mRNA_C-tenellus_contig11265.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11265.1.1
Unique NamemRNA_C-tenellus_contig11265.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 7.060e-124
Identity = 191/261 (73.18%), Postives = 220/261 (84.29%), Query Frame = 1
Query:    1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLT-SPRARALL 780
            Y G GAILADEMGLGKT  AIALC  VLR    E +KAVV+CPSSLV NWANEFRKW PLGG AV V+QAG  AAQLV DF+IG+  RYP+L+ISYELYRNHG +INAT+GLGLL+ADEGHRLKNS   KTTRALKACPA MRL+LTGTPMQNDLDEFF++ADFVNPG+LG +KSFRSR+++PIKAAWDRDA ++  EL+ ERTRELGE++ KFVLR+TK ++  SLPAALEVV+FC PS RQLSLYE C+  S  AR+LL
Sbjct:  304 YEGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVVICPSSLVGNWANEFRKWCPLGGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYRNHGKVINATEGLGLLIADEGHRLKNSAETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFVNPGLLGSLKSFRSRYTRPIKAAWDRDANEDAAELSAERTRELGEMTEKFVLRKTKDVIRGSLPAALEVVVFCRPSARQLSLYESCIAGSAGARSLL 564          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 9.050e-117
Identity = 187/261 (71.65%), Postives = 216/261 (82.76%), Query Frame = 1
Query:    1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLT-SPRARALL 780
            Y G GAILADEMGLGKT  AIALC  VLR    E  KAVVVCPSSLVRNWANE +   P GG AV V+QAG  AAQLV DF+IG+  RYP+L+ISYELYRNHG +INAT+GLGLL+ADEGHRLKN+   KTTRALKACPA MRL+LTGTPMQNDLDEFF++ADFVNPG+LG +KSFRSR+++PIKAAWDRDA ++  EL+ ERTRELGE++ KFVLRRTK ++  SLPAALEVV+FC PS RQLSLY+ C+  S  AR+LL
Sbjct:  307 YEGRGAILADEMGLGKTATAIALCMCVLRHRRAECPKAVVVCPSSLVRNWANEVQSRGP-GGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYRNHGKVINATEGLGLLIADEGHRLKNAAETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFVNPGLLGSLKSFRSRYTRPIKAAWDRDANEDAAELSTERTRELGEMTEKFVLRRTKDVIRGSLPAALEVVVFCRPSTRQLSLYQSCIAGSAGARSLL 566          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A5A8CH06_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CH06_CAFRO)

HSP 1 Score: 233 bits (593), Expect = 8.130e-66
Identity = 135/293 (46.08%), Postives = 174/293 (59.39%), Query Frame = 1
Query:    1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETK---KAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIIN----------------ATKG--LGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSKDTGGGS 807
            + G GA+LAD MGLGKT+ AI L  + L+  LG      KAVVVCPSSLV NW  EFRKW  LG    R + V + G  A Q V DF + S    PVLI+SYE +R +  +IN                A +G  +GLLV DEGHRLKNS GN+T  AL ACP + R++LTGTP+QN LDEF++   FVNP +LG +  FR  F  PI+   D+ A  EE  +  ER++EL  +S +F+LRRT+ IL R LP+  E  +FC P+  QL LY   L    AR    ++ + GG+
