mRNA_C-tenellus_contig11285.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11285.1.1
Unique NamemRNA_C-tenellus_contig11285.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: A0A6H5KDS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.840e-16
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    7 MDRFVLQYHICQFGTRKLARRNLHQLCSSVTRLAEGYPRIKLFALLVGVPVMVKSKPYKETLQEFKPFVCSDFVVPMLVRLCPPGEKLD 273
            M R +LQ+       RK   R L+    S   +    PR + FA L+GVP+MV+++PY E + EF+PF CSDF++P+L +LCPPGEK+D
Sbjct:    1 MGRSLLQHF------RKPFERILNGARYSFPHVRARRPREQAFAELIGVPIMVQARPYVERVVEFRPFACSDFIIPVLTKLCPPGEKMD 83
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: D7FX47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX47_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.680e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 QRMDRFVLQYHICQFGTRKLARRNLHQLCSSVTRLAEGYPRI 126
            QRMDRFVLQ+H+ QFGT+KLARRNLHQLC S+T+LA   PRI
Sbjct:  444 QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRI 485
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: A0A6H5K7X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.780e-11
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QRMDRFVLQYHICQFGTRKLARRNLHQLCSSVTRLAEGYPRI 126
            QRMDRFVLQ+H+ QFGT+KLARRNLHQLC S+ +LA   PRI
Sbjct:  558 QRMDRFVLQFHVRQFGTKKLARRNLHQLCKSIAKLAPTNPRI 599
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: D7FX46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX46_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 5.850e-10
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  160 MVKSKPYKETLQEFKPFVCSDFVVPMLVRLCPPGEKLDQ 276
            MV+++PY E + EF+PF CSDF++PM  +LCPPGEK+D+
Sbjct:    1 MVQARPYAERVAEFRPFACSDFIIPMFTKLCPPGEKMDR 39
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: A0A2R5GSF5_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSF5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.660e-9
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    4 RMDRFVLQYHICQFGTRKLARRNLHQLCSSVTRLAE-GYPRIKLFALLVGVPVMVKSKPYKETLQEFKPFVCSDFVVPMLVRLCPPGEKLDQ 276
            R D+FVL+ HI QFG+RK+A+RNL +L ++V   A+ G   +++FA+L GV +      +  +L  + P + SD+ +P LVR+     K+ Q
Sbjct:  446 RFDKFVLEQHIMQFGSRKMAKRNLKRLFNTVRYHADQGDAIMRMFAILCGVDIAPSR--HDVSLTTYDPHLASDYYLPTLVRILDGDSKVAQ 535
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: A0A7S2XV41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV41_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.360e-6
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   88 SSVTRLAEGYPRIKLFALLVGVPVMVKSKPYKETLQEFKPFVCSDFVVPMLVRLCPPGEK 267
            +SV RLA  YPRIK+FA L GVP++V+    +E   ++KP   +D+V+PML R+     K
Sbjct:    1 NSVRRLARSYPRIKVFAKLCGVPILVEHG-MEELDGKYKPRAATDYVLPMLQRIMKLSSK 59
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: A0A7S2WKK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WKK7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.850e-6
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 RMDRFVLQYHICQFGTRKLARRNLHQLCSSVTRLA-EGYPRIKLFALLVGVPV 159
            R D+FV    + Q+G++K+ARRNL +L  +V + A EG PR+++FA+LVG+ +
Sbjct:   47 RFDQFVFDQFVMQYGSKKIARRNLRRLFITVRQYALEGDPRMRMFAILVGLDI 99
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BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Match: D7FNA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA3_ECTSI)

