mRNA_C-tenellus_contig11284.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11284.1.1
Unique NamemRNA_C-tenellus_contig11284.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: D7FS20_ECTSI (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS20_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 1.230e-101
Identity = 169/262 (64.50%), Postives = 205/262 (78.24%), Query Frame = 1
Query:   25 KGLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTGYTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDGDA--DCDGIGPEQ-SVLSPAQAKNVIAVGAAESGGSAQRDMDTVSYFSSRGPTPDGRIKPDIVAPGDALWSANADNSGETCAFNSR 801
            + L GQDEII VADTGLD+ HC FRE+DG D +  S WD+P+TDL KRKVVQYIDFVDDFDE +GHGTHVAGS+ GA +   AG +  DGMAF GKL+VFDFGDS N N+L+TPD++D ++LEPAY GGARVHSNSWDT++T YT +S E D FV+T+   +VV AAGNCGD    D   +C  +  ++ +VLSPAQ KNV+AVG++ESGG   +DMDTVSYFSS+GPT DGRIKPD+VAPGD  WSA AD +GETC F S+
Sbjct:  431 ENLQGQDEIIGVADTGLDLNHCQFREDDG-DNIEASDWDDPVTDLDKRKVVQYIDFVDDFDEADGHGTHVAGSICGAQSGEDAGDDDADGMAFQGKLAVFDFGDSDNFNALTTPDEIDSVILEPAYDGGARVHSNSWDTVSTEYTALSNEVDEFVYTHQNMLVVFAAGNCGDTSTDDLIDNCSVLDDDEGTVLSPAQGKNVVAVGSSESGGVTGKDMDTVSYFSSKGPTIDGRIKPDVVAPGDPTWSAAADTTGETCEFGSQ 691          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: A0A836CCI7_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI7_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.790e-65
Identity = 134/282 (47.52%), Postives = 181/282 (64.18%), Query Frame = 1
Query:   22 AKGLLGQDEIIAVADTGLDI-------YHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTGYTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDGDADCDGIGPE------QSVLSPAQAKNVIAVGAAES------GGSAQRDMDTVSYFSSRGPTPDGRIKPDIVAPGDALWSANADN--SGETCAFNSRQ 804
            + G+LG  E+I +AD+G+D         HC F + DG+  V  S+W+ P+TD ++RK++QYI +VD  DE  GHGTHVAG++ GA   TTAG    DG AF GK++VFDFG S   +SLS P  V  ++L P+Y  GARVHSNSW T +     I  E D +V  + + ++V+AAGNCGD+ +   DC   GPE       SV SPAQAKNV+AVGA+ +      GG    D++T+++FS+RGPT DGRIKPD+V PG +L SA+A+    G +CA  SRQ
Sbjct:  318 SAGILGAGEVIGMADSGVDSPVVSVDRRHCSFYDSDGI-IVKASAWNAPVTDNTRRKIIQYIAYVDSEDEKNGHGTHVAGTLVGARDGTTAGSTITDGQAFEGKITVFDFGASDGTDSLSVPGDVQTMLLAPSYNAGARVHSNSWGTQSQ----IDVEMDTYVNDHQQMLIVIAAGNCGDVSNTSLDC---GPEFTGPNSPSVFSPAQAKNVVAVGASYNYPNNVDGG----DINTIAFFSARGPTVDGRIKPDVVGPGYSLTSASANTPGGGPSCASASRQ 587          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: A0A835YK17_9STRA (Subtilisin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK17_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.050e-62
Identity = 136/258 (52.71%), Postives = 170/258 (65.89%), Query Frame = 1
