mRNA_C-tenellus_contig1126.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1126.4.1
Unique NamemRNA_C-tenellus_contig1126.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 6.460e-60
Identity = 87/103 (84.47%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 MGEEVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            MGE VPDW  MWGAKVKMP DM DDMLRDAI TCRD L+ C DFEAEG LAAAE IKKHFD++WDP+WHVIIGRNFGSFVTHETTCFVYFYL DKAIMMYKAG
Sbjct:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEG-LAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 102
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.300e-50
Identity = 72/97 (74.23%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:   19 DWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            DW MMWGAKVK+P+DM DD+L+DAI+T R+VL+KC+DFEAEG LA+AE IK+H D +WDP+WHV+IGRNFGSFVTHET  F+YFY+GDKA+MMYKAG
Sbjct:    7 DWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEG-LASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKAG 102
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.180e-44
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:    1 MGE-EVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            MG+ E+ +W+ MWGA+VK+P DM DDML+DA+ T R V E+  DFE +G L AAE IK  FD KW PNWHV++GR FGSFVTHET CFVYFYL DKA+MMYKAG
Sbjct:    1 MGDGEIQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDG-LKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKAG 103
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.900e-43
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 MGEEVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            MGEEVP+W MMWGAKVK P+D+ DDML+DAI T + ++ +  DFEAEG +  AE IK+ FD +W P WHVIIG+NFGSFVTHET  F+YFY  DKA+M+YKAG
Sbjct:    1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEG-VDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKAG 102
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA)

HSP 1 Score: 126 bits (317), Expect = 8.100e-36
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 MGEEVP-DWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            MGE  P +W  MWGAKVK P D+ DDML DAI   R  LE   D+E+EG  A  + +KK FD KW P+WH ++G NFGSFVTHE   FVYFY+ DKA++++KAG
Sbjct:    1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGD-AVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKAG 103
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.390e-35
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 MGEEVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            MGEEV +W  +WGAKVK P++M DD+L+DAI T  + L  C +FE+ G LA  + IK H D KW P+W   IGRNFGS V+HET  FV+FY  DKA+M+YK G
Sbjct:    3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAV-QNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYKIG 104
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM)

HSP 1 Score: 120 bits (301), Expect = 2.210e-33
Identity = 60/101 (59.41%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   10 EVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAE-GGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            E P W  MWGAKVKMP DM DD+L DAI      L K +  E E  GLA  E IK H D  WDP+W V IGRNFGSFVTH T  FV+FY  +KA+M+YKAG
Sbjct:    3 EAPSWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVTRNFVFFYYNEKAVMIYKAG 103
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.650e-32
Identity = 58/101 (57.43%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   10 EVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEG-GLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            E P+W  MWGAKVKMP DM DD+L DAI      L K +  E E  GL   E IK H D  W+P+W V IGRNFGS+VTH T  FVYFY  +KA+M+YKAG
Sbjct:    3 EAPNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVTRNFVYFYFNEKAVMVYKAG 103
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BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: K3WRF9_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRF9_GLOUD)

HSP 1 Score: 115 bits (287), Expect = 2.980e-31
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:   10 EVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEG-GLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMYKAG 309
            E P W  MWGAKVKMP DM DD+L D I      L K +  E E  GLA  E +K H D+ W+P+W V IGRNFGS+VTH T  FV+FY  +KAIM+YKAG
Sbjct:    3 EAPSWQYMWGAKVKMPCDMEDDVLEDVIKHVTTRLAKFDTEEWEKKGLAVCEELKAHMDTLWEPHWVVCIGRNFGSYVTHVTRNFVFFYYNEKAIMVYKAG 103
[Close]
BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Match: A0A7R9U0Z2_9STRA (Dynein light chain (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0Z2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.490e-31
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 MGEEVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGLAAAETIKKHFDSKWDPNWHVIIGRNFGSFVT 243
            M EE+ DW+ MWGA+V+ P DM DDML+DAI T R +L++C DF+A+G L AAE IK  FD KW PNWHV++GR FGS+VT
Sbjct:   26 MSEEIQDWSTMWGARVRQPCDMTDDMLKDAIETTRSILDECPDFDADG-LKAAEMIKYSFDKKWTPNWHVVVGRGFGSYVT 105
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1126.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V9_ECTSI6.460e-6084.47Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CJA1_9STRA1.300e-5074.23Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1TPD3_9STRA1.180e-4466.35Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S2W886_9STRA1.900e-4365.05Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1CI82_9STRA8.100e-3656.73Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
A0A7S2WLS4_9STRA3.390e-3556.31Dynein light chain n=1 Tax=Eucampia antarctica Tax... [more]
H3GHN7_PHYRM2.210e-3359.41Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A5D6XID8_9STRA3.650e-3257.43Dynein light chain n=1 Tax=Pythium brassicum TaxID... [more]
K3WRF9_GLOUD2.980e-3156.44Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
A0A7R9U0Z2_9STRA4.490e-3161.73Dynein light chain (Fragment) n=1 Tax=Pinguiococcu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1126contigC-tenellus_contig1126:4950..7522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1V9
PFAMsDynein_light
Model size312
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.06e-60
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-07_003930.1
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size312
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.5106418-CDS-C-tenellus_contig1126:4949..50941680789170.5106418-CDS-C-tenellus_contig1126:4949..5094Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 4950..5094 +
1680789170.522757-CDS-C-tenellus_contig1126:6213..63221680789170.522757-CDS-C-tenellus_contig1126:6213..6322Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 6214..6322 +
1680789170.5352395-CDS-C-tenellus_contig1126:7464..75221680789170.5352395-CDS-C-tenellus_contig1126:7464..7522Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 7465..7522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1126.4.1prot_C-tenellus_contig1126.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1126 4950..7522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1126.4.1

