mRNA_C-tenellus_contig11278.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11278.2.1
Unique NamemRNA_C-tenellus_contig11278.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11278.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11278contigC-tenellus_contig11278:2503..3969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.5731125-CDS-C-tenellus_contig11278:2502..27901680789171.5731125-CDS-C-tenellus_contig11278:2502..2790Choristocarpus tenellus KU2346CDSC-tenellus_contig11278 2503..2790 +
1680789171.589005-CDS-C-tenellus_contig11278:3886..39671680789171.589005-CDS-C-tenellus_contig11278:3886..3967Choristocarpus tenellus KU2346CDSC-tenellus_contig11278 3887..3967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11278.2.1prot_C-tenellus_contig11278.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11278 2503..3967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11278.2.1

>prot_C-tenellus_contig11278.2.1 ID=prot_C-tenellus_contig11278.2.1|Name=mRNA_C-tenellus_contig11278.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=123bp
ISQGTRARSWSGSRAKVKAGGGGRGIIGCPGRYCFLGRGVPAGQAEGQDK
CHVGGLSGESEDKESQNEETGNVWTGGAAAGAVPGKKRKWCELPLKALLL
DEGVERMRLISQLQLNGGKRSEG
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mRNA from alignment at C-tenellus_contig11278:2503..3969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11278.2.1 ID=mRNA_C-tenellus_contig11278.2.1|Name=mRNA_C-tenellus_contig11278.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1467bp|location=Sequence derived from alignment at C-tenellus_contig11278:2503..3969+ (Choristocarpus tenellus KU2346)
ATCTCTCAAGGCACTAGGGCTAGATCTTGGTCTGGATCCAGGGCAAAGGT
GAAGGCTGGGGGAGGGGGCAGGGGGATTATTGGTTGCCCAGGGCGTTACT
GCTTTCTAGGGAGGGGGGTGCCAGCTGGGCAGGCAGAGGGGCAAGACAAA
TGCCATGTGGGAGGATTGAGTGGTGAAAGTGAAGATAAGGAATCACAGAA
TGAAGAGACTGGGAATGTTTGGACAGGAGGGGCTGCAGCTGGGGCAGTGC
CAGGAAAAAAAAGAAAGTGGTGTGAACTCCCACTCAAGGTATGAGAGTAA
GGGTTAAATTCAAAGGGAAATCTAATTTGTGGATTGATGATGTCTCTCTC
TCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTATGTGTGTATCGAAGGATC
CAGTTGGTGGATAGTTAGTAGTACTGTTAATGTAATAGCAGTGTGCTAGA
CCGTGACATACAGTGTAGAAGGTATAGCGCCATCATTGACAAAAAATAGA
ACCCTTCTTCGTGCCTCGTCTATGTGAGGTGCAGCTGTTTCAGAGTTGAT
TGATACAGTGAGGATGACTTCTCCACATCGCCGCCAATACTACATTGGAA
TGGAGACCTGGACAAAGGTCCCAGCGCTCTAGAGTTTCAAAGTCCTAGGT
ATATTTTCTGGGCTTGATAGATCAGTAAAAAGTGCCCATGTGTGTGTCTC
ATTTGAACCCTTTATGTTTCCATACTATGATGTTTTGTGGGAGGTTGTGG
GCACCCATTGAGCCAAAATTGAGAGGTTGGCAAGGTTGCATTTTTAGGGT
CCTGACAAAGAGCAAAGAGTTGTCATTTGGTACAATTACAGGAAGAACCC
TTGCTGAATTGTGGTGTCACTTTGTGTGTGGGAAGGGGGAATATCAATTT
TGTGTACACTATTTTTCACTTACAGCAATGAAACAGGGTGTATTGCACAG
GTCCATAGCATTTCAGAGGGTAGGTGTTTACCCCTGTTTGTCCATTTGGG
GCTTGGCTTCCCATGACTTTTTTATGCCCTTTTTTCGGTTTTCTGTGAAT
ACAGTTCCTACTCCAAACCATTTTGGAGTAGGTAAAATGTCCACGGCTAT
GAAAGGTGTGTCTGGAGCAAGGATATCGACACTTCTTAACAAACACGGTA
ACCAAAATTACATCAAAATCACAACATTGGATTTATGACCCCGAATGGAC
GCGGCCCTACTCCCTGAAATGCTTAGGATCACACAGTAACAAAGATGGCG
GAAAAAGAAAAAGGGCCCAAACCTGATTACCTCTCAATCACTTTGGTTCA
TAGCCAACCCATATACTGGTACAGGCTACATCTTTTTCTGGCCCTGATCC
AGCTGCTCCTCATGTGGGTTTACTTGGCACACAGGCACTACTCCTGGACG
AGGGTGTGGAGAGGATGAGACTGATATCTCAACTGCAGTTGAATGGGGGC
AAGCGATCAGAGGGCGC
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Coding sequence (CDS) from alignment at C-tenellus_contig11278:2503..3969+

>mRNA_C-tenellus_contig11278.2.1 ID=mRNA_C-tenellus_contig11278.2.1|Name=mRNA_C-tenellus_contig11278.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=369bp|location=Sequence derived from alignment at C-tenellus_contig11278:2503..3969+ (Choristocarpus tenellus KU2346)
ATCTCTCAAGGCACTAGGGCTAGATCTTGGTCTGGATCCAGGGCAAAGGT
GAAGGCTGGGGGAGGGGGCAGGGGGATTATTGGTTGCCCAGGGCGTTACT
GCTTTCTAGGGAGGGGGGTGCCAGCTGGGCAGGCAGAGGGGCAAGACAAA
TGCCATGTGGGAGGATTGAGTGGTGAAAGTGAAGATAAGGAATCACAGAA
TGAAGAGACTGGGAATGTTTGGACAGGAGGGGCTGCAGCTGGGGCAGTGC
CAGGAAAAAAAAGAAAGTGGTGTGAACTCCCACTCAAGGCACTACTCCTG
GACGAGGGTGTGGAGAGGATGAGACTGATATCTCAACTGCAGTTGAATGG
GGGCAAGCGATCAGAGGGC
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