Query:   28 GLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTA--GGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTGYTTISYEFDRFVFTYPEFVVVVAAGNCGDI-----GDGDADCDGIGPEQSVLSPAQAKNVIAVGAAESGGSAQR---DMDTVSYFSSRGPTP-DGRIKPDIVAPGDALWSANAD 768
            GL    EIIAVAD+G+D+  C F EED  D ++ S++ NP+TDL+KRKVVQY+ +VD  DE  GHGTHVAG++AGA  S     G + GDG+AFA KL+VFDFGD++   +L TP  +   ML   Y  GARV SNSW      YTT+  + D + +  P+ VVVVAAGNCGD      GDG A   G G   SVLSPA AKNVIAVGA+ES G++      +  V+YFSS+GP   DGRIKPD+VAPG   +SA A+
Sbjct:   72 GLQADTEIIAVADSGVDLASCFFSEEDPTDNIACSTYTNPVTDLAKRKVVQYVGYVDCGDEQAGHGTHVAGTLAGAQRSAAGAPGQHLGDGLAFAAKLAVFDFGDAAG--ALYTPSDLAAQMLAAPYAAGARVSSNSWGAARDSYTTLDAQLDAWAYARPDAVVVVAAGNCGDAASGCAGDGGAAIAGAG---SVLSPALAKNVIAVGASESTGASAPLGGGVGNVAYFSSQGPLAGDGRIKPDVVAPGYHTFSAQAN 324          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: D7FS58_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS58_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.700e-60
Identity = 126/261 (48.28%), Postives = 172/261 (65.90%), Query Frame = 1
Query:   25 KGLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTGYTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDG----DADCDGIGPEQSVLSPAQAKNVIAVGAAESGGSAQR---DMDTVSYFSSRGPT-PDGRIKPDIVAPGDALWSANADNSGET 783
            +G+ G  EIIA+AD+GLD+  C F E+   D +  SSW NP+ DL+KRK+VQY+ FVD  D + GHGTHVAGS AG +++++ G + GDG  F  KL+VFDFG+S  G  L TP  +   ML+P Y  GAR+ +NSW  + T YT++  + D F +   + V+V+AAGNCGD   G    +AD  G G   S+LSPA  KN+I+VGA+E+  S      ++D V+YFSS+GPT  D RIKPD+VAPG  L+SA+A    E+
Sbjct:  244 EGIDGSTEIIAMADSGLDVNSCFFTEDLTDDNIDCSSWSNPVFDLTKRKIVQYVGFVDCVDTENGHGTHVAGSAAGGLSNSSPGEHFGDGAGFGAKLAVFDFGNSEGG--LVTPSSLKSQMLQPPYDIGARISTNSWGAVRTTYTSLDRQVDDFAYLNQDMVIVIAAGNCGDEISGCQYQNADIYGSG---SILSPALGKNIISVGASEASPSTAGLADNVDEVAYFSSQGPTVDDNRIKPDVVAPGYHLFSASAKPDQES 499          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: A0A835Z5P2_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P2_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.150e-47
Identity = 132/310 (42.58%), Postives = 169/310 (54.52%), Query Frame = 1
Query:   22 AKGLLGQDEIIAVADTGLDIYHCDFREED----------GVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKG-GARVHSNSWDTLNTG----------YTTISYEFDRFVFTYPEFVVVVAA------------------------------------GNCGDIGDGDADCDG-IGPEQSVLSPAQAKNVIAVGAAESG-GSAQR--DMDTVSYFSSRGPTP-DGRIKPDIVAPGDALWSANA 765
