCAGTCGACCTACCCAACGCTGGCG
CAGTCGGTTCAGAGACCGCTCAGTCTCCACCTCCTTGTCGAGCATGTCAG
CCTGGTCTAGTTCAAGCCCTCGTTCATCCTCAGGGTCTAACTCGGTTGGA
ACCGCCAACTCCCCTCCCTCTACCCATCAAGGTAGCGTTCTGAGTCACTG
ATCGTGACGCCTTCTACTCTTCCCTCGCCACCCTCTTAAGATTTCTATCC
TCATTGTCTATTTCCTACTACAGTACACAGGATGATTATAGACGCTTTTA
TGTTCTGCTTTTCGTTGGTAGGGAGTGGACTCCGGGGTAATATCCTTTTG
CAATCTTTTGTGAAAAGCGTGGATTGAAAGAGGTCTTCCTGTTCCATCCC
TACTGTGTTCGTGACTTGAGTGTTGGAGAGGAAAGTGACTGGAACAGGGT
GTATTCGGTTGGGAGGATGAAGGAATGGAGATGGTGACATATGTGAACAA
TATGGTATATATGTTGTATGTATGTATCTATATTCTACAACTGCAGATGC
GATGCATGTTATGGAAAGAGGGTAATGCGTAACATACAGCGATTCAACCC
GAAAAGGGTGGGAAACCCTTGTTCTCAAGTTTTGTCGAGGTTCTTAGTCA
GGTGTGGGTCACGCTCTCCGACCACTCCCCAAACCCTCTTAGCCCAACAT
AACTTGATCCCTGCCCATGCACTGACTCAGATGTAGGTGAGGATTCTCAT
GTAGAGGAATCTAGTGCAGTGGCCCCCATAGCACCTCCAAGCACTACATT
GATGGCGCCAATGGCCACTGTTGGTGCAACTATCAGCCCCCCAAGTACTC
CCCAGATGGTCTCTGTCTCTTCTCTGGTGAAACCAGGGCTCCGGAATGGA
GGTCGAGTAAGAGATACAATGGGTATGTCTCAGGGCCCGGGGAGGGACAG
AGGGACTGCAGTGCGGGCTCTACATCCACACCAGCTGTCGACCACAACAT
CAGCAACGGGTACTGTAGGATCATCTAGGTCGATGCCACCTCAGCAGGCA
GGGCCCACAGCCGGAGGAGTGACTGGAAGAGGCGAGGGAGGAGGTGCGAC
AAATACAGCAGGAGCAGTGGCAGGAGTAGTGGGGTCTGATGTGTCTTCTG
AAGGTGGTGGAAGCAGACCAAGCTCAATGCGTCTGCGCCGTTCACTATCA
TTCACAACTAGTCTGTCACAGTTTGCTGATACAGCGGCGAGGGTGGCTGC
TGCAGTCACCCCGGGCCGAAGTCGGGGTCACAAAGAAATTTTAGAGAAGG
GTGAGTCTGCTGCTACTTCGGGGGGTCCTAAGTATTCGGAAGGGGATACA
CCTCAAGCAGAGACTAAGTTGCAGGGGCCAGTAGGTGGTGAGGGTGGAGG
TGGGGGTGAAGATGAACATGTGGGGCAAGGTATGTCATCCCGGTCAATGT
TGCCCTTGGAACGTGCAATGGGTGTATTAAATGGTCAGTCTGCAGGTGAA
AGGGGGAAAGGTGACCACAGCCAGAAAGGAGAGGGGAACATGGACAAAAG
TCAAGTTAGGCGCAGAAGGAACAGGGATAGCAGCAGCAGGGGAGGAGGAG
AGGTACAGGGAGTTCTAGATGGAGATGTTTCTACTTCTCCTGGTGGGTTC
AAAACCAGTGTCCGTGGGGCATTGAAAAAGACAAGCTCGAGCTCCAGTAA
TCCTGCAAAAAAATCTTCGAAAGACTCCAAGGCACTGGGGACAGGGAAAC
