mRNA_C-tenellus_contig11278.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11278.1.1
Unique NamemRNA_C-tenellus_contig11278.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11278contigC-tenellus_contig11278:271..2383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008864251.1
Model size546
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.23e-06
EggNOG OGs2C48T@1|root,2S2VD@2759|Eukaryota
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.4978824-CDS-C-tenellus_contig11278:270..5171680789171.4978824-CDS-C-tenellus_contig11278:270..517Choristocarpus tenellus KU2346CDSC-tenellus_contig11278 271..517 +
1680789171.510991-CDS-C-tenellus_contig11278:1313..14621680789171.510991-CDS-C-tenellus_contig11278:1313..1462Choristocarpus tenellus KU2346CDSC-tenellus_contig11278 1314..1462 +
1680789171.5282142-CDS-C-tenellus_contig11278:2235..23821680789171.5282142-CDS-C-tenellus_contig11278:2235..2382Choristocarpus tenellus KU2346CDSC-tenellus_contig11278 2236..2382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11278.1.1prot_C-tenellus_contig11278.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11278 271..2382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11278.1.1

>prot_C-tenellus_contig11278.1.1 ID=prot_C-tenellus_contig11278.1.1|Name=mRNA_C-tenellus_contig11278.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=181bp
LDDLIESWHYRTVRAVWQRDKEGYCWIISDSGPFVTSTSTSRRDSQDKGV
VHNVSTSAEGSAEQCKKSCKDRRAGRTSTCSMVQSFGTSGWGRPKAMVAE
LASALGSVLTIPLVELAADLIQDAGGTWWLTQVKAFRFQVTPNGKPFPKS
EVSANKALPQPYVVDDPCFPKYSCKRKLIPF
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mRNA from alignment at C-tenellus_contig11278:271..2383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11278.1.1 ID=mRNA_C-tenellus_contig11278.1.1|Name=mRNA_C-tenellus_contig11278.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2113bp|location=Sequence derived from alignment at C-tenellus_contig11278:271..2383+ (Choristocarpus tenellus KU2346)
CTGGATGATTTAATAGAGTCTTGGCACTACAGGACCGTTCGTGCAGTTTG
GCAGAGGGACAAGGAGGGATACTGCTGGATTATCAGTGACAGTGGACCTT
TTGTTACCTCCACCTCAACAAGTCGGAGAGATTCCCAAGACAAAGGAGTA
GTCCACAATGTTTCCACTTCTGCCGAGGGCAGTGCTGAGCAATGCAAGAA
ATCTTGCAAGGATAGGAGAGCAGGACGAACCAGCACATGTAGCATGGGTA
AGACAAGATTGACCAGAATGACCAACCCTAACCCTAACCCCCCCTGGTGA
GAGGGGAAGTTCTCTGATGGGTAGTCATGAACGCCTCTGTTGGCGGCAAC
AGTGGGGGGAGTATGGAAATACATAGGGGGAGATGCTAGCCAGGGAAATG
GATGACATCTGGCACTAAGTACGATAGTTTCTCAGTCCCCTCAGCTCTAG
GCACCGGATCAATTGCTTGATAATAGTGCAAAGAAGGATGTGGAGAAGGA
TTTGCACTGCATCATTTCAAGGGCCCTAACCATTACTGATGAATGAGAGG
AAATGAGGTACTTGTGAGTGAAGGGGGAAATGGAAAAATTGGAGAAGATC
