mRNA_C-tenellus_contig11270.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11270.3.1
Unique NamemRNA_C-tenellus_contig11270.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11270.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11270contigC-tenellus_contig11270:5010..5305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size262
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.3014593-CDS-C-tenellus_contig11270:5010..51891680789171.3014593-CDS-C-tenellus_contig11270:5010..5189Choristocarpus tenellus KU2346CDSC-tenellus_contig11270 5011..5189 -
1680789171.3158572-CDS-C-tenellus_contig11270:5223..53051680789171.3158572-CDS-C-tenellus_contig11270:5223..5305Choristocarpus tenellus KU2346CDSC-tenellus_contig11270 5224..5305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11270.3.1prot_C-tenellus_contig11270.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11270 5011..5305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11270.3.1

>prot_C-tenellus_contig11270.3.1 ID=prot_C-tenellus_contig11270.3.1|Name=mRNA_C-tenellus_contig11270.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=87bp
PWYRRCLVSPSSPFARLHRRSVFGVSHLIRTCSCPRPDFTRTLAAVMTAQ
PVYASCPRINNFTPFHIELVEDFCLTFLGHTTVLSGA
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mRNA from alignment at C-tenellus_contig11270:5010..5305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11270.3.1 ID=mRNA_C-tenellus_contig11270.3.1|Name=mRNA_C-tenellus_contig11270.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=296bp|location=Sequence derived from alignment at C-tenellus_contig11270:5010..5305- (Choristocarpus tenellus KU2346)
CCATGGTATAGACGTTGCCTAGTTAGTCCTTCCTCACCATTCGCACGCTT
ACATCGCCGATCTGTTTTTGGTGTATCACATTGTTATTTCACTTGACAGG
TTTCGCCGGAAATCAGTGATTCGAACATGTTCCTGCCCAAGGCCAGACTT
TACAAGAACTCTTGCAGCAGTCATGACGGCTCAACCTGTTTATGCATCAT
GTCCACGCATCAACAATTTCACCCCTTTCCACATCGAGCTCGTCGAAGAC
TTTTGCCTGACTTTCTTAGGACACACAACGGTCCTTTCAGGTGCTT
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Coding sequence (CDS) from alignment at C-tenellus_contig11270:5010..5305-

>mRNA_C-tenellus_contig11270.3.1 ID=mRNA_C-tenellus_contig11270.3.1|Name=mRNA_C-tenellus_contig11270.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=261bp|location=Sequence derived from alignment at C-tenellus_contig11270:5010..5305- (Choristocarpus tenellus KU2346)
CCATGGTATAGACGTTGCCTAGTTAGTCCTTCCTCACCATTCGCACGCTT
ACATCGCCGATCTGTTTTTGGTGTATCACATTTGATTCGAACATGTTCCT
GCCCAAGGCCAGACTTTACAAGAACTCTTGCAGCAGTCATGACGGCTCAA
CCTGTTTATGCATCATGTCCACGCATCAACAATTTCACCCCTTTCCACAT
CGAGCTCGTCGAAGACTTTTGCCTGACTTTCTTAGGACACACAACGGTCC
TTTCAGGTGCT
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