mRNA_C-tenellus_contig11292.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11292.1.1
Unique NamemRNA_C-tenellus_contig11292.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: D8LTW0_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW0_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 2.440e-78
Identity = 114/147 (77.55%), Postives = 128/147 (87.07%), Query Frame = 1 
Query:    1 YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            YIYE+   I ++ +GGF+ + A FFCGCVVL LQYLH+MSVAYRDLKPENLLL QDGYLK+IDFGFAKRIPFKK + +  KSFTLCGTPDYLAPELVLS+GHDK+VDYWALGCFLYELL GRTPFTD  QAEIFKK +RS+RFL FP
Sbjct:  169 YIYERHTPITKTGLGGFSLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDTTLQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFP 315
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A835YV03_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV03_9STRA)

HSP 1 Score: 249 bits (636), Expect = 5.790e-76
Identity = 118/149 (79.19%), Postives = 132/149 (88.59%), Query Frame = 1 
Query:    1 YIYE--KFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            YIYE  KF  IP +++GGF PA A+F+ G VVL LQYLHKM+VAYRDLKPENLL+AQDGYLK+IDFGFAKRIPFKKG+ +  KSFTLCGTPDYLAPELVLS+GHDKSVDYWALGCF+YELL+GRTPFTD  QAEIFKK +RSDRFL FP
Sbjct:  519 YIYERAKFKLIPHTNLGGFQPATARFYGGSVVLCLQYLHKMNVAYRDLKPENLLVAQDGYLKMIDFGFAKRIPFKKGATMQTKSFTLCGTPDYLAPELVLSRGHDKSVDYWALGCFIYELLLGRTPFTDPRQAEIFKKAIRSDRFLAFP 667
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A835Z7Z1_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z1_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.250e-75
Identity = 118/149 (79.19%), Postives = 130/149 (87.25%), Query Frame = 1 
Query:    1 YIYEK--FNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            YIYEK  F  IP ++MGGF    A+F+ G VVL LQYLHKMSVAYRDLKPENLL+AQDGY+K+IDFGFAKRIPFKKG+ +  KSFTLCGTPDYLAPELVLS+GHDKSVDYWALGCF+YELLVGRTPFTD  QAEIFKK +RSDRFL FP
Sbjct:  467 YIYEKAKFKLIPHTNMGGFQAHTARFYGGSVVLCLQYLHKMSVAYRDLKPENLLVAQDGYIKMIDFGFAKRIPFKKGATLQTKSFTLCGTPDYLAPELVLSRGHDKSVDYWALGCFIYELLVGRTPFTDPRQAEIFKKAIRSDRFLSFP 615
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A6H5JZB9_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB9_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 2.710e-74
Identity = 114/147 (77.55%), Postives = 128/147 (87.07%), Query Frame = 1 
Query:    1 YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            YIYE+   I ++ +GGF+ + A FFCGCVVL LQYLH+MSVAYRDLKPENLLL QDGYLK+IDFGFAKRIPFKK + +  KSFTLCGTPDYLAPELVLS+GHDK+VDYWALGCFLYELL GRTPFTD  QAEIFKK +RS+RFL FP
Sbjct:  736 YIYERHTPITKTGLGGFSLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSERFLAFP 882
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A7S2R9B3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9B3_9STRA)

HSP 1 Score: 220 bits (561), Expect = 1.110e-69
