mRNA_C-tenellus_contig11260.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11260.3.1
Unique NamemRNA_C-tenellus_contig11260.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: A0A8J2WSX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSX8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 8.420e-16
Identity = 39/62 (62.90%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    7 GNDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQNGPESSPKHSISRCNGRCVQRAGT 192
            GNDP AGS TETLLRLHLPLN EL  ++            PE SP HSI RC+GRCVQRAGT
Sbjct:   41 GNDPSAGSPTETLLRLHLPLNSELACSN------------PEISPNHSIGRCDGRCVQRAGT 90          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: F0XYK3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYK3_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 2.060e-15
Identity = 40/63 (63.49%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 IGNDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQNGPESSPKHSISRCNGRCVQRAGT 192
            I NDP AGS TETLLRLHLPLN EL   S            PE SP HSI RC+GRCVQRAGT
Sbjct:   34 ISNDPSAGSPTETLLRLHLPLNSELANPS------------PEVSPNHSIGRCDGRCVQRAGT 84          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: F0XYG7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYG7_AURAN)

HSP 1 Score: 71.2 bits (173), Expect = 8.360e-15
Identity = 39/61 (63.93%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   10 NDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQNGPESSPKHSISRCNGRCVQRAGT 192
            NDP AGS TETLLRLHLPLN EL   S            PE SP HSI RC+GRCVQRAGT
Sbjct:   36 NDPSAGSPTETLLRLHLPLNSELANPS------------PEVSPNHSIGRCDGRCVQRAGT 84          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: A0A6N2KFT6_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KFT6_SALVM)

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   10 NDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQN-GPESSPKHSISRCNGRCVQRAGT 192
            NDP AGS TETLLRL LPLN ++  TS  VA+ +PP+   P +SP HSI R +GRCVQRAGT
Sbjct: 1237 NDPSAGSPTETLLRLLLPLNDKVQWTSRDVASGEPPRRRDPNTSPDHSIGRSDGRCVQRAGT 1298          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: A0A6A1WDF0_9ROSI (Uncharacterized protein n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WDF0_9ROSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.800e-13
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   10 NDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQN-GPESSPKHSISRCNGRCVQRAGT 192
            NDP AGS TETLLRL LPLN ++  TS  VAA   P    P +SP HSI R +GRCVQRAGT
Sbjct:  492 NDPSAGSPTETLLRLLLPLNDKVQWTSQNVAAANRPHRLDPNTSPDHSIGRSDGRCVQRAGT 553          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: A0A2G2V2R3_CAPBA (Protein TAR1 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V2R3_CAPBA)

HSP 1 Score: 68.9 bits (167), Expect = 3.890e-12
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   10 NDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPP------------QNGPESSPKHSISRCNGRCVQRAGT 192
            NDPFAGS TETLLRL L LN +L  TS  VA  +PP            +  P  SP HSI R +GRCVQRAGT
Sbjct:  311 NDPFAGSPTETLLRLLLSLNDKLQWTSRDVAGSEPPTXATSRAANRPRRRDPNISPDHSIGRSDGRCVQRAGT 383          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: R1BK99_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BK99_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 4.450e-12
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    7 GNDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQNGPESSPKHSISRCNGRCVQRAGT 192
            GNDP AGS TETL RL LPLN ++   S G+      +  P +SP HSI R +GRCVQRAGT
Sbjct:   41 GNDPSAGSPTETLSRLLLPLNDKVRTASRGLR-----RRSPGASPDHSIGRSDGRCVQRAGT 97          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: A0A8K0GTJ8_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0GTJ8_9ROSA)

HSP 1 Score: 67.8 bits (164), Expect = 5.690e-12
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   10 NDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQ-NGPESSPKHSISRCNGRCVQRAGT 192
            NDP AGS TETLLRL LPLN ++  TS  VA  +PP      +SP HSI R +GRCVQRAGT
Sbjct:  208 NDPSAGSPTETLLRLLLPLNDKVQWTSCDVAGSEPPTPTQSNTSPDHSIGRSDGRCVQRAGT 269          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: A0A507BW73_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BW73_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 1.200e-11
Identity = 37/64 (57.81%), Postives = 39/64 (60.94%), Query Frame = -2
Query:    3 YVPALCTHRPLHLLIECFGEDSGPFCGGFTAATPWEVISSSIFRGR*SRNKVSVNEPAKGSLPI 194
            YVPALCTHRP  L IE   E SG     FTA    EV  +  FRG  SRNKV+V EPA GSL I
Sbjct:   31 YVPALCTHRPSLLPIEWLSETSGLSYWCFTALVFREVGQTWSFRGSKSRNKVTVGEPAVGSLHI 94          
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Match: A0A6N2K376_SALVM (Uncharacterized protein (Fragment) n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K376_SALVM)