>prot_C-tenellus_contig1126.4.1 ID=prot_C-tenellus_contig1126.4.1|Name=mRNA_C-tenellus_contig1126.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MGEEVPDWTMMWGAKVKMPIDMNDDMLRDAINTCRDVLEKCNDFEAEGGL
AAAETIKKHFDSKWDPNWHVIIGRNFGSFVTHETTCFVYFYLGDKAIMMY
KAG*
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mRNA from alignment at C-tenellus_contig1126:4950..7522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1126.4.1 ID=mRNA_C-tenellus_contig1126.4.1|Name=mRNA_C-tenellus_contig1126.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2573bp|location=Sequence derived from alignment at C-tenellus_contig1126:4950..7522+ (Choristocarpus tenellus KU2346)
ATGGGGGAAGAGGTGCCTGATTGGACCATGATGTGGGGAGCAAAAGTCAA
GATGCCCATAGATATGAACGATGATATGCTGCGGGACGCGATCAATACTT
GCAGGGATGTGTTGGAAAAGTGCAATGACTTCGAGGCTGAAGGTGGTCTT
ACAATTGGCTGTAAACATGCAATCTGCTGCTTCGTGTATAGTAGGCAAGA
TACTACTTTGATCGGAGCCAGGATTAAAGATCAACAACCTGTTTTCGTAT
TTAAAGGACTATGATCAAGGACACACTTACAGTACATCGCTAGTTACGGA
CTTGTAAATATAGGTATGTAACTAGACTATGCTGATTGTGTAGCATTCGG
ACAATGTCGCTATGAGAACGAATCTCTCTTGGTTATCTCAAAGCTCATCA
TTTTTTAGTTATCTTGGAGAAAATATTGAGCCAAAGTATCTTAGAGGGTA
CGGCTGCGTCCATTTGGGGGTCAAAATCCAATGTTGCGATTTGATGTAAT
TTTGGCTATGATATTTACTAGGAAGTGTCAATATCCTTGTTCCGGACACA
CCTTTTCATAAAGTACACATTTTCCTATTCCAAACCTTTTTGGAGTAGGA
AAATGTCATAAAAAAACACATGGCAAGCCAAGCCCCAAATGGACAAACAG
GGCAAAACTCGTACCCTCTAAGATACTTTCACTCATTGCTTCATCGATCT
TTCATACAGTCCTTGCACCCCAATTTGTTTGAGAATACCATCAGGTGGAA
CCAATTCTCGTCGAAAGAAAATTATATCTAAATGTCACCACTGCTCTAAG
CCTTACCGTGGTACGGAGTCTAGTCATATGTACACTTGGAGATTAATCTC
AAGCTGGATATCTTTTATAAATATTTCCTATAAAGCATCAACCATCACTG
GATGTTGTGGACATTATCTCTTCTCATTTTCTACACTCAGATAATGTCTT
TTTTTTCCAATCTGGGTCAGGTGGAAGAGACAGAAAGTCAACAGAGATCA
GTAAGAATGTGTGAGGTTTTTCTTGATCCCATTCACCATTTCCGTCTGTA
GGTTTTGCTCCTGACTTGCGACAGCTTGTACGACAGTGTATTGGAGAAAT
ATATGTGTTTACAGTGTCTTCTCTATTCGAGAGTATACTTAGCAGCTACA
GTGTCTTGACTGCCATGCGGGGTGTTGATCCACTTCCGTACACCTCCAAT
CCAAATACCTGTACTACAATCTGATGTGAAGTTGCCTAAATTCTTGTTTC
TCACTTGGATCCAGGGCTTGCAGCAGCTGAGACAATCAAGAAGCACTTCG
