mRNA_C-tenellus_contig11265.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI) HSP 1 Score: 388 bits (997), Expect = 7.060e-124 Identity = 191/261 (73.18%), Postives = 220/261 (84.29%), Query Frame = 1 Query: 1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLT-SPRARALL 780 Y G GAILADEMGLGKT AIALC VLR E +KAVV+CPSSLV NWANEFRKW PLGG AV V+QAG AAQLV DF+IG+ RYP+L+ISYELYRNHG +INAT+GLGLL+ADEGHRLKNS KTTRALKACPA MRL+LTGTPMQNDLDEFF++ADFVNPG+LG +KSFRSR+++PIKAAWDRDA ++ EL+ ERTRELGE++ KFVLR+TK ++ SLPAALEVV+FC PS RQLSLYE C+ S AR+LL Sbjct: 304 YEGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVVICPSSLVGNWANEFRKWCPLGGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYRNHGKVINATEGLGLLIADEGHRLKNSAETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFVNPGLLGSLKSFRSRYTRPIKAAWDRDANEDAAELSAERTRELGEMTEKFVLRKTKDVIRGSLPAALEVVVFCRPSARQLSLYESCIAGSAGARSLL 564
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE) HSP 1 Score: 370 bits (950), Expect = 9.050e-117 Identity = 187/261 (71.65%), Postives = 216/261 (82.76%), Query Frame = 1 Query: 1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLT-SPRARALL 780 Y G GAILADEMGLGKT AIALC VLR E KAVVVCPSSLVRNWANE + P GG AV V+QAG AAQLV DF+IG+ RYP+L+ISYELYRNHG +INAT+GLGLL+ADEGHRLKN+ KTTRALKACPA MRL+LTGTPMQNDLDEFF++ADFVNPG+LG +KSFRSR+++PIKAAWDRDA ++ EL+ ERTRELGE++ KFVLRRTK ++ SLPAALEVV+FC PS RQLSLY+ C+ S AR+LL Sbjct: 307 YEGRGAILADEMGLGKTATAIALCMCVLRHRRAECPKAVVVCPSSLVRNWANEVQSRGP-GGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYRNHGKVINATEGLGLLIADEGHRLKNAAETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFVNPGLLGSLKSFRSRYTRPIKAAWDRDANEDAAELSTERTRELGEMTEKFVLRRTKDVIRGSLPAALEVVVFCRPSTRQLSLYQSCIAGSAGARSLL 566
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A5A8CH06_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CH06_CAFRO) HSP 1 Score: 233 bits (593), Expect = 8.130e-66 Identity = 135/293 (46.08%), Postives = 174/293 (59.39%), Query Frame = 1 Query: 1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETK---KAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIIN----------------ATKG--LGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSKDTGGGS 807 + G GA+LAD MGLGKT+ AI L + L+ LG KAVVVCPSSLV NW EFRKW LG R + V + G A Q V DF + S PVLI+SYE +R + +IN A +G +GLLV DEGHRLKNS GN+T AL ACP + R++LTGTP+QN LDEF++ FVNP +LG + FR F PI+ D+ A EE + ER++EL +S +F+LRRT+ IL R LP+ E +FC P+ QL LY L AR ++ + GG+ Sbjct: 252 FSGAGAVLADAMGLGKTLQAITLIYTALKQSLGGAPLATKAVVVCPSSLVANWRREFRKW--LGDQKCRPIAVTKGGKEAEQAVKDFCLSSSSVSPVLIVSYEQFRRYAGLINGGAAAAGSGASTKSGAAKRGCDVGLLVCDEGHRLKNSDGNQTIAALAACPCRRRVILTGTPIQNRLDEFYACCSFVNPDVLGPLNVFRRVFQTPIQRGRDKSASPEEQAIGAERSKELSRVSTQFILRRTQRILDRYLPSKTESCVFCRPTALQLRLYRAVLAKTSARYAASARGSAGGA 542
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A812VS04_9DINO (RAD54B protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VS04_9DINO) HSP 1 Score: 219 bits (557), Expect = 3.980e-61 Identity = 129/274 (47.08%), Postives = 165/274 (60.22%), Query Frame = 1 Query: 7 GHGAILADEMGLGKTVIAIALCNSVLRLCL---GETKKAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLD--SKDTGGG 804 G G ILADEMGLGKT+ I L ++L+ + G K ++ CPS+LV NW EF KW LG + V + G VA +V DF G YPVLI+SYE+ R + A+ +GLLV DEGHRLKNS GN+T AL A P + ++LLTGTP+QNDL EF++M FVNP LGD FR F+KPI+ D A EV+LA +R EL ++ +FVLRRT +L + LP EV +F PS QL Y+R L S R +L + GGG Sbjct: 667 GEGCILADEMGLGKTLQTITLVYTMLKQSVTGAGLASKVIIACPSTLVGNWKKEFGKW--LGSTRCKPAAVTKTGKVAEGVVHDFVHGRSSMYPVLILSYEMCRKFSKAL-ASARVGLLVCDEGHRLKNSSGNQTIAALAALPTRRKVLLTGTPVQNDLLEFYAMCSFVNPAELGDPTMFRRLFAKPIQDGRDTRASPAEVQLARQRADELARITSQFVLRRTNELLEKFLPPKTEVCVFVQPSQLQLEAYQRMLGSSVVRRILSRAGRAAGGG 937