            + GL G  E+IA++D+G+D   C F EE               V  S++ +P+TDL +RK+VQY+ F D  D   GHGTHVAG++AGA A  TAG + GDG+AF  KL+VFD G S    +L TP  +   ML P+YKG GAR+ +NSW  +             YTT+  + D + +  P+ V+VVAA                                    GNCGD G G A   G +    SV+SPA AKNVIAVGA+ES  GSA    D+D V+YFSS+GPTP DGRIKPDI+APG    SA A
Sbjct:  325 SAGLRGGGEVIAISDSGVDAASCFFTEEPRXXXXXXXXXXXXAVQCSNFTSPVTDLRRRKIVQYVGFADCADAPGGHGTHVAGTLAGAQAGATAGRHLGDGIAFDAKLAVFDLGASDG--TLLTPADLKAQMLTPSYKGAGARISNNSWGAIXXXXXXXXXXXXMYTTLDRQMDMWAYNNPDAVLVVAATFPTPSQYPHPRXXXXXXXXXXXXXXXXXXXXXXXAGNCGDKGSGCAGGAGQLAGAGSVMSPALAKNVIAVGASESALGSAALGGDVDNVAYFSSQGPTPGDGRIKPDILAPGYHTVSAEA 632          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: A0A7S1BTB4_9STRA (Subtilisin n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTB4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.040e-44
Identity = 115/266 (43.23%), Postives = 159/266 (59.77%), Query Frame = 1
Query:   28 GLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAG-AIASTTAGGNAG-----DGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTGYTTI-SYEFDRFVFTYPEFVVVVAAGNCGDIGDGDADCDGIGPEQSVLSPAQAKNVIAVGAAESGGSA----QRDMDTVSYFSSRGPTPDGRIKPDIVAPGDALWSANADNSGETCAF 792
            GL G+ +I+AV+DTGLD   C FR+E  V  V P   +N   D + RKVVQYI + D  D  +GHGTHV GS+ G ++      G  G     +G+A   K+S +D GDSS   +L  P   + +++ P Y  GA+VHS SW ++N  Y +  + EFD F++ + +F+++VAAGN GD G             +V  PA AKN+I+VGA ES GS+     + MD ++ FSSRGPT DGRIKPD+VAPG  + SA+A    E+CA 
Sbjct:  282 GLNGEGQIVAVSDTGLDTKSCYFRDETHV--VMPQL-ENVGVDTAHRKVVQYIAYADQTDAPQGHGTHVVGSIVGRSLVEKPLLGTLGTKLNQNGIAENAKISFYDIGDSSQ--ALYVPYPYNQVLI-PGYDAGAKVHSASWGSVNVNYYSEGAAEFDEFMYYHQDFLILVAAGNSGDAG-----------LNTVSDPATAKNIISVGATESLGSSFISGMQGMDYLASFSSRGPTKDGRIKPDVVAPGFFVASASAVPQSESCAL 530          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: A0A7S1TUV5_9STRA (Subtilisin (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUV5_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.890e-44
Identity = 111/264 (42.05%), Postives = 156/264 (59.09%), Query Frame = 1
Query:   28 GLLGQDEIIAVADTGLDIYHCDFREEDGVD-PVSPSS----W------DNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTGYTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDGDADCDGIGPEQSVLSPAQAKNVIAVGAAESGGSAQRDMDTVSYFSSRGPTPDGRIKPDIVAPGDALWSANADNSGETC 786
            G+LG+ ++  ++DTGLD  HC F E DG   P    S    W      D    D ++RKVVQY+ +VD+ D + GHGTH A ++AG+   T       DG+A   +++ FD G+S    SL  P+  +++ L PAY  GARVHSNSW   N  Y + + EFD F++  P+F+ +VAAGN GD   GD+ C     + SV SPA +KN+I+VGA+ +       +   +YFSS+GPT DGR KPD+VAPG  + +A A  SG +C