Identity = 96/149 (64.43%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:    1 YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFPNR 447
            YIYEK + IPRSS+GGF    +QF+C CVV +  ++H + VAYRDLKPENLL+   GY+K+IDFGFAK IPF+K   IH+KSFTLCGTP+YL+PELVLSKGHDKS DYWALGC LYELLVG TPF + +  E+FK++++S ++L+FP+R
Sbjct:   44 YIYEKTDVIPRSSLGGFVEPVSQFYCSCVVSAFSHIHGLGVAYRDLKPENLLMDATGYIKVIDFGFAKHIPFEKRGKIHHKSFTLCGTPEYLSPELVLSKGHDKSADYWALGCLLYELLVGHTPFANDNHQEVFKRILQSTKYLRFPSR 192
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A7S3XNP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNP9_HETAK)

HSP 1 Score: 212 bits (540), Expect = 1.430e-65
Identity = 96/147 (65.31%), Postives = 118/147 (80.27%), Query Frame = 1 
Query:    1 YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            YIY++ + IP +S+GGF  + A+F+  CVVL L+Y+H + VAYRDLKPENLLL   G+LK+IDFGFAK IPFKKG+ I  KSFTLCGTPDYLAPELV SKGHDKSVDYWALGC +YEL+ G+TPF D +Q E+FKK++ S + L  P
Sbjct:  119 YIYDRVHLIPHTSVGGFRVSTARFYAACVVLCLEYVHGLGVAYRDLKPENLLLDNQGFLKMIDFGFAKYIPFKKGNQIQTKSFTLCGTPDYLAPELVRSKGHDKSVDYWALGCLVYELICGQTPFQDNYQPEVFKKIVNSKKSLHIP 265
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A7S2CPB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPB2_9STRA)

HSP 1 Score: 206 bits (523), Expect = 6.310e-63
Identity = 93/147 (63.27%), Postives = 114/147 (77.55%), Query Frame = 1 
Query:    1 YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            YIYEK N I R+++GGF  +AA F+ GCV+ + QY+H   VAYRDLKPENLL+   G+ KIIDFGFAKRIPF K   +  KSFT+CGTP+YL+PEL+ S GHDKSVDYWALGC +YELLVG+TPF D +Q EIF+K+  S + L FP
Sbjct:  123 YIYEKVNLIRRTALGGFVESAAMFYAGCVISAFQYVHDKGVAYRDLKPENLLIDSAGFCKIIDFGFAKRIPFMKDGKVCAKSFTICGTPEYLSPELIQSSGHDKSVDYWALGCLVYELLVGQTPFQDDNQREIFRKITNSKKHLAFP 269
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A4D9D4B2_9STRA (cGMP-dependent protein kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4B2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.020e-62
Identity = 93/147 (63.27%), Postives = 114/147 (77.55%), Query Frame = 1 
Query:    1 YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            YIY++F+++PR++ GGF     QF+  C + +L Y+HK  VAYRDLKPENLLL   GYLKIIDFGFAK +PF+K  N+  K+FTLCGTP+YLAPELVLS+GHDKSVDYWA GC +YEL+VGRTPF D    EIFKK++ S   L FP
Sbjct:  344 YIYDRFDSLPRTNFGGFLKGHTQFYAACALSALDYIHKKDVAYRDLKPENLLLDSQGYLKIIDFGFAKTVPFQKNGNLQLKTFTLCGTPEYLAPELVLSRGHDKSVDYWAFGCLVYELMVGRTPFQDEQHDEIFKKIIHSSTNLTFP 490
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A7S2RAC3_9STRA (cGMP-dependent protein kinase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAC3_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.400e-60
Identity = 92/147 (62.59%), Postives = 115/147 (78.23%), Query Frame = 1 
Query:    1 YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFP 441
            Y+YEK + +PR+ +GGF+   AQF+ GCV+ +  Y+H   VAYRDLKPENLL+  +G+LK+IDFGFAKRIPF K      KSFTLCGTP+YL+PELVLSKGHDKS DYWALGC +YELL+G TPF    Q EIFK++++S R+L FP