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: R7QM18_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM18_CHOCR) HSP 1 Score: 211 bits (538), Expect = 1.340e-58 Identity = 124/255 (48.63%), Postives = 168/255 (65.88%), Query Frame = 1 Query: 7 GHGAILADEMGLGKTVIAIALCNSVLRLCLGET---KKAVVVCPSSLVRNWANEFRKWSPLGG-RAVPVEQAG----VVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYER 747 G GAILADEMGLGK++ AI L +VL+ G +KAV+VCP+SLV+NW NE +KW LG R PV A + + + F G+ R +LIISYE++R++ + +K +GLLV DEGHRLK+S GNKT ALK P + R++LTGTP+QNDL+EFF++ DFVNPG L + SFR+ F+ PI A+ D +A + + + R RELG ++ +FVLRRT IL++ LP EV IFC RQ + YE+ Sbjct: 252 GQGAILADEMGLGKSLQAIGLIWTVLKQHPGGNPGVRKAVIVCPASLVQNWVNEVKKW--LGDDRLEPVAVASGSSTFESKEALAAFINGNVRR--LLIISYEMFRSYAEQMYKSK-IGLLVCDEGHRLKSSQGNKTIEALKKLPCRGRVILTGTPVQNDLEEFFAVCDFVNPGCLNSLASFRTVFANPIIASRDSNASNSAMTIGDSRARELGRITSQFVLRRTSNILAKYLPPKHEVAIFCRLQQRQQTAYEK 501
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A196SG06_BLAHN (RAD54, DNA repair and recombination protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SG06_BLAHN) HSP 1 Score: 210 bits (534), Expect = 2.660e-58 Identity = 123/271 (45.39%), Postives = 169/271 (62.36%), Query Frame = 1 Query: 1 YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETK---KAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKG-ILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSKD 792 + G+G ILADEMGLGKT+ AI+L + L T AVV CPSSLV NW NEFRKW LG R + + + G A + V+DF + S ++ VLIISYE+YR + INA+K GLLV DEGHRLK+S GN T +L+ P+ R+LL+GTP+QND++E F+++ FVNP I + SFR F +PI+A +DA + E +LA R+ EL ++ +F+LRRT +L SLP +FC SP Q +LYE + + + + D Sbjct: 262 FNGNGCILADEMGLGKTLTAISLIFTALTQSPWATPLITSAVVTCPSSLVENWGNEFRKW--LGRDKVRCLILSEKGEKAEEKVNDFVMQSGLKRVVLIISYEMYRRYADKINASKA-GLLVCDEGHRLKSSSGNATIDSLRQFPSTRRVLLSGTPIQNDMEELFALSVFVNPAIFPSLASFRELFVRPIEAGRRKDASENERQLANMRSDELSRITEQFILRRTTAAVLRSSLPPKTTHFLFCGLSPEQKTLYESVIDLQKHTLVCNGGD 529
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A7L3J861_THACH (RA54B protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3J861_THACH) HSP 1 Score: 199 bits (507), Expect = 8.730e-58 Identity = 121/263 (46.01%), Postives = 166/263 (63.12%), Query Frame = 1 Query: 13 GAILADEMGLGKTVIAIALCNSVLRL----CLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSK 789 GAILADEMGLGKT+ IAL ++LR C K+A++V P SLV+NW EF+KW LG + V V V++F IGSP+ Y V+IISYE+ I A + LL+ DEGHRLKNS KTT AL + + R++LTGTP+QNDL EF+++ +FVNPGILG + ++R + +PI + + A EE EL +R EL L+G F+LRRT+ I+++ LP E +IFC P+ QL LY + L+S R+ L + Sbjct: 61 GAILADEMGLGKTLQCIALVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKW--LGSERIKVFT--VDQDHKVEEF-IGSPL-YSVMIISYEMLLRSLDQIQAIE-FNLLICDEGHRLKNS-SIKTTTALTSLSCERRIILTGTPIQNDLQEFYALIEFVNPGILGSLSTYRKIYEEPIVRSREPSATKEEKELGEKRAAELTRLTGLFILRRTQEIINKFLPPKKESIIFCRPTALQLELYRKLLSSRVIRSCLQGR 315