Sbjct:  364 GILGEGQVAGISDTGLDQRHCHFSEADGSTLPGDECSRQWFWEDGTCRDEATFDSTRRKVVQYVAYVDNDDYESGHGTHCASTIAGSNDQTHTETTNYDGVAPFAQVAFFDLGNSLG--SLDVPNYYNEL-LGPAYDAGARVHSNSWGASNAAYDSSAREFDVFMYENPDFLGLVAAGNSGDC-SGDSFCG----DYSVGSPATSKNIISVGASCNTDDCGTPIQN-AYFSSQGPTEDGRRKPDLVAPGFYVHAAKAQPSGASC 618          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: A0A4D9CUI1_9STRA (Subtilisin n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUI1_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.840e-42
Identity = 109/260 (41.92%), Postives = 149/260 (57.31%), Query Frame = 1
Query:   28 GLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTG-YTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDGDADCDGIGPEQSVLSPAQAKNVIAVGAAESGGSAQRDMDTVSYFSSRGPTPDGRIKPDIVAPGDALWSANADNSGETCAFNSRQ 804
            GL G ++++ V DTG+D   C F +  G  P+  ++      D S+RK+VQY+ + D  D + GHGTHVAG+VAG    T+   ++ +G+A   KL+ FD G SS G  L+ P      +  P Y  GAR+ SNSW T +   YT+   E D+F++ Y + +V+V+ GN G         +GIG    V SPA +KNV++VGA+ S   A  D   V+YFSS GPT DGRIKPDIV PG  L SA    SG TC    +Q
Sbjct:  427 GLDGTNQVVQVVDTGVDQNSCFFSDAKG--PLPTTTISEAAFDSSRRKIVQYVQWADSTDVENGHGTHVAGTVAGVSLDTSMDMSSYEGVARGAKLAFFDMGFSSGG--LTLPSNFATRLFPPGYAAGARIFSNSWGTPSAKFYTSADTEIDKFMYEYDDTLVLVSGGNKGG--------EGIG---GVASPALSKNVLSVGASLSDRYADLDPTHVAYFSSWGPTKDGRIKPDIVTPGRRLVSAA---SGATCGVTIKQ 668          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: K8ZC45_NANGC (Subtilisin n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZC45_NANGC)

HSP 1 Score: 164 bits (414), Expect = 4.330e-42
Identity = 108/260 (41.54%), Postives = 149/260 (57.31%), Query Frame = 1
Query:   28 GLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTG-YTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDGDADCDGIGPEQSVLSPAQAKNVIAVGAAESGGSAQRDMDTVSYFSSRGPTPDGRIKPDIVAPGDALWSANADNSGETCAFNSRQ 804
            GL G ++++ V DTG+D   C F +  G  P+  ++      D S+RK+VQY+ + D  D + GHGTHVAG++AG    T+   ++ +G+A   KL+ FD G SS G  L+ P      +  P Y  GAR+ SNSW T +   YT+   E D+F++ Y + +V+V+ GN G         +GIG    V SPA +KNV++VGA+ S   A  D   V+YFSS GPT DGRIKPDIV PG  L SA    SG TC    +Q
Sbjct:  426 GLDGTNQVVQVVDTGVDQNSCFFSDAKG--PLPTTTISEAAFDSSRRKIVQYVQWADSTDVENGHGTHVAGTMAGVSLDTSMDMSSYEGVARGAKLAFFDMGFSSGG--LTLPSNFATRLFPPGYAAGARIFSNSWGTPSAKFYTSADTEIDKFMYEYDDTLVLVSGGNKGR--------EGIG---GVASPALSKNVLSVGASLSNRYADLDPTHVAYFSSWGPTKDGRIKPDIVTPGRRLVSAA---SGATCGVTIKQ 667          
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Match: W7TM23_9STRA (Subtilisin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM23_9STRA)

HSP 1 Score: 163 bits (413), Expect = 6.490e-42
Identity = 120/330 (36.36%), Postives = 166/330 (50.30%), Query Frame = 1