CCATGGTTACAAGCATGGCTGGTCAGCATGGTGGGGCTGAGAGTACAGCA
TCTTCTTTGGGGACAAGGGATCGAAGTGGAAGTGCCATCTCTGGTAGGAG
CAAGATTCCAACCGCTGGTAAGTTGTGTAAGGCGTTCATTGAACAAGTTC
TAGCATGTGGCTATTGAGTGGACCTGGATCTCCCTATTCTTGCACCATCG
TAGTGGTACTTTGCAGTTGGTGCTTTTGATATGAGATGAAACGATATTCA
TGATGTTGTTTGTATCAGGAGAAAAGGCTGTTATTATTCTGTGATGAAAT
GAATGACAAAGGTAGTTTTATTTAGTCCTTGCTTCACAGAGTGTCAAAAT
TGTTGTAGTTTCCATGGTTTTGGTTTTCATCATTTGCGGGGGATGCCCTC
TCTCCAGGGGAGAGTCATGTAGTAGGCAGATGACCCCCCCCCCCCCTCCC
TTCCCTTGTGTTCAAGATCTGAACTTACGTGTTTCCCTCTCCCCTCTATC
CCTCCAATCTTGGATACACACACACCCAGACCAGTCTTCACGATCCTTAG
TTAGGAAGGGCTCCTCAGCAGGTGCTCTCCTGCCAGCGAGTGTGCTTGGA
CACATGCCAATAGTGACCAAAGTTGAAACCCCCCCGACCCAGCAGAGTTT
AGAGAGTGACTGCAGCAATGGGAATGGAGGAAAGATTAGAGGAAATGGTG
GTGGTGACAACAATAGGAGCGCTGTGAGCCCCAGTAAAACTGCAGCTTCG
ACCGGCGGCCTACCTGCTCGTGCTAGAAGTTTCCGTCATCGATTCCCAAT
CCGCACAAGACAACAATCCATCTCGAGCAGCCCATTGACTCAGATAGACC
AGCGTACTCCGACAAAAATGGGCGCGACTAAACCAGTGGTAATGACTGGG
GAGGCTGGGAAAGATCCAGCTGTTCAGACAGACAGTGGGGCAAGTGTATG
CATCAGGCGTTCATTCAGTGCTGAAGTGAAGTCTTACAACGGAAACAGCG
AGGCGACAGCTACTGGCAACAATCACAGGCTTCACAATAGGGTACAGGAT
GGCAGTGGCGGTGGTAGTGGGTCAGCAATCAAGAGAGAGCATGGAAAGTC
TTGGTCAAGTCGGGGGCCTAGTGGGTATTCTAATGTAGATAAGGTTGTTG
TCAAGGGCAGCCTCAAAGGCAGCGGCAGTGGCAATGGCAGTGGCAGTGGC
AGTCGATGGCCGTCTATTTCTGGACCTCCTGGGAAGCCGGGAGTTAGGAA
TGGGGATGAGGTTGAGGTAGGAGTAGGGGTCAACCAAACATCTGCTGGGG
GGGCATTGAGTGGGACAAATGTTTCTAAGGTGTCCTCTCGTGTGAGGCGG
GCAGGAGGTAAAAGAGCCCCACCAGTTCATTTGTCTCCAAGACAGTTGCA
AGGCAATGACTTGTCTTCTGTTTCTGACAAGGGTGAAGCAACTGTGTTGC
CATCAAAGTCCAAGGATAGATCCTTGGCAGCAGTGGGGGTGACTCCAGGG
TCTATATCTACTGAAGAACAGAAGTCAGGGACACTGGTTCAAGGATCAAA
TGTTAAGAGAACTGCTAATATTGGAAGGACCAGGGCATCACAGGCCAGGG
CGGATGGACTCCAGCAAGCATCACCCTCTGGAATGCTTCCACCAAGGAAT
CAGCAGGACTGTTCCCTATCTTCCCTTCCTCAGTCATCCTTAGAGCGCAA