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: UPI000711F2D1 (DNA repair and recombination protein RAD54B n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711F2D1) HSP 1 Score: 206 bits (523), Expect = 1.590e-57 Identity = 119/256 (46.48%), Postives = 162/256 (63.28%), Query Frame = 1 Query: 7 GHGAILADEMGLGKTVIAIALCNSVLRLCLGETK---KAVVVCPSSLVRNWANEFRKWSPLGG---RAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRS-LPAALEVVIFCCPSPRQLSLYERCL 753 G+G ILADEMGLGKT+ AI+L + L AVV CPSSLV NW NEF KW LG R + +++ G A + + +F + S ++ VLIISYE+YR IN +K GLL+ DEGHRLK+S GN T +L P+K R+LL+GTP+QND++E F++++FVNPGI + SFR F KPI+A + E ELA R+ EL ++ +F+LRRT ++ RS LP + IFC SP Q +LYE+ + Sbjct: 177 GNGCILADEMGLGKTLTAISLIFTSLTQSPWSAPLITSAVVTCPSSLVDNWGNEFIKW--LGRDKVRCIVLKEKGSKAEEKIHEFVLQSSLKRVVLIISYEMYRKFADQINGSKA-GLLICDEGHRLKSSQGNATIDSLMQFPSKRRVLLSGTPIQNDMEELFALSEFVNPGIFASLTSFRQLFCKPIEAGRKKGCSQAEKELATMRSAELSRITEQFILRRTTALILRSALPPKVTSYIFCPLSPLQQTLYEQVI 429
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: UPI0005293573 (DNA repair and recombination protein RAD54B n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005293573) HSP 1 Score: 202 bits (515), Expect = 6.580e-57 Identity = 122/263 (46.39%), Postives = 167/263 (63.50%), Query Frame = 1 Query: 13 GAILADEMGLGKTVIAIALCNSVLRL----CLGETKKAVVVCPSSLVRNWANEFRKWSPLGGRAVPVEQAGVVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALLDSK 789 GAILADEMGLGKT+ IAL ++LR C K+A++V P SLV+NW EF+KW LG + V V V++F IGSP+ Y VLIISYE+ I A + LL+ DEGHRLKNS KTT AL + + R++LTGTP+QNDL EF+++ +FVNPGILG + ++R + +PI + + A EE EL +R EL L+G F+LRRT+ ++++ LP E +IFC P+ QL LY + L+SP R+ L + Sbjct: 165 GAILADEMGLGKTLQCIALVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKW--LGNERIKVFT--VDQDHKVEEF-IGSPL-YSVLIISYEMLLRSLDQIQAIE-FNLLICDEGHRLKNS-SIKTTTALTSLSCERRIILTGTPIQNDLQEFYALIEFVNPGILGSLSTYRKVYEEPIVKSREPSATKEEKELGEKRAVELTRLTGLFILRRTQEVINKFLPPKKESIIFCRPTALQLELYRKLLSSPVIRSCLQGR 419
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Match: A0A835ZHK9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK9_9STRA) HSP 1 Score: 204 bits (520), Expect = 8.100e-57 Identity = 98/189 (51.85%), Postives = 136/189 (71.96%), Query Frame = 1 Query: 214 VVAAQLVDDFRIGSPMRYPVLIISYELYRNHGTIINATKGLGLLVADEGHRLKNSVGNKTTRALKACPAKMRLLLTGTPMQNDLDEFFSMADFVNPGILGDIKSFRSRFSKPIKAAWDRDAEDEEVELAGERTRELGELSGKFVLRRTKGILSRSLPAALEVVIFCCPSPRQLSLYERCLTSPRARALL 780 V A +DFR+GS RY +LIISY+L+R H INA +GLGLL+ DEGHRLK+S G KT +AL+ACPA MRL++TGTP+QN+L+EF+++A+FV PG+LGD + FRS +++PI+ D A V LA +RTR+L ++ G+FVLRRTKG+ + SL E+ +FC P+ +Q LY CL + +LL Sbjct: 347 VHALPQAEDFRMGSDQRYALLIISYDLFRAHAKTINAARGLGLLICDEGHRLKSSNGTKTMKALEACPAAMRLMITGTPVQNNLEEFYALANFVYPGVLGDAREFRSMYARPIEGGRDTGANRAMVTLAEQRTRQLSQIMGRFVLRRTKGVAASSLTPKTELTVFCTPTEQQRQLYRNCLAAAGFDSLL 535 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11265.1.1 >prot_C-tenellus_contig11265.1.1 ID=prot_C-tenellus_contig11265.1.1|Name=mRNA_C-tenellus_contig11265.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=297bp YPGHGAILADEMGLGKTVIAIALCNSVLRLCLGETKKAVVVCPSSLVRNWback to top mRNA from alignment at C-tenellus_contig11265:88..4966+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11265.1.1 ID=mRNA_C-tenellus_contig11265.1.1|Name=mRNA_C-tenellus_contig11265.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4879bp|location=Sequence derived from alignment at C-tenellus_contig11265:88..4966+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11265:88..4966+ >mRNA_C-tenellus_contig11265.1.1 ID=mRNA_C-tenellus_contig11265.1.1|Name=mRNA_C-tenellus_contig11265.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=891bp|location=Sequence derived from alignment at C-tenellus_contig11265:88..4966+ (Choristocarpus tenellus KU2346)back to top |