Sbjct:  252 FSGAGAVLADAMGLGKTLQAITLIYTALKQSLGGAPLATKAVVVCPSSLVANWRREFRKW--LGDQKCRPIAVTKGGKEAEQAVKDFCLSSSSVSPVLIVSYEQFRRYAGLINGGAAAAGSGASTKSGAAKRGCDVGLLVCDEGHRLKNSDGNQTIAALAACPCRRRVILTGTPIQNRLDEFYACCSFVNPDVLGPLNVFRRVFQTPIQRGRDKSASPEEQAIGAERSKELSRVSTQFILRRTQRILDRYLPSKTESCVFCRPTALQLRLYRAVLAKTSARYAASARGSAGGA 542          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A812VS04_9DINO (RAD54B protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VS04_9DINO)

HSP 1 Score: 219 bits (557), Expect = 3.980e-61
Identity = 129/274 (47.08%), Postives = 165/274 (60.22%), Query Frame = 1
Query:    7 GHGAILADEMGLGKTVIAIALCNSVLRLCL---GETKKAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLD--SKDTGGG 804
            G G ILADEMGLGKT+  I L  ++L+  +   G   K ++ CPS+LV NW  EF KW  LG    +   V + G VA  +V DF  G    YPVLI+SYE+ R     + A+  +GLLV DEGHRLKNS GN+T  AL A P + ++LLTGTP+QNDL EF++M  FVNP  LGD   FR  F+KPI+   D  A   EV+LA +R  EL  ++ +FVLRRT  +L + LP   EV +F  PS  QL  Y+R L S   R +L    +  GGG
Sbjct:  667 GEGCILADEMGLGKTLQTITLVYTMLKQSVTGAGLASKVIIACPSTLVGNWKKEFGKW--LGSTRCKPAAVTKTGKVAEGVVHDFVHGRSSMYPVLILSYEMCRKFSKAL-ASARVGLLVCDEGHRLKNSSGNQTIAALAALPTRRKVLLTGTPVQNDLLEFYAMCSFVNPAELGDPTMFRRLFAKPIQDGRDTRASPAEVQLARQRADELARITSQFVLRRTNELLEKFLPPKTEVCVFVQPSQLQLEAYQRMLGSSVVRRILSRAGRAAGGG 937          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: R7QM18_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM18_CHOCR)

HSP 1 Score: 211 bits (538), Expect = 1.340e-58
Identity = 124/255 (48.63%), Postives = 168/255 (65.88%), Query Frame = 1
Query:    7 GHGAILADEMGLGKTVIAIALCNSVLRLCLGET---KKAVVVCPSSLVRNWANEFRKWSPLGG-RAVPVEQAG----VVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYER 747
            G GAILADEMGLGK++ AI L  +VL+   G     +KAV+VCP+SLV+NW NE +KW  LG  R  PV  A       + + +  F  G+  R  +LIISYE++R++   +  +K +GLLV DEGHRLK+S GNKT  ALK  P + R++LTGTP+QNDL+EFF++ DFVNPG L  + SFR+ F+ PI A+ D +A +  + +   R RELG ++ +FVLRRT  IL++ LP   EV IFC    RQ + YE+
Sbjct:  252 GQGAILADEMGLGKSLQAIGLIWTVLKQHPGGNPGVRKAVIVCPASLVQNWVNEVKKW--LGDDRLEPVAVASGSSTFESKEALAAFINGNVRR--LLIISYEMFRSYAEQMYKSK-IGLLVCDEGHRLKSSQGNKTIEALKKLPCRGRVILTGTPVQNDLEEFFAVCDFVNPGCLNSLASFRTVFANPIIASRDSNASNSAMTIGDSRARELGRITSQFVLRRTSNILAKYLPPKHEVAIFCRLQQRQQTAYEK 501          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A196SG06_BLAHN (RAD54, DNA repair and recombination protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SG06_BLAHN)

HSP 1 Score: 210 bits (534), Expect = 2.660e-58
Identity = 123/271 (45.39%), Postives = 169/271 (62.36%), Query Frame = 1