Sbjct:  576 YVYEKTHVLPRTKLGGFSVPHAQFYSGCVISAFNYIHGKGVAYRDLKPENLLVTAEGFLKVIDFGFAKRIPFVKNGRTSAKSFTLCGTPEYLSPELVLSKGHDKSADYWALGCLVYELLIGHTPFQHDSQQEIFKRIIQSSRYLHFP 722
[Close]
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Match: A0A7S2G969_9STRA (cGMP-dependent protein kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G969_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.540e-58
Identity = 86/150 (57.33%), Postives = 121/150 (80.67%), Query Frame = 1 
Query:    1 YIYEKFNA-IPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPENLLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSKGHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFPNR 447
            +IYEK +  +PR+ +GGF+ +AA F+ GC++ +  Y+H+M+VAYRDLKPEN+++   GYLK+IDFGFAK IP+KK   IH+ S+T+CGTP+YLAPEL+ SKGHDKSVDYWALGC +YEL+ GRTPF   +Q ++F+ ++ S + LKFP++
Sbjct:  549 FIYEKQDGYVPRNRIGGFSDSAAMFYSGCIISAFHYIHEMNVAYRDLKPENIMIDSSGYLKMIDFGFAKTIPYKKNGEIHSSSYTICGTPEYLAPELIQSKGHDKSVDYWALGCLVYELICGRTPFAHENQRDLFQNILYSRKTLKFPSK 698
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW0_ECTSI2.440e-7877.55cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835YV03_9STRA5.790e-7679.19cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A835Z7Z1_9STRA1.250e-7579.19cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A6H5JZB9_9PHAE2.710e-7477.55cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A7S2R9B3_9STRA1.110e-6964.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XNP9_HETAK1.430e-6565.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CPB2_9STRA6.310e-6363.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D4B2_9STRA3.020e-6263.27cGMP-dependent protein kinase n=1 Tax=Nannochlorop... [more]
A0A7S2RAC3_9STRA2.400e-6062.59cGMP-dependent protein kinase n=2 Tax=Rhizochromul... [more]
A0A7S2G969_9STRA2.540e-5857.33cGMP-dependent protein kinase n=1 Tax=Dictyocha sp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11292contigC-tenellus_contig11292:1160..5134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTW0
PFAMsPkinase,WD40,cNMP_binding
Model size450
Max annot lvl2759|Eukaryota
KEGG koko:K07376,ko:K19477
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04924,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04924,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
Exons2
Evalue4e-79
EggNOG OGsCOG0664@1|root,KOG0614@2759|Eukaryota
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-12_004110.1
EC2.7.11.12
DescriptioncGMP-dependent protein kinase activity
Cds size450
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.1847787-CDS-C-tenellus_contig11292:1159..13391680789172.1847787-CDS-C-tenellus_contig11292:1159..1339Choristocarpus tenellus KU2346CDSC-tenellus_contig11292 1160..1339 +