Query:   28 GLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPITDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAI-----------------------------------------------------ASTTAGGNAGD------------------GMAFAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNTG-YTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDGDADCDGIGPEQSVLSPAQAKNVIAVGAAESGGSAQ-RDMDTVSYFSSRGPTPDGRIKPDIVAPGDALWSANAD--NSGETCAF 792
            GL G+ E+I VADTGLD   C F  ++ +  V+ SSW+ P TD+++RKVVQY+ FVD  D  EGHGTHV+GS+AG +                                                     A    G + GD                  GMA   K++ FD  D  +GN LSTP     ++  PAY+ GAR+HSNSW  +N G Y     + D++ + + +F+++ AAGN G+        DG     S+ SP   KNV+ VGA ESG   Q +D D ++ FSSRGPT DGR+KPDIV+PG  ++SA +   N+G TC++
Sbjct:  473 GLTGKGELIGVADTGLDDESC-FFYDNALGQVARSSWEAPFTDMTQRKVVQYVSFVDGGDLVEGHGTHVSGSLAGVVEPRNEGRRGHFCAEGETLACTGMCLSAPTCQLKDYGYVSCQDWLQDGHCDAWFACPLYGCDGGDCVGLACNPNPEEALMANQGMAREAKIAFFDIADE-HGN-LSTPSDFHRMLFPPAYEAGARIHSNSWG-INVGEYLFDDMKIDQYAYEHQDFLIIYAAGNYGE--------DGF---HSIGSPGNTKNVLTVGATESGPERQSQDRDYIAKFSSRGPTKDGRLKPDIVSPGSYIYSARSAGYNNGGTCSY 787          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS20_ECTSI1.230e-10164.50Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
A0A836CCI7_9STRA1.790e-6547.52Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YK17_9STRA1.050e-6252.71Subtilisin (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
D7FS58_ECTSI1.700e-6048.28Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A835Z5P2_9STRA1.150e-4742.58Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S1BTB4_9STRA1.040e-4443.23Subtilisin n=1 Tax=Corethron hystrix TaxID=216773 ... [more]
A0A7S1TUV5_9STRA9.890e-4442.05Subtilisin (Fragment) n=1 Tax=Phaeomonas parva Tax... [more]
A0A4D9CUI1_9STRA1.840e-4241.92Subtilisin n=2 Tax=Nannochloropsis salina CCMP1776... [more]
K8ZC45_NANGC4.330e-4241.54Subtilisin n=2 Tax=Nannochloropsis gaditana TaxID=... [more]
W7TM23_9STRA6.490e-4236.36Subtilisin n=1 Tax=Nannochloropsis gaditana TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11284contigC-tenellus_contig11284:545..5038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0RAT4
PFAMsPeptidase_S8
Model size822
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.79e-37
EggNOG OGsCOG1404@1|root,2T47B@2759|Eukaryota,2XEU1@2836|Bacillariophyta
DescriptionSubtilase family
Cds size822
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.8248906-CDS-C-tenellus_contig11284:544..8651680789171.8248906-CDS-C-tenellus_contig11284:544..865Choristocarpus tenellus KU2346CDSC-tenellus_contig11284 545..865 -