Query:    1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETK---KAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKG-ILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSKD 792
            + G+G ILADEMGLGKT+ AI+L  + L      T     AVV CPSSLV NW NEFRKW  LG    R + + + G  A + V+DF + S ++  VLIISYE+YR +   INA+K  GLLV DEGHRLK+S GN T  +L+  P+  R+LL+GTP+QND++E F+++ FVNP I   + SFR  F +PI+A   +DA + E +LA  R+ EL  ++ +F+LRRT   +L  SLP      +FC  SP Q +LYE  +   +   + +  D
Sbjct:  262 FNGNGCILADEMGLGKTLTAISLIFTALTQSPWATPLITSAVVTCPSSLVENWGNEFRKW--LGRDKVRCLILSEKGEKAEEKVNDFVMQSGLKRVVLIISYEMYRRYADKINASKA-GLLVCDEGHRLKSSSGNATIDSLRQFPSTRRVLLSGTPIQNDMEELFALSVFVNPAIFPSLASFRELFVRPIEAGRRKDASENERQLANMRSDELSRITEQFILRRTTAAVLRSSLPPKTTHFLFCGLSPEQKTLYESVIDLQKHTLVCNGGD 529          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A7L3J861_THACH (RA54B protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3J861_THACH)

HSP 1 Score: 199 bits (507), Expect = 8.730e-58
Identity = 121/263 (46.01%), Postives = 166/263 (63.12%), Query Frame = 1
Query:   13 GAILADEMGLGKTVIAIALCNSVLRL----CLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSK 789
            GAILADEMGLGKT+  IAL  ++LR     C    K+A++V P SLV+NW  EF+KW  LG   + V    V     V++F IGSP+ Y V+IISYE+       I A +   LL+ DEGHRLKNS   KTT AL +   + R++LTGTP+QNDL EF+++ +FVNPGILG + ++R  + +PI  + +  A  EE EL  +R  EL  L+G F+LRRT+ I+++ LP   E +IFC P+  QL LY + L+S   R+ L  +
Sbjct:   61 GAILADEMGLGKTLQCIALVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKW--LGSERIKVFT--VDQDHKVEEF-IGSPL-YSVMIISYEMLLRSLDQIQAIE-FNLLICDEGHRLKNS-SIKTTTALTSLSCERRIILTGTPIQNDLQEFYALIEFVNPGILGSLSTYRKIYEEPIVRSREPSATKEEKELGEKRAAELTRLTGLFILRRTQEIINKFLPPKKESIIFCRPTALQLELYRKLLSSRVIRSCLQGR 315          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: UPI000711F2D1 (DNA repair and recombination protein RAD54B n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711F2D1)

HSP 1 Score: 206 bits (523), Expect = 1.590e-57
Identity = 119/256 (46.48%), Postives = 162/256 (63.28%), Query Frame = 1
Query:    7 GHGAILADEMGLGKTVIAIALCNSVLRLCLGETK---KAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRS-LPAALEVVIFCCPSPRQLSLYERCL 753
            G+G ILADEMGLGKT+ AI+L  + L            AVV CPSSLV NW NEF KW  LG    R + +++ G  A + + +F + S ++  VLIISYE+YR     IN +K  GLL+ DEGHRLK+S GN T  +L   P+K R+LL+GTP+QND++E F++++FVNPGI   + SFR  F KPI+A   +     E ELA  R+ EL  ++ +F+LRRT  ++ RS LP  +   IFC  SP Q +LYE+ +