1680789172.1975887-CDS-C-tenellus_contig11292:4864..51341680789172.1975887-CDS-C-tenellus_contig11292:4864..5134Choristocarpus tenellus KU2346CDSC-tenellus_contig11292 4865..5134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11292.1.1prot_C-tenellus_contig11292.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11292 1160..5134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11292.1.1

>prot_C-tenellus_contig11292.1.1 ID=prot_C-tenellus_contig11292.1.1|Name=mRNA_C-tenellus_contig11292.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=150bp
YIYEKFNAIPRSSMGGFAPAAAQFFCGCVVLSLQYLHKMSVAYRDLKPEN
LLLAQDGYLKIIDFGFAKRIPFKKGSNIHNKSFTLCGTPDYLAPELVLSK
GHDKSVDYWALGCFLYELLVGRTPFTDAHQAEIFKKVMRSDRFLKFPNR*
back to top

mRNA from alignment at C-tenellus_contig11292:1160..5134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11292.1.1 ID=mRNA_C-tenellus_contig11292.1.1|Name=mRNA_C-tenellus_contig11292.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3975bp|location=Sequence derived from alignment at C-tenellus_contig11292:1160..5134+ (Choristocarpus tenellus KU2346)
TACATCTACGAAAAATTCAACGCTATCCCAAGATCATCCATGGGAGGGTT
TGCGCCAGCTGCTGCTCAGTTCTTTTGTGGATGTGTAGTTCTTTCCCTTC
AGTACCTTCACAAGATGAGCGTTGCCTATAGGGACCTCAAGCCCGAAAAC
TTGCTTTTGGCCCAGGATGGCTACCTCAAGGTAAGTGTGTTATGTGTGTG
TGTCTCGTTGTAGTTGTTGTGTGTGTGTGTTATGTGTATGTGTCTCGTTG
TAGTTGTGTGTGTGTTATGTGTATGTGTCTCGTTGTAGTTGTTGTGTGTG
TGTTATGTGTGTGTGTCTCGTTGTAGTTGTGTGACAAGTGTTTATTTGAT
TCTGTTTTATTTGGTGTTATGCTCGAATAGTTAAGTTGATTTTTTACAAG
TGTATCAAGTGAGGGTTTTTCTGATTGAGGGTTTTTGTGTATTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTTTGAATGCCATGAATTATGAGTGGGTGTT
TTTTTTTTAGTGTTGATCAAATTTGTTAGCCAATTGAATTCACTGCTTTC
TTTTTCTATTTTTTTTGTTTTCAACATCATTTTTTTTTTTAGAGATGAAT
TCCATCGGGGTGTAACACATTTGTGAGATTTTATTGTTTATTGTTATTTT
TTATCTCAATTGAGAAACGAACGAAACAAAAAGGACCAAGTTAGTGCCGG
CTTAACGGTAGGTTTTTGTGGATGTTGGTTGTGAGTTCACTGCCTGATGT
GGAGTGGAGGTTTGCGCACTTTACAGGCGTGTTTATCTTCTTTTTTTTCT
CACTATTGCTTCAGTGTAGTTTGTTTCTTGCTGATGGTACTCCTTCAAAC
AGGATCTTTCAAACAGGATCTGACCCTTGTGGCACTGGCTCATTCATAGA
TGTCTCTTTAGTCTCTTTTGGCTCTTGAATAGTGGAGACTTGGATAGATT
CCCGCATTGGCGATTGGATTGGTCAAGGCGTGCCTTTTTTTCAGGGTGTA
GGTGTTGATTTTCTTGTTGAATCTTTTTCAACACACCTATAGGGTCTCCC
TATGCTCTAGTAGAGAGAGGGCAGTTCTTGAGTTTTTTTTTGTGTGTGTA
AACTAAAGGACCTTTCTCCTTTCCGTGATTGGTCAATCCGCATACGACTC
CTTCACGCTGATTGGACTTTTTTAGTGGTCGTAGAGAGGGTCAACAAGGC
ACAAGGGTGGTGCCTAGGAGATTTAAATAGCACCTGCAATCTCTAGACTG
CTCTTCCTATGCCAAGAAAAACCTTGTAGACTATGGTATCCAGGAGATGG
AAAGTCCGATGTCACCTTCCACTCACCACAAACCCCTCATTTCATTCTTG
ATCATCCCATTCCATCAGATCATCTTTCAGTTTAGATGGGAGGAGGGGGG
GATAGAAGCCCGTTGGGGTAAGATACTAAAAAGAAAGATCCTAGTCGTGC
CTTGATTCAACTATCACTGTTGATAGTTGAGGAACCTCTTTCAAGAGTGA
GGCCATGTGGAGGGCGAGCTTTAACTGGTTCAGTTTGTCCACCTCTCTTT
CTCTCTCTCTCTATTAGACATGACCTGGAGTCAGGCTGGATTGGGTTGAG
GATTTGATGAGGGATCTTGTGACAAGGTGGCAGGTATTAATGGTAGATGA
TGAGTGGCGAGTCCATGGTCTGGACCAGGTTCAATAAATTTTTGGAACCT
GTCCAGTCTGCAGGCTCAAATATTTTCTTGGCATGTTGACACCAGAGCCT
TGAGAGATTATCAGTGACCAGATCGTTGTACAGTCAAGGTTAATGGCTGA
TGGTACAAAGTTGACCTGGTTTGGTTCTTATTTGTTCATCGTAGTGATTG
AGAGTGGGCGACTGAAGGTGGGTGACTGAAGGTACGTCAAATATATATAC
ATATATAGATATTTCCACATGCATCTTGGGACACATTTTGACTTGATGTG