1680789171.8388398-CDS-C-tenellus_contig11284:1250..13261680789171.8388398-CDS-C-tenellus_contig11284:1250..1326Choristocarpus tenellus KU2346CDSC-tenellus_contig11284 1251..1326 -
1680789171.8522916-CDS-C-tenellus_contig11284:2244..22971680789171.8522916-CDS-C-tenellus_contig11284:2244..2297Choristocarpus tenellus KU2346CDSC-tenellus_contig11284 2245..2297 -
1680789171.8631105-CDS-C-tenellus_contig11284:3503..36671680789171.8631105-CDS-C-tenellus_contig11284:3503..3667Choristocarpus tenellus KU2346CDSC-tenellus_contig11284 3504..3667 -
1680789171.8757067-CDS-C-tenellus_contig11284:4830..50381680789171.8757067-CDS-C-tenellus_contig11284:4830..5038Choristocarpus tenellus KU2346CDSC-tenellus_contig11284 4831..5038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11284.1.1prot_C-tenellus_contig11284.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11284 545..5038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11284.1.1

>prot_C-tenellus_contig11284.1.1 ID=prot_C-tenellus_contig11284.1.1|Name=mRNA_C-tenellus_contig11284.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=274bp
MLVSSAAAKGLLGQDEIIAVADTGLDIYHCDFREEDGVDPVSPSSWDNPI
TDLSKRKVVQYIDFVDDFDEDEGHGTHVAGSVAGAIASTTAGGNAGDGMA
FAGKLSVFDFGDSSNGNSLSTPDQVDDIMLEPAYKGGARVHSNSWDTLNT
GYTTISYEFDRFVFTYPEFVVVVAAGNCGDIGDGDADCDGIGPEQSVLSP
AQAKNVIAVGAAESGGSAQRDMDTVSYFSSRGPTPDGRIKPDIVAPGDAL
WSANADNSGETCAFNSRQVRRKV*
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mRNA from alignment at C-tenellus_contig11284:545..5038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11284.1.1 ID=mRNA_C-tenellus_contig11284.1.1|Name=mRNA_C-tenellus_contig11284.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4494bp|location=Sequence derived from alignment at C-tenellus_contig11284:545..5038- (Choristocarpus tenellus KU2346)
ATGTTGGTTTCCTCTGCTGCTGCAAAGGGCTTGCTTGGGCAAGATGAGAT CATCGCAGTGGCAGACACGGGGTTGGATATCTACCACTGTGACTTCAGGG AGGAAGACGGAGTGGATCCGGTTTCACCCAGCTCATGGGACAACCCCATT ACGGACCTAAGCAAGCGCAAAGTTGTTCAGTACATTGATTTTGTGGATGA CTTTGATGGTGAGTGGACTGTGTTGTAAAACGTGGGTCGATAGTCGATAT GAAAGGGTGAGGCAGGGTAGAAACAGGTAGGAAGTATGGTGGAGCACAGG CAGTGGGGGGAGGGGAAAGAACGTCTTCAAAGTGACTACTTGTGTGTAGT ATACAGTGTAGGGGGTGGGCCATGTTGTGGCTATATATATATATATATTT TTTTTTTTTCCCTTGTTGCTTGGAGTTCTAGGACTTCTTACCCCTCTATA ATCAGTAAAGTCCCCATGTACGGTGGAGCTGTATGTGGCATACCAAGCAG GAGTTGTTTGGCGCTGAAATGTTGCCATATTGTAACAAAGGGTCAGGGCT CCTTCCCCACCCCCCTTAGACTCCTTTCTGTGATCTACCCCATTGTGCAA TTGGCTGCAGTCTGTGGGGATGATGCACTGCTTCTTACTAGGTCATTGGT GCAGAGCAACTGGTTTTCGACAGTGTCGTTTTTCTTCCCAAAATTTTGGG