Sbjct:  177 GNGCILADEMGLGKTLTAISLIFTSLTQSPWSAPLITSAVVTCPSSLVDNWGNEFIKW--LGRDKVRCIVLKEKGSKAEEKIHEFVLQSSLKRVVLIISYEMYRKFADQINGSKA-GLLICDEGHRLKSSQGNATIDSLMQFPSKRRVLLSGTPIQNDMEELFALSEFVNPGIFASLTSFRQLFCKPIEAGRKKGCSQAEKELATMRSAELSRITEQFILRRTTALILRSALPPKVTSYIFCPLSPLQQTLYEQVI 429          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: UPI0005293573 (DNA repair and recombination protein RAD54B n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005293573)

HSP 1 Score: 202 bits (515), Expect = 6.580e-57
Identity = 122/263 (46.39%), Postives = 167/263 (63.50%), Query Frame = 1
Query:   13 GAILADEMGLGKTVIAIALCNSVLRL----CLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSK 789
            GAILADEMGLGKT+  IAL  ++LR     C    K+A++V P SLV+NW  EF+KW  LG   + V    V     V++F IGSP+ Y VLIISYE+       I A +   LL+ DEGHRLKNS   KTT AL +   + R++LTGTP+QNDL EF+++ +FVNPGILG + ++R  + +PI  + +  A  EE EL  +R  EL  L+G F+LRRT+ ++++ LP   E +IFC P+  QL LY + L+SP  R+ L  +
Sbjct:  165 GAILADEMGLGKTLQCIALVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKW--LGNERIKVFT--VDQDHKVEEF-IGSPL-YSVLIISYEMLLRSLDQIQAIE-FNLLICDEGHRLKNS-SIKTTTALTSLSCERRIILTGTPIQNDLQEFYALIEFVNPGILGSLSTYRKVYEEPIVKSREPSATKEEKELGEKRAVELTRLTGLFILRRTQEVINKFLPPKKESIIFCRPTALQLELYRKLLSSPVIRSCLQGR 419          
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A835ZHK9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 8.100e-57
Identity = 98/189 (51.85%), Postives = 136/189 (71.96%), Query Frame = 1
Query:  214 VVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALL 780
            V A    +DFR+GS  RY +LIISY+L+R H   INA +GLGLL+ DEGHRLK+S G KT +AL+ACPA MRL++TGTP+QN+L+EF+++A+FV PG+LGD + FRS +++PI+   D  A    V LA +RTR+L ++ G+FVLRRTKG+ + SL    E+ +FC P+ +Q  LY  CL +    +LL
Sbjct:  347 VHALPQAEDFRMGSDQRYALLIISYDLFRAHAKTINAARGLGLLICDEGHRLKSSNGTKTMKALEACPAAMRLMITGTPVQNNLEEFYALANFVYPGVLGDAREFRSMYARPIEGGRDTGANRAMVTLAEQRTRQLSQIMGRFVLRRTKGVAASSLTPKTELTVFCTPTEQQRQLYRNCLAAAGFDSLL 535          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMS0_ECTSI7.060e-12473.18SNF2-related domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JTI7_9PHAE9.050e-11771.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5A8CH06_CAFRO8.130e-6646.08Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A812VS04_9DINO3.980e-6147.08RAD54B protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
R7QM18_CHOCR1.340e-5848.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A196SG06_BLAHN2.660e-5845.39RAD54, DNA repair and recombination protein n=1 Ta... [more]
A0A7L3J861_THACH8.730e-5846.01RA54B protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
