mRNA_C-tenellus_contig1129.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1129.2.1
Unique NamemRNA_C-tenellus_contig1129.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1129.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1129contigC-tenellus_contig1129:1326..3892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size226
Hectar predicted targeting categoryother localisation
Exons3
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.0186436-CDS-C-tenellus_contig1129:1326..14071680789172.0186436-CDS-C-tenellus_contig1129:1326..1407Choristocarpus tenellus KU2346CDSC-tenellus_contig1129 1327..1407 -
1680789172.0313652-CDS-C-tenellus_contig1129:2389..24491680789172.0313652-CDS-C-tenellus_contig1129:2389..2449Choristocarpus tenellus KU2346CDSC-tenellus_contig1129 2390..2449 -
1680789172.04202-CDS-C-tenellus_contig1129:3808..38921680789172.04202-CDS-C-tenellus_contig1129:3808..3892Choristocarpus tenellus KU2346CDSC-tenellus_contig1129 3809..3892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1129.2.1prot_C-tenellus_contig1129.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1129 1327..3892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1129.2.1

>prot_C-tenellus_contig1129.2.1 ID=prot_C-tenellus_contig1129.2.1|Name=mRNA_C-tenellus_contig1129.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=75bp
CRCGRWKKWTSQVGNTPDTDTLSQHAAQDEYDEAAIDGLILNAPIVIQTV
VEEEPGREGVVLSNEDLVGDEEMGR
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mRNA from alignment at C-tenellus_contig1129:1326..3892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1129.2.1 ID=mRNA_C-tenellus_contig1129.2.1|Name=mRNA_C-tenellus_contig1129.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2567bp|location=Sequence derived from alignment at C-tenellus_contig1129:1326..3892- (Choristocarpus tenellus KU2346)
TGCAGATGTGGAAGATGGAAGAAATGGACGAGTCAAGTGGGAAACACCCC
AGATACAGATACCTTGTCACAGCATGCAGCCCAAGTGAGGCACAGATCGC
TGAGAACTATGGATTAATGTGCAGTCGCTATTGATGGTCTGTTCTCCGCT
GGCGTCTGACCCCTTCCCTTGCCCCTGCCCTGTTTCGAGCTCGATATTGC
TCTTGTTTCTGCTGTGCATCTGCTCCAGTTGGATAACCGTTTTGTATGTT
ATTATTTGTTGACGAGGTCGGTTCGCTAAACATGAAAAATCAAATAGAGT
TCACTATATACCAAATTTTGTAGCACAGAAGATGCTGGGACAAGCATCAT
GTGCAATAAATGCCAAGCAACCGTCAGGCAGATATAGCCAACCTAGAACC
TGACTCCAACCTCCGTCATTGCCATCCTTGTAACCTGTGGAATTGGCCAG
GTAATCAGAATGCATCATTGTTTGTCTCCTCTCATAGTAATGGTCTGGCA
ACAGCAGACACGCACACACTGTACTCTAATCATAACTGGCTGTGGCTTTG
TGTGTGTGTGTGTGTGTCAGGTGCAGATACTCCCTCCTCACCACACAACT
AATCTAGTATCCATTGAGCCTGCATTTGTGACCGTTTCACACCTCCCAAT
AATATGCCCTCGACAATCCCCATCCTCCCCTTTGCATTAGCTCCACCTGC
