mRNA_C-tenellus_contig1126.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1126.5.1
Unique NamemRNA_C-tenellus_contig1126.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: D7G1U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U8_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.600e-42
Identity = 73/105 (69.52%), Postives = 83/105 (79.05%), Query Frame = 1
Query:   40 SANGTGEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            +  G GEVTL YEMYDEKFPI+DGSI+AA ID+ YCLSF MPNCTLHLG L P+D YA E EG  + YL E+P+GTF GLE G  YWVYVS+D EEE +DRERMK
Sbjct:  224 TGRGDGEVTLMYEMYDEKFPIKDGSISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDDEEEKQDRERMK 328          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A1V9YWC1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWC1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.510e-29
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   55 GEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            G V LKYEMYDE FPI DGS T AAIDD+Y L+F MPNC +HL  L P    A+EA GV + Y+ E P GT+  LE G TY+VYV Q+AE+ A+D+ +M+
Sbjct:  132 GNVILKYEMYDEAFPIVDGSTTMAAIDDVYALTFVMPNCLVHLSRLDPPSKVAAEASGVDV-YIKELPEGTYQDLEAGETYYVYVEQEAEQLARDQAKMR 230          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: T0R6Z3_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R6Z3_SAPDV)

HSP 1 Score: 107 bits (267), Expect = 5.410e-26
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   55 GEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            G + LKYEMY E+FPI DGS T AAIDD+Y L+F MPNC +HL    P      E+      Y+ EDP GT+  LE G TY+VYV Q+AE+ AKD+ +M+
Sbjct:  136 GNIILKYEMYCEEFPIIDGSTTMAAIDDVYALTFVMPNCLVHLSTYDPPTKIEIESRDPTAVYVREDPIGTYQDLEAGATYYVYVEQEAEQLAKDQAKMR 235          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A067D9L5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D9L5_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 6.650e-26
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   40 SANGTGEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            +A   G V LKYEMY E+FPI +GS T AAIDD+Y L+F MPNC +HL    P      E+      Y+ EDP GT+  LE G TY+VY  Q+AE+ AKD+ +M+
Sbjct:  107 AAKRNGTVILKYEMYSEEFPIVEGSTTMAAIDDVYALTFVMPNCLIHLSRWDPPTKVEMESRDAMNVYVREDPIGTYQDLEAGETYYVYAEQEAEQLAKDQAKMR 211          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A1V9ZX09_9STRA (Lysosomal Cystine Transporter (LCT) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX09_9STRA)

HSP 1 Score: 107 bits (268), Expect = 7.630e-25
Identity = 56/117 (47.86%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    4 ISAMEEPRETTSSANGTGEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            +S+ +E  +     N  G V LKYEMY+E FPI +GS T A IDDIY L+F MPNC +HL    P+   A E+ G    Y+ EDP GT+  LE   TY+VYV Q+ E+ AKD+E+M+
Sbjct:  404 VSSSDEVVKAEIIKNQNGNVVLKYEMYEELFPIVNGSTTMANIDDIYALTFVMPNCLVHLSKYDPTTKLAMESTGNLDLYVKEDPVGTYQELEADCTYYVYVEQEGEQLAKDQEKMR 520          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A7S4SJU9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SJU9_9DINO)

HSP 1 Score: 102 bits (254), Expect = 2.280e-24
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   40 SANGTGEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            +A   GEVT+KY MY EKF IE+ ++TAAA+D++YCLS  MP C +HLG       Y  E       Y+ EDP G+F GL  G TYW YV QD E+E +D+E MK
Sbjct:   96 AALANGEVTIKYSMYAEKFKIENHTLTAAAVDELYCLSDIMPGCFIHLG--EKEFGYGEEHA-----YIKEDPPGSFRGLMSGETYWCYVQQDPEQEKRDQEAMK 193          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A813IAW0_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IAW0_POLGL)