TTTGTGGTCATCAACTACTCTAACATGGCTAGGGCACAGGTTGGTTTGGT
GTAACATGTTCTGATAGGACTGGTCCATGACCATGGAGTGTTTTAGAATG
ACTGGGCAACCAACAGGCTGGCCCAGTACCAGCATGTTCTGACAGAGGTA
AAGTACATATTCCATCAAGTGTTTCAACATATCCGTACAATGGGATCAGT
GAGTCATGGCCATGCTAAGTGCATGGACCAATGGAAAATAGAAAGTGCAC
ATGTTTAAGTCTAAAATGAGTATTGCCTATTTTGAGGTGAAGAGGTCGTA
CATCTTGCTGTGATGTAATTTAGGCCACACCAACGACCACATTTACATTC
CTACCCAGTCAGCCACCAGTCAGCCAGGCATATATCCTTCTTTTTTTTCT
TTTTTTCTTTTTTGGGGGGGGGGGTTCTATAGTTGTGTCTTCGGAAAAAA
CATGTGCAAAAAAGAACGAGAACTCCAGTGGTGCTCCATCCCTAACCTTA
AGAAGTGGTTGTGCGATTTTTCAAAAAAAATTCTTGCCTCGCACATTGTA
CGTTCTGTAATTTTGTAATTTTGATGTGTTGGAACCCGAGGCGTTGTTTG
CGTTGTGTTCTGTGTTCTGTGTTCTGGTCCGTTGGAACACTTACGGCATG
TATAAGTGTAGACATTCCTTCAAGTACACGTTTTGTGTTGGAAGACTGCG
CTGTTTGAAATCAGGAGAAGCACAAATTTGATGCGCAGTACTTTTCTTTT
CTTTTTTGTGCTATGCTTAAGGGGTGCAGGTCATCGTCCCCCGGCCCCGG
CCCCTCCGATGTGAGAGGAGGGGTCCAAGCCCCCAAGATATATGAGTGGG
TATTGCTAGTCGCAGAGCAGTAAACACCTGTAACTGTGATTGTGGTACCG
ACCTTGCTCTCTAACCTGCCTGTGTTGTCACACCATCCTTCCCTTCTGTG
AGTATCGTTGATTGAAGAAATTGGCAAGAAAAAAAATGTATGCAATATAA
ACATAAACATAAACATTATATATATATATATATAGAGAGAGAGAGAGAAT
ATTTTTCATTTTTCTTGGAATGGCAATGCCCGTAGATTTTTTTGTGTGTG
AACAGATTGACAGCACCACTGTTGTGTGATTAGGACATGACAATGATATT
AATGATGTTAACCAACCAGTTAGAAATAGACGATTTTGTCTGGGAAGGCA
AGCGGTCGCATGCCTGTAGGAAGAGCACGCAGGAAGGGAAGAGATGAACT
CCATGATGCCACCTAAGCAAGAGATATCTGTGCAGGACTTAATAGAGAGT
TTTGCTCCACTCTGCAAGGAGAATGTGCTCTCATAAAATAATAAAAAATA
AAAAAGCAGGGTGTACACCAGTTGAGGTGTTGTCCTTTTTTCCCGGGTTC
TTTTATTAGGGGAACAAGGTTTGCTGTTGTTGAAAGGCGTATAGTGGTCC
GTAGTGAATATTTGTTGAGTTGAAATTGTGTGTTGACACGTAGACAGGTC
GGGAAAACTTGGATCTTCCATTGTTCCATGTTTTATTTTATTTTATTTGT
TGCATCTTTTTTTTTCCAAAGGTTGAAACCTCTTCCTCTCACTGCCACTC
TTTCAGTACTTGTGCTTTTTGAGTGGCGTCAAAACTGTACCCACACGCAT
ATACCCCTCCCTCCCAGATGGTGATGCACAGTTCCTAACCCCAACCCTAC
CTAACCTCCCAACTCTTGCATGAAACATCGGCAAAAATAAATTAAAATAA
AACAGATAATCGATTTCGGATTTGCAAAGCGCATTCCGTTCAAGAAAGGG
TCTAACATCCACAACAAGTCCTTCACCCTATGTGGAACACCGGACTACCT
TGCCCCTGAGCTAGTCTTGTCAAAGGGTCACGACAAAAGTGTTGACTACT
GGGCACTGGGATGCTTCCTATACGAACTTCTCGTGGGGAGGACTCCATTC
ACTGACGCTCACCAGGCGGAGATCTTCAAGAAGGTGATGCGCAGCGACCG
GTTCTTGAAGTTCCCAAACAGGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11292:1160..5134+

>mRNA_C-tenellus_contig11292.1.1 ID=mRNA_C-tenellus_contig11292.1.1|Name=mRNA_C-tenellus_contig11292.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=450bp|location=Sequence derived from alignment at C-tenellus_contig11292:1160..5134+ (Choristocarpus tenellus KU2346)
TACATCTACGAAAAATTCAACGCTATCCCAAGATCATCCATGGGAGGGTT
TGCGCCAGCTGCTGCTCAGTTCTTTTGTGGATGTGTAGTTCTTTCCCTTC
AGTACCTTCACAAGATGAGCGTTGCCTATAGGGACCTCAAGCCCGAAAAC
TTGCTTTTGGCCCAGGATGGCTACCTCAAGATAATCGATTTCGGATTTGC
AAAGCGCATTCCGTTCAAGAAAGGGTCTAACATCCACAACAAGTCCTTCA
CCCTATGTGGAACACCGGACTACCTTGCCCCTGAGCTAGTCTTGTCAAAG
GGTCACGACAAAAGTGTTGACTACTGGGCACTGGGATGCTTCCTATACGA
ACTTCTCGTGGGGAGGACTCCATTCACTGACGCTCACCAGGCGGAGATCT
TCAAGAAGGTGATGCGCAGCGACCGGTTCTTGAAGTTCCCAAACAGGTGA
back to top