UPI000711F2D11.590e-5746.48DNA repair and recombination protein RAD54B n=1 Ta... [more]
UPI00052935736.580e-5746.39DNA repair and recombination protein RAD54B n=2 Ta... [more]
A0A835ZHK9_9STRA8.100e-5751.85SNF2 family N-terminal domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11265contigC-tenellus_contig11265:88..4966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMS0
Preferred nameRAD54B
PFAMsDUF2439,Helicase_C,SNF2_N
Model size891
Max annot lvl2759|Eukaryota
KEGG koko:K06811,ko:K10779,ko:K10875,ko:K10877
KEGG Pathwayko03440,ko05226,map03440,map05226
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000724,GO:0000725,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003724,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007135,GO:0007275,GO:0007568,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008340,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010259,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0030491,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033554,GO:0034641,GO:0035825,GO:0042221,GO:0042493,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045132,GO:0045144,GO:0046483,GO:0048285,GO:0048856,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0061982,GO:0061983,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:1903046
Exons7
Evalue1.16e-124
EggNOG OGsCOG0553@1|root,KOG0390@2759|Eukaryota
EC3.6.4.12
DescriptionDNA repair and recombination protein
Cds size891
COG categoryL
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11265.1.1prot_C-tenellus_contig11265.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11265 88..4966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.7315743-CDS-C-tenellus_contig11265:87..2461680789170.7315743-CDS-C-tenellus_contig11265:87..246Choristocarpus tenellus KU2346CDSC-tenellus_contig11265 88..246 +
1680789170.7479227-CDS-C-tenellus_contig11265:1128..12681680789170.7479227-CDS-C-tenellus_contig11265:1128..1268Choristocarpus tenellus KU2346CDSC-tenellus_contig11265 1129..1268 +
1680789170.7591493-CDS-C-tenellus_contig11265:2510..26491680789170.7591493-CDS-C-tenellus_contig11265:2510..2649Choristocarpus tenellus KU2346CDSC-tenellus_contig11265 2511..2649 +
1680789170.773432-CDS-C-tenellus_contig11265:3599..36971680789170.773432-CDS-C-tenellus_contig11265:3599..3697Choristocarpus tenellus KU2346CDSC-tenellus_contig11265 3600..3697 +
1680789170.7870078-CDS-C-tenellus_contig11265:3982..40731680789170.7870078-CDS-C-tenellus_contig11265:3982..4073Choristocarpus tenellus KU2346CDSC-tenellus_contig11265 3983..4073 +