HSP 1 Score: 65.9 bits (159), Expect = 5.060e-11
Identity = 35/60 (58.33%), Postives = 38/60 (63.33%), Query Frame = 2
Query:    5 SVMILLQVH*RKPCYDFTFL*ILNLI*LPTGWQP*SPRKTDRNLHQNIQSVGAMGGVYKG 184
            S MIL QVH RKPCYDF+ L    L  L T      PR+  R LH+ IQSVGA GGVYKG
Sbjct: 1194 STMILPQVHLRKPCYDFSSLMFSGL--LATSPAANRPRRAIRTLHRTIQSVGATGGVYKG 1251          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11260.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2WSX8_9STRA8.420e-1662.90Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
F0XYK3_AURAN2.060e-1563.49Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0XYG7_AURAN8.360e-1563.93Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6N2KFT6_SALVM1.400e-1362.90Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A6A1WDF0_9ROSI4.800e-1362.90Uncharacterized protein n=1 Tax=Morella rubra TaxI... [more]
A0A2G2V2R3_CAPBA3.890e-1254.79Protein TAR1 n=1 Tax=Capsicum baccatum TaxID=33114... [more]
R1BK99_EMIHU4.450e-1256.45Uncharacterized protein (Fragment) n=3 Tax=Emilian... [more]
A0A8K0GTJ8_9ROSA5.690e-1261.29Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A507BW73_9FUNG1.200e-1157.81Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A6N2K376_SALVM5.060e-1158.33Uncharacterized protein (Fragment) n=1 Tax=Salix v... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11260contigC-tenellus_contig11260:4750..4944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009033216.1
Model size195
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.38e-16
EggNOG OGs2CZCW@1|root,2S9RN@2759|Eukaryota
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.631531-CDS-C-tenellus_contig11260:4749..49441680789170.631531-CDS-C-tenellus_contig11260:4749..4944Choristocarpus tenellus KU2346CDSC-tenellus_contig11260 4750..4944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11260.3.1prot_C-tenellus_contig11260.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11260 4750..4944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11260.3.1

>prot_C-tenellus_contig11260.3.1 ID=prot_C-tenellus_contig11260.3.1|Name=mRNA_C-tenellus_contig11260.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=65bp
MIGNDPFAGSLTETLLRLHLPLNIELDITSHGVAAVKPPQNGPESSPKHS
ISRCNGRCVQRAGT*
back to top

mRNA from alignment at C-tenellus_contig11260:4750..4944+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11260.3.1 ID=mRNA_C-tenellus_contig11260.3.1|Name=mRNA_C-tenellus_contig11260.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=195bp|location=Sequence derived from alignment at C-tenellus_contig11260:4750..4944+ (Choristocarpus tenellus KU2346)
ATGATCGGTAATGATCCTTTTGCAGGTTCATTGACGGAAACCTTGTTACG ACTTCACCTTCCTCTAAATATTGAACTTGATATAACTTCCCACGGGGTGG CAGCCGTGAAGCCCCCGCAAAACGGACCGGAATCTTCACCAAAACATTCA ATCAGTAGGTGCAATGGGCGGTGTGTACAAAGGGCAGGAACGTAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11260:4750..4944+

>mRNA_C-tenellus_contig11260.3.1 ID=mRNA_C-tenellus_contig11260.3.1|Name=mRNA_C-tenellus_contig11260.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=195bp|location=Sequence derived from alignment at C-tenellus_contig11260:4750..4944+ (Choristocarpus tenellus KU2346)
ATGATCGGTAATGATCCTTTTGCAGGTTCATTGACGGAAACCTTGTTACG
ACTTCACCTTCCTCTAAATATTGAACTTGATATAACTTCCCACGGGGTGG
CAGCCGTGAAGCCCCCGCAAAACGGACCGGAATCTTCACCAAAACATTCA
ATCAGTAGGTGCAATGGGCGGTGTGTACAAAGGGCAGGAACGTAA
back to top