GCCTACAGTCATGCAGTATGCCTGCGCAGACCATGAGTGAAGCCCCCACC GCCCTGGTCAGGTGTAAGGTACCCTACAGTACTGGGGGGCCACGTTTGGG AAACAACCATTATCCATTTGAATGATGTGTTGGACACTGCATCCACTAAT TTGCACATTCCCTTCCACTGCAAGTGACCAAATGGTTAGAACTTCCTGTG TGGTTTCTTATTGGTCGTAGACCTCTAGTGTGATGAGGCATTTCATTGAA TGTGTTCATAGTCAGCCTTACACAATGTGCAGATCTACAATCTTTTTGTC CTCCCTCCCACATACTTTTTTTGTCAGTTACAATGGGGGGCTGGTTTTCT CATCCCTCTACCTTCTGGAATGGTTGTTTGAACTTTTCCACAGGGAGATC CCAAGTTGGAGAGATCTTCGAAGCAAAAATGTTATTCTCTTTTAAGATGC TTAACTATACATAGCTCTTTTTGGTCGTCAGCTCAACTCTCACCAATCAC ATTAGCCTTTCCGCAAGCCCTCAATGTTGTATCTGCCCAATTTCTCCTCT TGTTCTAGTGTGTGATAAGCTCTACACAAAAATGGATCAACGCTCTTCTC CTGTCCAAACCTTCACCCTTGACTAGGTACTCTATACCCTAACCCTAACT CAAATTGGTGTCTTATTGCAGAGGATGAAGGGCATGGTACACATGTAGCA GGTTCAGTGGCTGGTGCCATAGCCTCAACTACAGCAGGGGGCAATGCTGG GGATGGGATGGCATTTGCTGGCAAGTTATCTGTGTTTGACTTTGGAGACT CTTCCAACGGAAATTCTCTCAGCACACCAGACCAGGTACAACGGGTAGGG CACATGAGTATTCTTATGATTTGTGGTTTTGGGGGTGAGGGGAGGGGGGG AAGGAGGGTTAATATTCTGGGGTTGTATTGCAGTCGTGAATTTGTTGCAA GGGTAAGGAGATGGTAAAAGGTATAGGTGGTGCAGCTGGACAGATACAAA TACCATTGGGCAAGGTCCTTGGTGATTCAGAAGTGTGCAATGAAAGGAAA TGGAAGCACTGGAACTAAAGGATTGTTAGCTGTGATAGTCCCCCAATCTC CGGGTATATTTGCATAGGCTGTCAGTATCTGAGGAGAGCATTTTTTCATT GTACCACTAGAAATATGCTCAACATGTTTTTCATGAAATGCACTATGATT TCTAAAAGAAATGCCAATGAAAAACTTGTTAAATCATGGAATATTAGTAG AATTATTTGACCAAGAGTACCAAAGAATACTTTTGTGTGACGTGCCTTTT ATTGCAGGTAGTTGAAGCAAGCAAATTTTTGACCACTTCCCCTGTCTTTT TCCACCACAATTAAAAAGTATATGCTTGTCAGACAAGCTTGGCCGGCAGG ATTCAGTCAACCCTGTTAGCCCTAACCTCTCTTGTACGCACACCGGTGTA GAGTAGAGTGTAGACAACCTCCCACCCTGGGCTTTGAACCCTTTTGAAGT CTGCTCTAGTGAAGTGAGGCAATGAAGCCTCATCATATCAATCGGATCAG ATCAGATACGTACTCCTGCTTGGATTTGTCTTGCTCTGACAACGAGCATA TCGCCATGAGAGCTCTTGTTTCCAGTTACCATTCTCTTCCGTTGTAGGTA TACTGAGTGCTATGTAGGCAACGTAGAGCTCAAGAGCAGTGGTGGAAATT TTGGCAGTTCGGTTGGCGGGAGAAGAAGCTTCGCTTGATGGTTGTGCGAG AGCGATGTCAAAACTGTTGGTAGAATCTTACTTTGAAGCACAGGTAACGT ATACATTGTGTAGTATAGTCAAAATCATCAATGCACGCTTTTATACGCAG GAACATCTTTTTTTATTTATTATTGAGCAGTCATGCCGTCCCCACTGACC TCTGATTATTTCACGGCATTGGATCGCTTTCTTTTATTTTTTTTAATCTG AATTTTTCCCGGTAACTAACTCCTTCACTCATTCGATGTCGATGCCCATC TATGTGCGGGCTGTTGTGGCCCTTTGATGGTATCTTGACAGGTGGATGAT ATCATGCTGGAGCCTGCATACAAAGGTGGTGCACGGGTGCACAGGTATGT GTGTTTTCAAAAAGTCTTTTTAGGTTCGAGAGAGAGGGAGGTCCCTCAAG AGTTGCACGGTCGTGAGGTTCATTTGGTATCACTCCAGGAGATTGTTTAA TCTGTTCTGGTATCGAAAATTCTTGAGAGGTTTTGACCTTCCAAGTGTCT TGGTATTGTCTCTCATGATGTCTTGTAGCACATGGAGGTTTCAAAAATGT GATGAATTAATGTGCAACCAGGTGGTGTGCACAGACAATATTTTGCACTT ATTCCCTAACCCCACGAAGAATCTGATTAGATCCTGGAATTGATCACCTG GAAAGATTGTGGGGAAGAGACCCGTGCTGAGTTTTATTTGAAGAGTGACA AATGAATTTTGCCATGGGCACCATGAGATAGGAAATGCTATGACTGACAA