CTGATAAAAAAATTCTGGAAATAGCGTTAAAGAGATCTCTTACTTCTTCA
CCCCTCTACCTCCTTCAAAGTGGCTTCAGTCTCCTCCTCACATATTTTCC
TTCAGCCGCAGCAGGAGGCGGGCTGATATGTTCATCCCTACCCTGCTGTG
AGAGGACTGGCAATCTCAAGAGTGCTGGGTGTTGTAGCAACTTGTTGTGC
CTGGGGATGATGTCTACTCCAAAGTACACCACAAGATGATGCAAGCACTG
GAAGCCTGTGGTAGCCTGTTAAGCAATATCAGCTCTCACGTTATTGTTTT
GTTTATAACAGTCCAGTCTACTTCATCTAGTTCCTTGCCCCGGGCTCCTC
TCCAACCTGAACTTCATCTGTTCAAACCAATATCTCCAACCTCAACCAAG
TCCCTACTCCCCCTCCTGTCCTCTTCAAAATGTAATGAGCCAGTACAAAG
CTTCGGGACGTCAGGGTGGGGCAGGCCTAAGGCTATGGTGGCTGAGCTGG
CGAGTGCACTGGGATCTGTTTTGACCATCCCCCTTGTTGAACTTGCTGCA
GACCTCATTCAAGACGCAGGAGGCACTTGGTGGCTCACGCAGGTAGACAG
TGCGATAAATTAGACTATAGACGTGGTGGAGTTGATGATTTTGTTGATTT
TTAGTGGGTGAAAGCAGAGGAAGACAAGTATGCAAATTAGAGAGCAGGAG
GGGCTAGTGGTTGGATTACTTGCTAATGTGAAGCTGGCTCGGAAGGTGGA
CACCGGAGGAGGAGTGAAAAACGTAAGGCATATGGCATTCCTCATGGAGA
TGGAGTGATAGTTGAGGTGGTATTTTGTAGAGTCACAGCATGCTGCGCTA
CCACAACAAGTGGGTTTGGTCTCTTGTCTAACTGTCTGTCTGTCTGTCTG
TCTGTGTGTATGAAAACATCGAATGTAATAGCACATGCTCTTTTGAACAA
GCATGAATTCTGATAACTTTGTCTGTGATATCAATATATTAGACCACCTT
TACTATAGACACGTACCATACGGGAATAAATACACTCTACCAAAGCATGA
GAGTACCAACGTTTGACTACTGAATGGGCGTCCAGTACTAGGATACAAAA
ATTCGCAACTACCCAACCTTAACCTCTATTGACTGCCAGCATGAAAGCCT
ATACACCCATGAACCCAAATCCCCTTGCAAAGGGACAGCACACCATTTGT
GTCAACTTCAGATGCTACCTGCAAATGCTGTGAATATTTATTTATCACTG
CAGCAAACTGCAACCATGATCCCCCTCACAACTGTCATCACCCACCAAGC
TGAATGTGTACTATACCTAGTGCCAACCGCTACCTCCCACTGCCAATACT
CTCCTCCCTCCACAGGTAAAGGCTTTCCGCTTCCAGGTCACTCCAAATGG
AAAACCCTTTCCCAAGTCTGAGGTCTCAGCCAACAAGGCTCTACCACAGC
CCTATGTTGTGGATGATCCATGCTTCCCCAAATATTCCTGCAAAAGAAAG
TTGATTCCATTCC
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Coding sequence (CDS) from alignment at C-tenellus_contig11278:271..2383+

>mRNA_C-tenellus_contig11278.1.1 ID=mRNA_C-tenellus_contig11278.1.1|Name=mRNA_C-tenellus_contig11278.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=543bp|location=Sequence derived from alignment at C-tenellus_contig11278:271..2383+ (Choristocarpus tenellus KU2346)
CTGGATGATTTAATAGAGTCTTGGCACTACAGGACCGTTCGTGCAGTTTG
GCAGAGGGACAAGGAGGGATACTGCTGGATTATCAGTGACAGTGGACCTT
TTGTTACCTCCACCTCAACAAGTCGGAGAGATTCCCAAGACAAAGGAGTA
GTCCACAATGTTTCCACTTCTGCCGAGGGCAGTGCTGAGCAATGCAAGAA
ATCTTGCAAGGATAGGAGAGCAGGACGAACCAGCACATGTAGCATGGTAC
AAAGCTTCGGGACGTCAGGGTGGGGCAGGCCTAAGGCTATGGTGGCTGAG
CTGGCGAGTGCACTGGGATCTGTTTTGACCATCCCCCTTGTTGAACTTGC
TGCAGACCTCATTCAAGACGCAGGAGGCACTTGGTGGCTCACGCAGGTAA
AGGCTTTCCGCTTCCAGGTCACTCCAAATGGAAAACCCTTTCCCAAGTCT
GAGGTCTCAGCCAACAAGGCTCTACCACAGCCCTATGTTGTGGATGATCC
ATGCTTCCCCAAATATTCCTGCAAAAGAAAGTTGATTCCATTC
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