AGTATTGGACATGAGGTACAAGCTAGGTATGTAATGTACAGTAATCGATG
CAGATTCTCCTATTTTTTTCTACCCCCAATATCGTTATTAGTACTACTTT
TGCTAGTGTTCATTCTCTATTTGGTGAAACTGTAAATGTAACTGTAGAAT
CAGGACTATGTGACCTTTGGGGGCGATACTGGAATTTGCGTACTCCTCAC
TATAGAAATGTACATACTGTGCCCGTCTGTTTATTGTAACGTATCACCTC
CTTGAAAAAGGGATGCTCTCTCTTACCCAGTGTCTTACAGATATTTGCAA
TTCACAATCAAGTAGAACTCGGTATTACACTCCAAAGGATTGATACTAAC
CCGATCTCTCTCTTTTTATATAAACCCAGTAATTCAATGAGTTGGAACTA
AAGTACAGTTGATACATATTATGTATTATGTATGTGTGTGTTTTATAGTA
TGCATTTCCCCATACAAATGCTTGAGACCCTTAATACTATTTATTGTTTG
TTTGTTGCAGTAGTAGGTATCACCACTGACCACCTACTCTGATCTCAAGT
TGGTCTTGAAGCAAGTAAAAAGACCCCGAAACAGGCATACAATACATGGT
GCTACACTCATAAACACAAGAAACACCCACAACCCCCCCCCTGGACGATA
GTTAAATCCTGACAGGTTGCAACTCACTCTTGTAACCCCATTAACTACCC
TAACCCTAGCCCTAACCTTAACCTCAACCTTAACCCTATCAAGGATGAGT
ATGATGAGGCAGCGATTGATGGTCTCATATTGAATGCCCCAATAGTGATA
CAGGTGGGTGGCCCCTTTATCATTGAAGAAAATACAGTGGTGTGTGCATA
CCCCTGTAGAAGAACCAATCCACCACTGCCCCCACTTGCAGTATATTCGT
AGTATTTTATTATTGTTTTCATGTAATGTTGTTAGTTGTTGTGAGAGTGC
TACTACAGTGTGTTGTTGTTTATGACCTCACATTGTGTGAGAGGCGTGTT
CTACTCTTAAATATGTTTTTGCTCTTGTTAGTATTGGGGGTGGCATTATT
TTTGGTAGAGAGTGATGGGATTAATTGAAATGCTGCAGCGTTTGTTTTAG
TGATTGTTTCAATACCAGGTGGAGTACATCATACATACTTTCTGCAAAGA
AATAAATTAGACCTTGAGAGCGTTACAGTTGTGACAATATAGGGTATAGT
CACAGGCAGACTCTGCTCGTATTGTTATTAGTATTGTTTGATATTGTATT
TTTTCTTGTGTTCAAGATCTAATTGATTGTATTTGAACTACAATTGGAAC
AAAGAAATAATGTAACGTGATGAGAGGTAGGTATGTATGCCTTGACTTTA
TTTTTGGAATACCTAATAGTAATCTTGATTTTCCTGTAATGTACCAATCT
GTTCCTATTGTAATTGGAGTACTACTGCACTAGTACTGTAGAGGAATATA
TCCCTATACATATATTTGTACATTGAGACATAGATTATGCCATTACATGT
AGCACACTTGAAAAGGATAATAAATAAACTAATGTATGGAATTTTTGTTC
TGCTGGAGCGTTTGTACTTGAAGTGCCAAAATGTAGAAGAAGTAGAATAT
TCACTTTCTTACTGAAACAACAGCTAGAGATATAGATGGCACTACACACA
CTGCACTAGTTGTTTTTAACATATTGAACTGTCTAACTAACTACCTAAAT
ATCTAACAATTGTTGTTACACCAAGAATGATTCCTCTGCCCCATGCCCGC
CTTGATATTTTATATTATTATTTTTTTCTGTGCAGACTGTAGTAGAGGAG
GAACCTGGAAGGGAGGGTGTGGTGCTGAGCAATGAGGACTTGGTGGGAGA
TGAAGAAATGGGGAGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig1129:1326..3892-

>mRNA_C-tenellus_contig1129.2.1 ID=mRNA_C-tenellus_contig1129.2.1|Name=mRNA_C-tenellus_contig1129.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=225bp|location=Sequence derived from alignment at C-tenellus_contig1129:1326..3892- (Choristocarpus tenellus KU2346)
TGCAGATGTGGAAGATGGAAGAAATGGACGAGTCAAGTGGGAAACACCCC
AGATACAGATACCTTGTCACAGCATGCAGCCCAAGATGAGTATGATGAGG
CAGCGATTGATGGTCTCATATTGAATGCCCCAATAGTGATACAGACTGTA
GTAGAGGAGGAACCTGGAAGGGAGGGTGTGGTGCTGAGCAATGAGGACTT
GGTGGGAGATGAAGAAATGGGGAGG
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