mRNA_C-tenellus_contig1129.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1129.4.1
Unique NamemRNA_C-tenellus_contig1129.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1129.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1129contigC-tenellus_contig1129:3921..4294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.0861022-CDS-C-tenellus_contig1129:3920..40041680789172.0861022-CDS-C-tenellus_contig1129:3920..4004Choristocarpus tenellus KU2346CDSC-tenellus_contig1129 3921..4004 -
1680789172.1004045-CDS-C-tenellus_contig1129:4210..42551680789172.1004045-CDS-C-tenellus_contig1129:4210..4255Choristocarpus tenellus KU2346CDSC-tenellus_contig1129 4211..4255 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.1160672-UTR-C-tenellus_contig1129:4255..42941680789172.1160672-UTR-C-tenellus_contig1129:4255..4294Choristocarpus tenellus KU2346UTRC-tenellus_contig1129 4256..4294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1129.4.1prot_C-tenellus_contig1129.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1129 3921..4255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1129.4.1

>prot_C-tenellus_contig1129.4.1 ID=prot_C-tenellus_contig1129.4.1|Name=mRNA_C-tenellus_contig1129.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=43bp
MVCKYNRNKRCTDTTSTANDDLGDAPELKEEDLREEWIAGGLD
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mRNA from alignment at C-tenellus_contig1129:3921..4294-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1129.4.1 ID=mRNA_C-tenellus_contig1129.4.1|Name=mRNA_C-tenellus_contig1129.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=374bp|location=Sequence derived from alignment at C-tenellus_contig1129:3921..4294- (Choristocarpus tenellus KU2346)
TTCGACAGGAACCGGTTGTGGGGGGCGGTGGTATAGCGAATGGTTTGCAA
GTATAACCGAAACAAGAGGTGTACAGACACGACTGTGAGTGTAGGAGTGC
GGGAGTTACGATTTAGGAATGTTCTTGGTAGCCCTCCAGGTTGGGCGCTC
TGCGCTGTTGTTATAACGAGTCGAGGTTTGGTACTGATTGGTGTGTGAGG
TGTTGAAGCAGAGGTGATGAGTCACCTGATGTTCCTTTTTTTAATCATTT
TGCAATGTCGGATATTGTGACCCAACCATACGCCTGACAGTCAACAGCAA
ATGACGATTTGGGCGATGCTCCGGAGTTAAAGGAGGAGGACCTTCGGGAG
GAATGGATCGCGGGGGGGCTTGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig1129:3921..4294-

>mRNA_C-tenellus_contig1129.4.1 ID=mRNA_C-tenellus_contig1129.4.1|Name=mRNA_C-tenellus_contig1129.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=129bp|location=Sequence derived from alignment at C-tenellus_contig1129:3921..4294- (Choristocarpus tenellus KU2346)
ATGGTTTGCAAGTATAACCGAAACAAGAGGTGTACAGACACGACTTCAAC
AGCAAATGACGATTTGGGCGATGCTCCGGAGTTAAAGGAGGAGGACCTTC
GGGAGGAATGGATCGCGGGGGGGCTTGAT
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