GATTGAATAGATTTCTCAGAACATGCCATGGTGTTGCACTGGATGCACAT GCCAAATGGATGAAGCATTGACTGCCTGATGGGCACTATAGGTAACAGTG AGAGACCCTCTCCTGAGGGAACTGATTGCCTCCTCCCAACTTCTCTTGCC TGTGGCGCTGCCTGTCCTAGAGGCCTACTTGAAATGCTTATCTCCGGCCC CGCCCCCCTTGCCCTTTTGCTATCACACAGTTAAAACATTGTGTCGTTTT TTGTTCCGAATGACTCATCCGCACTACACAATGGTTGACATCATAATCTA TACTACACAATGGTTGACATCATAATCTGTACTACACAATGGTTAACATC ATAATCTGCTGCTTGTACTCTGGAACGCTTTGAAGTGGATCTGTTTGTCA CTGCTGTTGTAGGTACATCTCACCTTTGTTGTATGCTGAAATCCCTGTTC CACACCCTGTATTGGACTCACCTGCTCCACAATGGTTGCTTTCTGTTGAT GTTTGTTGGCAGCAATTCCTGGGATACTCTAAACACTGGCTACACCACCA TCAGCTATGAATTTGATCGCTTTGTGTTTACCTACCCGGTGCGTGGCGTG ACTCTGACGCATCATCTCATGTGCTGGGTAACCTTTACACTTTACACTTC ACAGAGGGAGGGTGGATGATGAGCTTGTTTTGCATGATATCGATGCTGGC ACCACCAATGTTGGAGTCACCTGGACATTTCCCAATTTTTTATGCCATGA AATGGTGTGCAATGGTGTAATGCAAAACTGGGGTGAGATCTGAGTTACAC AAGAAGCAATGAATGACCACCATTGTGAAACACGATGAGGTTAGGTCTCC CCATCCCTTGTGACAGATTTCAACCTGCTGAACCCCTCCTCCCTTATCAA GGCTCACTCTGATCTAAACCCTTGCCCCCCCCTCCCACCCCCCACCCAAC CTACCCCGTTATCCTGACAACAGGAGTTTGTAGTGGTTGTGGCAGCAGGT AACTGTGGTGACATTGGGGATGGTGATGCTGATTGTGATGGCATTGGCCC AGAACAGTCAGTGCTGTCCCCCGCTCAGGCCAAGAATGTCATTGCAGTAG GGGCAGCAGAGTCGGGTGGCTCAGCGCAGAGGGATATGGACACAGTGTCA TACTTCTCTTCAAGGGGTCCCACCCCTGATGGGCGAATCAAGCCAGATAT TGTGGCACCTGGAGATGCTCTCTGGTCTGCCAATGCGGATAACTCCGGAG AAACGTGTGCATTTAACTCACGTCAGGTGAGGAGGAAGGTCTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11284:545..5038-

>mRNA_C-tenellus_contig11284.1.1 ID=mRNA_C-tenellus_contig11284.1.1|Name=mRNA_C-tenellus_contig11284.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=822bp|location=Sequence derived from alignment at C-tenellus_contig11284:545..5038- (Choristocarpus tenellus KU2346)
ATGTTGGTTTCCTCTGCTGCTGCAAAGGGCTTGCTTGGGCAAGATGAGAT
CATCGCAGTGGCAGACACGGGGTTGGATATCTACCACTGTGACTTCAGGG
AGGAAGACGGAGTGGATCCGGTTTCACCCAGCTCATGGGACAACCCCATT
ACGGACCTAAGCAAGCGCAAAGTTGTTCAGTACATTGATTTTGTGGATGA
CTTTGATGAGGATGAAGGGCATGGTACACATGTAGCAGGTTCAGTGGCTG
GTGCCATAGCCTCAACTACAGCAGGGGGCAATGCTGGGGATGGGATGGCA
TTTGCTGGCAAGTTATCTGTGTTTGACTTTGGAGACTCTTCCAACGGAAA
TTCTCTCAGCACACCAGACCAGGTGGATGATATCATGCTGGAGCCTGCAT
ACAAAGGTGGTGCACGGGTGCACAGCAATTCCTGGGATACTCTAAACACT
GGCTACACCACCATCAGCTATGAATTTGATCGCTTTGTGTTTACCTACCC
GGAGTTTGTAGTGGTTGTGGCAGCAGGTAACTGTGGTGACATTGGGGATG
GTGATGCTGATTGTGATGGCATTGGCCCAGAACAGTCAGTGCTGTCCCCC
GCTCAGGCCAAGAATGTCATTGCAGTAGGGGCAGCAGAGTCGGGTGGCTC
AGCGCAGAGGGATATGGACACAGTGTCATACTTCTCTTCAAGGGGTCCCA
CCCCTGATGGGCGAATCAAGCCAGATATTGTGGCACCTGGAGATGCTCTC
TGGTCTGCCAATGCGGATAACTCCGGAGAAACGTGTGCATTTAACTCACG
TCAGGTGAGGAGGAAGGTCTAG
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