ATTCTAAGTGGGACCCGAACTGGCATGTCATTATTGGACGAAACTTTGGG
TCCTTTGTTACACACGAGACAACGTGAGCTTGAAAAAAGTTTTTATATTG
TCAACTTGACAGGGAAGGAGGTTGGATGGAGTTGAGTGAGGGAGTATATG
TAGAAACAGTGTTGTACCTCAGCAACCTTTCCAGCAGTGACCAGAACTGC
AAAGTTATGGATGCTGCCATTATGCAGTAGGACAAAATGATTTCAAGTAG
TATCCTGTAGATATATGCTGTTCTCTAAGAAAATGTGTTGGCCTGGTACA
TTAAATTCAATCCATTGCTTGGTCTTCCACGATAAAGACCATGGAATGTG
TCCCTTAGGTTTCCCTCAGGTATTACATTTTTTTAGATATTTCCACAGAG
AATAGTACACTATAAGTCTCACTCAACAGAATGAATCTTTGGTGGTCAAA
TCATTCTTGATTCCCTTTTCTGAGTAGTCCTTTGACAAAAAGAGTAGAAC
TGTGACAAAAGCTGCTTGTAGAATATCTTCTGTCAAATACTTCGAGGTAA
GAGTCAAGTTTTGAAGGAAGAGCTGTGTGGGGTTATATGTATCCGCAAAT
ACGTCCACACTATCATGAAGAGTTGGAAATGTCAGCGTGTTTGCCGACAA
CCACCAGAAAAAATTGGAAAAGAACTATACATCCACCATAAAGATACAAC
CGTTGACAATGAGTTTTACTTATGACTGTAGAAGATCCTCACAAAATATT
CTCACCAACTAATTTTTGTCTAACCACTCTACCATCCCACCAGCCAAACT
AACACTTTGCCACAACATTCTTCACAGTTCTAATCAAGTCAGATAGGGTC
CTCAGTCTAGAATTGAAGCTTGAATGCCCTCACTGTGTGCCAAGAGAGGG
GGTCATCCTCCATCTCTTGCAATAGTCTGAATGGCATCGGCATTACTGAT
TTTCCATTCCTCAGTGAAACTGGGCATGACTGCGAACTCTAGGACTTGAG
CAGATAATCAATTACCTTTCTGAACTTCAACAGCCATTTTCCTACTTTCA
TTGAGTACCCACATCAATCAATCTCCGGAAGCATGACTGATGGAGGCTAC
ACTGCACCCATTCGTCTTCTGTGCCATCCCTCTGTACTTGCCCAAGCCCT
GTTCAGCATCATTGAACTTTGAGGTCTGATCGGCTTTGCGTCTTTCTTCC
CCACTTCTCACTCAGGTGTTTTGTATATTTTTATCTTGGGGATAAGGCCA
TCATGATGTACAAGGCCGGGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig1126:4950..7522+

>mRNA_C-tenellus_contig1126.4.1 ID=mRNA_C-tenellus_contig1126.4.1|Name=mRNA_C-tenellus_contig1126.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig1126:4950..7522+ (Choristocarpus tenellus KU2346)
ATGGGGGAAGAGGTGCCTGATTGGACCATGATGTGGGGAGCAAAAGTCAA
GATGCCCATAGATATGAACGATGATATGCTGCGGGACGCGATCAATACTT
GCAGGGATGTGTTGGAAAAGTGCAATGACTTCGAGGCTGAAGGTGGGCTT
GCAGCAGCTGAGACAATCAAGAAGCACTTCGATTCTAAGTGGGACCCGAA
CTGGCATGTCATTATTGGACGAAACTTTGGGTCCTTTGTTACACACGAGA
CAACGTGTTTTGTATATTTTTATCTTGGGGATAAGGCCATCATGATGTAC
AAGGCCGGGTAA
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