HSP 1 Score: 47.4 bits (111), Expect = 5.980e-5
Identity = 21/54 (38.89%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:  112 GYPRIKLFALLVGVPVMVKSKPYKETLQEFKPFVCSDFVVPMLVRLCPPGEKLD 273
             +PR+ LFA L G+PV  +        ++F+PF  +D+ +P++  L PPGE LD
Sbjct:   16 AHPRVTLFAKLSGIPVSTEDS------RDFRPFALTDYFLPIVRLLVPPGEDLD 63
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KDS0_9PHAE7.840e-1644.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX47_ECTSI3.680e-1276.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7X3_9PHAE1.780e-1173.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX46_ECTSI5.850e-1058.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GSF5_9STRA2.660e-938.04Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S2XV41_9STRA2.360e-645.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WKK7_9STRA2.850e-645.28Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
D7FNA3_ECTSI5.980e-538.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11285contigC-tenellus_contig11285:4229..4831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004290.1
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.9113603-UTR-C-tenellus_contig11285:4228..42341680789171.9113603-UTR-C-tenellus_contig11285:4228..4234Choristocarpus tenellus KU2346UTRC-tenellus_contig11285 4229..4234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.9251604-CDS-C-tenellus_contig11285:4234..43571680789171.9251604-CDS-C-tenellus_contig11285:4234..4357Choristocarpus tenellus KU2346CDSC-tenellus_contig11285 4235..4357 +
1680789171.971197-CDS-C-tenellus_contig11285:4681..48311680789171.971197-CDS-C-tenellus_contig11285:4681..4831Choristocarpus tenellus KU2346CDSC-tenellus_contig11285 4682..4831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11285.1.1prot_C-tenellus_contig11285.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11285 4235..4831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11285.1.1

>prot_C-tenellus_contig11285.1.1 ID=prot_C-tenellus_contig11285.1.1|Name=mRNA_C-tenellus_contig11285.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=91bp
MDRFVLQYHICQFGTRKLARRNLHQLCSSVTRLAEGYPRIKLFALLVGVP
VMVKSKPYKETLQEFKPFVCSDFVVPMLVRLCPPGEKLDQ*
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mRNA from alignment at C-tenellus_contig11285:4229..4831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11285.1.1 ID=mRNA_C-tenellus_contig11285.1.1|Name=mRNA_C-tenellus_contig11285.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=603bp|location=Sequence derived from alignment at C-tenellus_contig11285:4229..4831+ (Choristocarpus tenellus KU2346)
CAGCGCATGGATCGCTTTGTTCTTCAATATCACATATGCCAGTTTGGGAC
TCGCAAGCTTGCAAGACGAAACTTGCACCAACTGTGCTCCAGCGTCACAC
GCCTGGCTGAAGGATACCCTCGAATAAAGGTGTCCTTACTCATGTCTATT
CTGCTTCCCATCACAAGTGATATTGGCCCGTCGACTAGGAAGGGAGTACG
AGCCTGGGTAGAGCTCTAGTGAGTGCATAAGTGTGTGGGGTATTTGGGAT
GGGTGATTGGAGAATGTTGGTAGGGGGCAGGGCCCAAGGGTAAAGACTAG
AGTGCATTCTGTGGATATATTGGTCAAGGACAGAGTACCAAAGTTATCAC
TGAACGTCAGGCATGCAACATTCCCCAAGTCACCGAAACTCTACTGGTAA
TGCCTTCCTTGATTTAGGTCAACTCTTGCCAATCCCCCCACATTTCATGC
CAGTTATTTGCGTTGTTGGTGGGGGTACCTGTGATGGTCAAGTCAAAGCC
CTACAAAGAAACCCTGCAGGAGTTCAAGCCATTTGTCTGCTCGGATTTTG
TGGTCCCCATGCTTGTCCGCCTCTGTCCTCCAGGGGAGAAGCTTGACCAG
TGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11285:4229..4831+

>mRNA_C-tenellus_contig11285.1.1 ID=mRNA_C-tenellus_contig11285.1.1|Name=mRNA_C-tenellus_contig11285.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=273bp|location=Sequence derived from alignment at C-tenellus_contig11285:4229..4831+ (Choristocarpus tenellus KU2346)
ATGGATCGCTTTGTTCTTCAATATCACATATGCCAGTTTGGGACTCGCAA
GCTTGCAAGACGAAACTTGCACCAACTGTGCTCCAGCGTCACACGCCTGG
CTGAAGGATACCCTCGAATAAAGTTATTTGCGTTGTTGGTGGGGGTACCT
GTGATGGTCAAGTCAAAGCCCTACAAAGAAACCCTGCAGGAGTTCAAGCC
ATTTGTCTGCTCGGATTTTGTGGTCCCCATGCTTGTCCGCCTCTGTCCTC
CAGGGGAGAAGCTTGACCAGTGA
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