HSP 1 Score: 102 bits (253), Expect = 2.770e-24
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   55 GEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            GEVT+KY MYDEKF +E+  + A  ID++YCLS  MP C +HLG       +A   E V   Y+ EDP GTF GL  G TYW YV QD+E+E KD+E M+
Sbjct:   96 GEVTIKYNMYDEKFKVENHMLKAEVIDELYCLSDVMPGCFIHLG----EKQFAYGEEQV---YVKEDPPGTFKGLMAGETYWCYVQQDSEQENKDQEAMR 188          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A2D4BJT7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJT7_PYTIN)

HSP 1 Score: 99.0 bits (245), Expect = 1.550e-23
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   46 NGTGEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            NG G V L YE YDE FPIEDGS T A IDD+YCLSF MPNC +HL +    + +  E  GV    + E+P G + GL    TY+V V Q+A++  +D+E+ K
Sbjct:   58 NGNGMVKLIYEQYDELFPIEDGSTTQANIDDVYCLSFVMPNCLVHLSHHPNVERFERENAGVFDSLVLENPRGVYQGLVKDTTYYVVVEQEADQLKRDQEKAK 160          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A6G0W707_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W707_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.320e-23
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   52 TGEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEG-VGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRERMK 354
            TG V LKYEMY E F IE GS+T  AID+ YCLSF MPNC +HL    P+   A E++G     +LHE+P GT+ GL+   TY+VY+ Q+A++ A D+  M+
Sbjct:  341 TGNVVLKYEMYSESFVIEKGSMTGTAIDEAYCLSFVMPNCRIHLSMHEPAMKLALESQGDTDNVFLHEEPPGTYHGLQVDQTYYVYIEQEADQLAWDQAHMR 442          
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Match: A0A813LJX8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LJX8_POLGL)

HSP 1 Score: 99.4 bits (246), Expect = 4.100e-23
Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   55 GEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAMPNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVSQDAEEEAKDRE 345
            GEV+L+Y MY+E+FPI  G  TA AID++Y L+  MP C +HL  LSP + Y ++A+ + + Y+ E+PAG F GL+  G Y+VYV +D  E  K +E
Sbjct:  100 GEVSLRYSMYNERFPITGGQTTAKAIDEVYALTDIMPGCCIHLSSLSPEEKYRADADRLPVPYMFENPAGHFHGLQADGVYFVYVEEDDAEFLKSQE 196          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1126.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U8_ECTSI5.600e-4269.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9YWC1_9STRA7.510e-2957.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0R6Z3_SAPDV5.410e-2652.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067D9L5_SAPPC6.650e-2649.52Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9ZX09_9STRA7.630e-2547.86Lysosomal Cystine Transporter (LCT) Family n=1 Tax... [more]
A0A7S4SJU9_9DINO2.280e-2450.48Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A813IAW0_POLGL2.770e-2452.00Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A2D4BJT7_PYTIN1.550e-2348.54Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6G0W707_9STRA2.320e-2350.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A813LJX8_POLGL4.100e-2347.42Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1126contigC-tenellus_contig1126:13187..14122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1U8
Model size354
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.84e-43
EggNOG OGs2B80G@1|root,2S0QQ@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004050.1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.567757-UTR-C-tenellus_contig1126:13186..131981680789170.567757-UTR-C-tenellus_contig1126:13186..13198Choristocarpus tenellus KU2346UTRC-tenellus_contig1126 13187..13198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.577849-CDS-C-tenellus_contig1126:13198..132911680789170.577849-CDS-C-tenellus_contig1126:13198..13291Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 13199..13291 +
1680789170.5886226-CDS-C-tenellus_contig1126:13578..137231680789170.5886226-CDS-C-tenellus_contig1126:13578..13723Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 13579..13723 +
1680789170.6014285-CDS-C-tenellus_contig1126:14018..141221680789170.6014285-CDS-C-tenellus_contig1126:14018..14122Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 14019..14122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1126.5.1prot_C-tenellus_contig1126.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1126 13199..14122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1126.5.1