TTTTTCGTCACCCACAGCTCGGAGTTCTGCCTCTTTTACTCCCTCAGTAC
AGGGGAAAAAAGAGGACAAGCAGAGGTCAACATTACTGTCTGGAGTGAAG
GGGACGCCTACACCTTCCACTGCTGCGCCACCTAGAGGCTCACCTAGAGA
TGTCAAGATGACGAACAAGGCACGAAGTGCAACGGGAGTGGGAGAACTGT
CCAAGACAACAGAGAGTGGTTCTGAACACAAAGAGGCTGGAGATAAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11295:3..4599-

>mRNA_C-tenellus_contig11295.1.2 ID=mRNA_C-tenellus_contig11295.1.2|Name=mRNA_C-tenellus_contig11295.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=2823bp|location=Sequence derived from alignment at C-tenellus_contig11295:3..4599- (Choristocarpus tenellus KU2346)
ATGTCATTGCGGAGTCGACGAAGAGAGGATCCTGTGCGAAATGGGAACGT
GATGTCAGCTACTGCGACCAACAGAGGGATGGCAGGGAATGCGACATCTT
CGCAGCAGCGCCCCAGTCGACCTACCCAACGCTGGCGCAGTCGGTTCAGA
GACCGCTCAGTCTCCACCTCCTTGTCGAGCATGTCAGCCTGGTCTAGTTC
AAGCCCTCGTTCATCCTCAGGGTCTAACTCGGTTGGAACCGCCAACTCCC
CTCCCTCTACCCATCAAGATGTAGGTGAGGATTCTCATGTAGAGGAATCT
AGTGCAGTGGCCCCCATAGCACCTCCAAGCACTACATTGATGGCGCCAAT
GGCCACTGTTGGTGCAACTATCAGCCCCCCAAGTACTCCCCAGATGGTCT
CTGTCTCTTCTCTGGTGAAACCAGGGCTCCGGAATGGAGGTCGAGTAAGA
GATACAATGGGTATGTCTCAGGGCCCGGGGAGGGACAGAGGGACTGCAGT
GCGGGCTCTACATCCACACCAGCTGTCGACCACAACATCAGCAACGGGTA
CTGTAGGATCATCTAGGTCGATGCCACCTCAGCAGGCAGGGCCCACAGCC
GGAGGAGTGACTGGAAGAGGCGAGGGAGGAGGTGCGACAAATACAGCAGG
AGCAGTGGCAGGAGTAGTGGGGTCTGATGTGTCTTCTGAAGGTGGTGGAA
GCAGACCAAGCTCAATGCGTCTGCGCCGTTCACTATCATTCACAACTAGT
CTGTCACAGTTTGCTGATACAGCGGCGAGGGTGGCTGCTGCAGTCACCCC
GGGCCGAAGTCGGGGTCACAAAGAAATTTTAGAGAAGGGTGAGTCTGCTG
CTACTTCGGGGGGTCCTAAGTATTCGGAAGGGGATACACCTCAAGCAGAG
ACTAAGTTGCAGGGGCCAGTAGGTGGTGAGGGTGGAGGTGGGGGTGAAGA
TGAACATGTGGGGCAAGGTATGTCATCCCGGTCAATGTTGCCCTTGGAAC
GTGCAATGGGTGTATTAAATGGTCAGTCTGCAGGTGAAAGGGGGAAAGGT
GACCACAGCCAGAAAGGAGAGGGGAACATGGACAAAAGTCAAGTTAGGCG