1680789170.7977505-CDS-C-tenellus_contig11265:4558..47591680789170.7977505-CDS-C-tenellus_contig11265:4558..4759Choristocarpus tenellus KU2346CDSC-tenellus_contig11265 4559..4759 +
1680789170.8135474-CDS-C-tenellus_contig11265:4903..49661680789170.8135474-CDS-C-tenellus_contig11265:4903..4966Choristocarpus tenellus KU2346CDSC-tenellus_contig11265 4904..4966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11265.1.1

>prot_C-tenellus_contig11265.1.1 ID=prot_C-tenellus_contig11265.1.1|Name=mRNA_C-tenellus_contig11265.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=297bp
YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETKKAVVVCPSSLVRNW
ANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYR
NHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTP
MQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELA
GERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERC
LTSPRARALLDSKDTGGGSEGVRFVGEESEEEGCWDENWEEEVGDGN
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mRNA from alignment at C-tenellus_contig11265:88..4966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11265.1.1 ID=mRNA_C-tenellus_contig11265.1.1|Name=mRNA_C-tenellus_contig11265.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4879bp|location=Sequence derived from alignment at C-tenellus_contig11265:88..4966+ (Choristocarpus tenellus KU2346)
TACCCCGGCCATGGGGCCATTCTTGCTGACGAGATGGGTTTGGGCAAGAC CGTCATAGCTATTGCCCTGTGCAACAGTGTCCTACGCCTTTGCCTAGGGG AGACGAAGAAAGCGGTGGTGGTGTGCCCTTCTTCACTTGTTAGGAACTGG GCCAATGAGGTTTGAGAGAGAGAGAGAAATAAAGAGGGAGAGGGACGATA AAGTGTTAAGGGGGAGGACACTTCATTCATTTTTCCTTCCATAGCCGACC ACCTGGTCTGTTGATTGCAGCTCTCAGGAGATGCTGTCATTTTCTTGAAT AAAGTTGGTTAGCTCAAGGTATTGCTATTCTCTATGTTATCTACGGAGTG CCTGACTGTATGTATCAATGGTGCATTTATGGTCTTCCTCTTGAAACCAA TCCTGTACGATGTTATGGTGTTGTGGGTTGGAGAGTGAAGGGGTTACCTT GGATGATGGGATGCCTGAAGATAGTGTTTATATCAGTTCAAATTGAAAAG ATCCCTTCAGTGTTGCTCTGTAGAGTGGCTCATATGGAAATATTCTTCAC AGAGGTGTGGAGTACCTGCCAACAAGCTGTACACAATCTTTCGCGGGCCA TGGGTATGGAGTTGGGGATAGAGCAAGGAAGGCTGTGATTAAGTTGAGAA AGTTTTACCGTTTTGAATTTTGTTTACCATGCGATTTTCAAGTCCCTTAT TCTCCCCAAAACGCTTTCATTTTTGCTGCTTTAATAGATTGCATGTTGTA GTGTTTCTGGATGGAAGCACTTATGGGAGCCTGGCTTTGCATGTCCCTCT TGCATACCTTTAGCCTTCAGGGTATGGTCAATTTCCTAGTCCTTAGCTCT CGCAACCTTTCCAGTAAGTGTATTGTGGCATGTGTCACAGTGTCTTGCCC ATATTGATCCGTTACTAACCAGAGGACTGCGGACCCCCTTGGAAACTGAT CCATTCTACAACCTAACTAGTTGGCTTACGAGTTTTTTACATGTCCACAG TCCTTCAACCACCCCTTCCCCACAACCACCCCCATCTTCAGTTTAGGAAG TGGAGTCCCTTGGGAGGAAGAGCTGTGCCTGTTGAGCAGGCAGGAGTGGT GGCTGCCCAGCTTGTGGATGACTTCAGGATAGGGTCTCCAATGCGGTACC