>prot_C-tenellus_contig1126.5.1 ID=prot_C-tenellus_contig1126.5.1|Name=mRNA_C-tenellus_contig1126.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=114bp
MEEPRETTSSANGTGEVTLKYEMYDEKFPIEDGSITAAAIDDIYCLSFAM
PNCTLHLGYLSPSDHYASEAEGVGMHYLHEDPAGTFCGLEGGGTYWVYVS
QDAEEEAKDRERMK
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mRNA from alignment at C-tenellus_contig1126:13187..14122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1126.5.1 ID=mRNA_C-tenellus_contig1126.5.1|Name=mRNA_C-tenellus_contig1126.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=936bp|location=Sequence derived from alignment at C-tenellus_contig1126:13187..14122+ (Choristocarpus tenellus KU2346)
GAAATATCCGCCATGGAGGAGCCTAGGGAGACAACATCCAGTGCCAATGG GACAGGAGAGGTTACTCTCAAGTACGAAATGTACGATGAGAAGTTTCCGA TTGAGGTGTGTCCAATAGTGAGCCAGCTGGAGATCTGGTATAGATGAAAA ATGCTTCACTGAAGTAGATGCAACTACATACATGCCATCGAAAACCGCAT TCTTCTGGTGTATATCTATGTGTGACACATCTAACACACCCATAAACAGC CTCACTCCCCTTCCCTATCAACGAACACCTCTGTTCCACCTATGACTCAA TTTCATCTCCTATCATCTCTTATCATCTATTGCCACCTATTTTATCGATC CCCACGTCTCTTCCCCTTGACCCTCTATCCCTTTATTTCAAGGATGGCTC CATCACTGCTGCTGCAATAGACGACATATATTGCCTGAGCTTTGCAATGC CTAACTGCACGCTGCATCTAGGATACCTGAGTCCCTCTGATCACTATGCT TCAGAAGCTGAAGGAGTGGGTATGCACTACCTACATGGTACGCATTCCAT TCATGCAATAGCTGCTGTGACGGTGAACAACTGAAATGAATCTCACAAAA CTTCCGATGTAGTCCATTCTGGGATTGGAGTGGATTGGATGTGGGGGTAG TTCAAGGGATTGATTTGTTTTGATACACAGAAAACCAATCTTACACGATT TATTTCAAGGCTGCAGCATTGACCTAAGCCCTATCCTCCAGCCCTCAACC TCGACCCCCTTCTCACCATTGAATCCTAATGCAAAACCTTACCGGTGGAG AGTGTCTCATCCCCGACTGTTGTTTCGTGCAGAGGACCCAGCAGGGACAT TCTGCGGTTTGGAAGGGGGTGGCACATATTGGGTGTACGTGTCCCAGGAT GCAGAAGAAGAGGCCAAAGATCGTGAGAGAATGAAA
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Coding sequence (CDS) from alignment at C-tenellus_contig1126:13187..14122+

>mRNA_C-tenellus_contig1126.5.1 ID=mRNA_C-tenellus_contig1126.5.1|Name=mRNA_C-tenellus_contig1126.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=342bp|location=Sequence derived from alignment at C-tenellus_contig1126:13187..14122+ (Choristocarpus tenellus KU2346)
ATGGAGGAGCCTAGGGAGACAACATCCAGTGCCAATGGGACAGGAGAGGT
TACTCTCAAGTACGAAATGTACGATGAGAAGTTTCCGATTGAGGATGGCT
CCATCACTGCTGCTGCAATAGACGACATATATTGCCTGAGCTTTGCAATG
CCTAACTGCACGCTGCATCTAGGATACCTGAGTCCCTCTGATCACTATGC
TTCAGAAGCTGAAGGAGTGGGTATGCACTACCTACATGAGGACCCAGCAG
GGACATTCTGCGGTTTGGAAGGGGGTGGCACATATTGGGTGTACGTGTCC
CAGGATGCAGAAGAAGAGGCCAAAGATCGTGAGAGAATGAAA
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