CAGAAGGAACAGGGATAGCAGCAGCAGGGGAGGAGGAGAGGTACAGGGAG
TTCTAGATGGAGATGTTTCTACTTCTCCTGGTGGGTTCAAAACCAGTGTC
CGTGGGGCATTGAAAAAGACAAGCTCGAGCTCCAGTAATCCTGCAAAAAA
ATCTTCGAAAGACTCCAAGGCACTGGGGACAGGGAAACCCATGGTTACAA
GCATGGCTGGTCAGCATGGTGGGGCTGAGAGTACAGCATCTTCTTTGGGG
ACAAGGGATCGAAGTGGAAGTGCCATCTCTGGTAGGAGCAAGATTCCAAC
CGCTGACCAGTCTTCACGATCCTTAGTTAGGAAGGGCTCCTCAGCAGGTG
CTCTCCTGCCAGCGAGTGTGCTTGGACACATGCCAATAGTGACCAAAGTT
GAAACCCCCCCGACCCAGCAGAGTTTAGAGAGTGACTGCAGCAATGGGAA
TGGAGGAAAGATTAGAGGAAATGGTGGTGGTGACAACAATAGGAGCGCTG
TGAGCCCCAGTAAAACTGCAGCTTCGACCGGCGGCCTACCTGCTCGTGCT
AGAAGTTTCCGTCATCGATTCCCAATCCGCACAAGACAACAATCCATCTC
GAGCAGCCCATTGACTCAGATAGACCAGCGTACTCCGACAAAAATGGGCG
CGACTAAACCAGTGGTAATGACTGGGGAGGCTGGGAAAGATCCAGCTGTT
CAGACAGACAGTGGGGCAAGTGTATGCATCAGGCGTTCATTCAGTGCTGA
AGTGAAGTCTTACAACGGAAACAGCGAGGCGACAGCTACTGGCAACAATC
ACAGGCTTCACAATAGGGTACAGGATGGCAGTGGCGGTGGTAGTGGGTCA
GCAATCAAGAGAGAGCATGGAAAGTCTTGGTCAAGTCGGGGGCCTAGTGG
GTATTCTAATGTAGATAAGGTTGTTGTCAAGGGCAGCCTCAAAGGCAGCG
GCAGTGGCAATGGCAGTGGCAGTGGCAGTCGATGGCCGTCTATTTCTGGA
CCTCCTGGGAAGCCGGGAGTTAGGAATGGGGATGAGGTTGAGGTAGGAGT
AGGGGTCAACCAAACATCTGCTGGGGGGGCATTGAGTGGGACAAATGTTT
CTAAGGTGTCCTCTCGTGTGAGGCGGGCAGGAGGTAAAAGAGCCCCACCA
GTTCATTTGTCTCCAAGACAGTTGCAAGGCAATGACTTGTCTTCTGTTTC
TGACAAGGGTGAAGCAACTGTGTTGCCATCAAAGTCCAAGGATAGATCCT
TGGCAGCAGTGGGGGTGACTCCAGGGTCTATATCTACTGAAGAACAGAAG
TCAGGGACACTGGTTCAAGGATCAAATGTTAAGAGAACTGCTAATATTGG
AAGGACCAGGGCATCACAGGCCAGGGCGGATGGACTCCAGCAAGCATCAC
CCTCTGGAATGCTTCCACCAAGGAATCAGCAGGACTGTTCCCTATCTTCC
CTTCCTCAGTCATCCTTAGAGCGCAATTTTTCGTCACCCACAGCTCGGAG
TTCTGCCTCTTTTACTCCCTCAGTACAGGGGAAAAAAGAGGACAAGCAGA
GGTCAACATTACTGTCTGGAGTGAAGGGGACGCCTACACCTTCCACTGCT
GCGCCACCTAGAGGCTCACCTAGAGATGTCAAGATGACGAACAAGGCACG
AAGTGCAACGGGAGTGGGAGAACTGTCCAAGACAACAGAGAGTGGTTCTG
AACACAAAGAGGCTGGAGATAAG
back to top