CTGTGCTCATTATTAGCTATGAGCTCTACAGGTTGGAGTCATAGGGAGGG GAGGGCTTATGCACAGGGATGAGACTGGGCTGTGAGAAGGGGAGGCATGA GGTCTGTGTAGGAAGGGGCATGGGGGATAATTGGGGTGGAGAGAGTCAGG ACTGAGTAAAAAATATATTAAGGTAATGTGCAAGTTTCAAATGACATTTT TTTTTTCTAGGGGAAGGGCATGGAGTCATGATAAGGGTTCAACAGCTATG AGTTGAACCTGGGCGGTATGGCAGTATGGAAGAGGGCAAATGGGTGAACC GAATATTTGGGGGGTCATACCTAACAGCTGCATTTGGTTCATCAGCTGAA GAGGCGAAAGGGGGAAGGGGGTCAAGGTGCAGGTTCAGGTGCAGGTGCAG GTGCAAGCAGGTTTGTAGTGAGAAGGTGTATGACTTGGACAAAGCAAGAA GTGTAGTGTATTGCAGCAGATGTTGAGCAGGTTAATATCAGCGCTGGAAG GTAGTGTGGAACCTACTTATTACTCTGTGAGACAGAGAGAGTTCGATGAT TCAAACCCCCAACAGTCTCCACTTTGCCTTAAGGGAAAAAACATCTCCTT ACAATAGGAATTGGATGATGCTGCTTGCCTATCAACCCCAACCCTACCTG TGTTTCCCCCAGCAGTGCTATGTGCACCTACCTTCAAGGCCAACCCCAAG CTTCCACCCCAGCCCCAGCCAATGTAAAAAAATCCCCATCTTAAGAAACA AGAGTGAGAGTTTGGAGCAATTTTCAACCTTGAGACAGCGAAAGCCTTAA GCCCTTACCGTAGATAATGATACTATTATTGCAGTATTCCCTGTCTCCAT ATTGTCCTTTTGTCCCTCTCAGTATTCGCATTCCACCTGACTTGATGTGT TCCAAGACACCAACCGTGAGCTCTGAAGGAGCAATTCTTAACCCCTATCT ATTACACAGGTTAGCTTGAACCACATCTTCTGGTTTCGAAACTGACCAAT GACCCCAATCCCCCAACCCAGTAAACCCAACAATCGTTTTGTGTGTTATC ATGATTTTTTGGTGTTTAAAAAAAAAATAAGCTCTCCCCTCCAGCAACCC CATTTCCTGTTCCAGCTCTTAACAAGAGTGGCAAATCGTCCCACGAGAAA GCCTCCTCGCAGATCACCAAACCCGATTTGAACGCCTGACAGTGGATTTG ACTCAGAAATGTTTGTTGATCACCCCTTGCCATTTTGTGCTGGACCCTCC CCCCTGAATTTGGGTATCCCCAGGAACCATGGGACCATCATCAATGCAAC CAAGGGTCTGGGACTGCTTGTGGCTGATGAAGGTCACAGGCTCAAGAACT CTGTGGGAAACAAGACCACCCGTGCTCTCAAGGCCTGCCCTGCCAAGATG CGCCTACTCCTGGTGGGTCCTGCTCCTGTATGAGACAGCAAATTGCTTCA TTTGTAGAGATGCAAAGCCTTTGCCTACCTCCTAAATGCAGAACAGACCA GTCCCATGGCGCCCCACGCCCATCATAACACCGTTGCACCACAAACAAAA CAAGTTTTTCTGTTCTGTCAAATCAGCTCAGTTCATGTTGACTCTTCAAC CTATTATTCCAATGTCCCTTGCTGTGGAATGAGTCGTTGTCCTTTCCACT CAAACAACCCTTCTCGTCCCCTTTTTCTCTTTCCTGGATGTATGTATATC ACGTACTTGATTGAATAGTTCTCTACTCCTCCTGACCCCTTAACCTTAGG GTAAGGGGTGGTATGGTCCTGGAGAGTTTCCAAGGTTGAGGGACAAGGAG AGAGTGTAAGGCAGACAAATTGTATTCACTTAAAGGGACACATGAAGTAG ACTAATCTGATTTGTTTAAATATCACCTTGGGTACTGCGAGCCTATCTTA TTGGCTAGAATTGACATGCAAAGTACGGAAGAACTATGGGGTATTTCATT GGTGCAAATGTGTTTTTTGTGCCTTGCTCCCGACTCCTGAGTCTTGTTAC GGTTTTAGTTGCCATTGTCACATCCCCCTCAACATTCACACTGGAACAGC ATAGCTCTTGCCTCAGGTTGCCTCGGGTTGCCTTGTGATTTTCGTTTTTA GCCTTGCTGTTGGACATAGTGCTTAATGTTCAACTTGATAACATGGTGCA GTTCAGTGTGGTTGCCATCGATTCCAGTTACATTTTTATTGTGCCTTGAC AACACTTACCAAGCCCCAACACATTCAACAATGTATCCACTGGACCAACC TTAGTTCACATCCAACTTGGACACATCTTAATGCAAGATAACGCAATCCA CCCCATTGCCGCACCTACCTCCATGCTTCCATATCACATCTTGACATCAT AAACTTGTGAAGACGGGCACCCCCATGCAGAACGATCTCGATGAATTCTT CTCTATGGCTGACTTCGTGAACCCTGGCATCCTTGGTGACATCAAGAGTT TCCGCTCAAGGTGTTCCCTCCTGGTGTAGTTGGGCTTGTATCCTCCCCTC TGCAGGTTACAATGCTATAGAAATTTTGGTTCTACTGTTTATTTGGGAAC ACACCTAATACACCTATATTAGTGGGTTTCTAGTTTGAACTTTTAAAACT ACAACTAAGAGGTATTTATTGCAAGGCCTTCCATTTTTAGATTCCATTTG TTTCTAGTTTATACTATAGTAGTACAAGACACACACCACACACCACCCCC TAAAGTTTGCAAGCGGGCTGTCTGCCACTGTCTGCTCACTTGCAGATTCT CCAAGCCTATTAAGGCAGCCTGGGATCGTGACGCAGAGGATGAAGAGGTT GAACTGGCAGGGGAGAGGACAAGAGAGCTGGGAGAGGTGCGTGTTCTTCT GAGTTGATTGAGCAGAGAGGGGTTAAGGGTAGGATAATGGACACAAAGAG GGAGTAGTCTTGATCCTCCATCCTAGCTTTCTTTCTCACCATATTGGGCA TTTAGAGTTGCAAGGTGTTTTTCTCTTGGGGAAATTTAGCTCCATGAAGT TGTTGCAGTGGTATGCATGTTGGGCCTTGAGGCTGTTATAATGCTCCACA CATTGTAAACTCAGTGCATAGATGGGAATATTGACATGTTGATGTACACC TCCCTCCCCTCCCCCAATAGTTCTACTGTGAACAACTTTTTCTTCTTTGT TGATGTAACCAGCAGTGAAGTATTACCCCACCCCAATCGTTTTCCCCTTC CTCTCCTCTTTCCACCATTCCTTTCCCCCCCTCACCAACATCCTAAACAA AACCACAAAATCCCACCCCCCCCGACCCTCTCTTATCCTTCCCTACATCC ACGGCTCATCCCCCAACTTAGTTGTCCGGAAAGTTTGTCCTCCGTCGGAC CAAGGGGATCCTTTCCCGCTCCCTCCCAGCCGCACTGGAAGTGGTAATCT TCTGCTGCCCTTCCCCACGCCAACTATCTCTGTACGAGCGTTGCCTCACC AGTCCGCGAGCACGTGCCCTCTTGGACAGCAAGGATACAGGGGGTGGGTC AGAGGGAGTGAGATTTGTGGGTGTGCTTCCACTGATCTCAACCCTTAGGA AGATTTGCAACCACCCTGATCTCCTGCGTCCAAGAGCGGGGTTGTGTAGC TCTGTAGCCAGGGATAGAGTGGGGGCTGACCTGGGGGCTGTGGATGAGAT GTGGAAGGACTGGGAGGAGGAATCCGAGGAGGAAGGTTGTTGGGATGAGA ATTGGGAGGAGGAGGTGGGAGATGGGAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig11265:88..4966+

>mRNA_C-tenellus_contig11265.1.1 ID=mRNA_C-tenellus_contig11265.1.1|Name=mRNA_C-tenellus_contig11265.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=891bp|location=Sequence derived from alignment at C-tenellus_contig11265:88..4966+ (Choristocarpus tenellus KU2346)
TACCCCGGCCATGGGGCCATTCTTGCTGACGAGATGGGTTTGGGCAAGAC
CGTCATAGCTATTGCCCTGTGCAACAGTGTCCTACGCCTTTGCCTAGGGG
AGACGAAGAAAGCGGTGGTGGTGTGCCCTTCTTCACTTGTTAGGAACTGG
GCCAATGAGTTTAGGAAGTGGAGTCCCTTGGGAGGAAGAGCTGTGCCTGT
TGAGCAGGCAGGAGTGGTGGCTGCCCAGCTTGTGGATGACTTCAGGATAG
GGTCTCCAATGCGGTACCCTGTGCTCATTATTAGCTATGAGCTCTACAGG
AACCATGGGACCATCATCAATGCAACCAAGGGTCTGGGACTGCTTGTGGC
TGATGAAGGTCACAGGCTCAAGAACTCTGTGGGAAACAAGACCACCCGTG
CTCTCAAGGCCTGCCCTGCCAAGATGCGCCTACTCCTGACGGGCACCCCC
ATGCAGAACGATCTCGATGAATTCTTCTCTATGGCTGACTTCGTGAACCC
TGGCATCCTTGGTGACATCAAGAGTTTCCGCTCAAGATTCTCCAAGCCTA
TTAAGGCAGCCTGGGATCGTGACGCAGAGGATGAAGAGGTTGAACTGGCA
GGGGAGAGGACAAGAGAGCTGGGAGAGTTGTCCGGAAAGTTTGTCCTCCG
TCGGACCAAGGGGATCCTTTCCCGCTCCCTCCCAGCCGCACTGGAAGTGG
TAATCTTCTGCTGCCCTTCCCCACGCCAACTATCTCTGTACGAGCGTTGC
CTCACCAGTCCGCGAGCACGTGCCCTCTTGGACAGCAAGGATACAGGGGG
TGGGTCAGAGGGAGTGAGATTTGTGGGTGAGGAATCCGAGGAGGAAGGTT
GTTGGGATGAGAATTGGGAGGAGGAGGTGGGAGATGGGAAT
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