mRNA_C-tenellus_contig1126.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1126.1.1
Unique NamemRNA_C-tenellus_contig1126.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A7S3KF90_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KF90_EUPCR)

HSP 1 Score: 83.6 bits (205), Expect = 7.730e-17
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   25 FGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASRYGPV 375
            FG+ G+ R+ R MD++G  +LD    + GL +FG       I      + Q+ K  DR+G G I   EFL+ L+G + + R +++  A+D LDV KDG +++D ++KLY AS++  V
Sbjct:  115 FGIRGLGRIFRAMDDNGNRQLDIDDFRWGLIDFG-------ITITKEEAAQLLKHIDRDGSGTIDFDEFLRFLRGDLNDFRKNLINQAYDKLDVNKDGLVKLDDIEKLYDASQHPDV 224          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A7S1NLK1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NLK1_9EUGL)

HSP 1 Score: 75.9 bits (185), Expect = 1.610e-13
Identity = 42/125 (33.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    1 QQITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASRYGPV 375
            +++ S G   + G+   +R+MDE+  G L   ++++GL+ +G  ++ D         ++V  FFDR+  G+IS  EFL+GL+GPM  RR  +V+ A+  LD   DG   ++ + KLY  S++  V
Sbjct:  503 KKLFSRGGQSMRGLTLSIRVMDENKNGELSKEEMKKGLQRYG-LELTDH------ELMEVLNFFDRDNSGSISITEFLRGLRGPMVNRRKDLVKQAYALLDTNSDGEATINEIGKLYDVSQHPQV 620          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A8J2WX70_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX70_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.460e-12
Identity = 40/124 (32.26%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    4 QITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASRYGPV 375
            Q+ S G  G+ G+ R  R+ D+   G+L   +  + + E G  ++             +F  FDR+G G++S  EFL  ++GP+ + R  I+ AAFD LD+ KDG I  D +   + AS++  V
Sbjct: 1205 QLASHGARGIAGLGRKFRICDDDNDGKLSHSEFNKAINELGLAELT------AQERRVLFDHFDRDGSGSLSYEEFLSNVRGPLSQPRIDIIDAAFDILDLDKDGSILPDEIASRFDASQHPDV 1322          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A7S3U6A8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6A8_9SPIT)

HSP 1 Score: 68.9 bits (167), Expect = 1.460e-12
Identity = 36/121 (29.75%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    1 QQITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASR 363
            + +   G   + G+ RV +++D++   ++D  +L  GL++F        I      +  + + FDR+G G ++  EFL  L+G + E R   +RAA+  LDV KDG + ++ + KLY  S+
Sbjct:    7 ETLKKRGAMAIRGIARVFKILDDNRNRQIDLNELMWGLKDFD-------IHLDEEQAKVLLQRFDRDGSGTVNFNEFLVALRGDLNEHRLKYIRAAYQKLDVNKDGTVTLEDIAKLYDVSQ 120          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A7S4FM76_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FM76_9EUGL)

HSP 1 Score: 70.1 bits (170), Expect = 1.070e-11
Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 QQITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASRYGPV 375
            +++ S G   + G+ R L++MD +    L   +L+ GL+++G       +        +V  FFDR+  G IS  EF++G++GPM  RR  +V  A+  +D   DG + ++ + +LY  S++  V
Sbjct:  172 KKLFSRGGISMRGLNRCLKVMDTNKNLSLSESELKTGLQKYG-------LDLTDHELKEVVDFFDRDNSGTISLTEFMRGIRGPMNNRRRKLVEQAYALIDTNGDGEVSLEEIGRLYDVSQHPDV 289          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A812RDL7_9DINO (Calmodulin (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RDL7_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 1.550e-11
Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 1
Query:    7 ITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKAS 360
            + + G   LG + R  +  D +G  +LD  +    LR  G F     + A       VF+ FD +G GA++  EFL+G++GPM ERR ++ +  FD +D    G + ++ LK  Y  S
Sbjct:   39 MATRGMGSLGNLGRAFKRTDWNGNKKLDRDEFDDALRSVGVFLKSQELSA-------VFRAFDMDGSGAVNYDEFLRGMKGPMNERRMAMTKRCFDYMDKDGSGQLTIEDLKLYYTPS 149          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A1R2BPK7_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BPK7_9CILI)

HSP 1 Score: 68.6 bits (166), Expect = 5.380e-11
Identity = 38/119 (31.93%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   19 GKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASRYGPV 375
            G +G+ G+ +V + MD++G   LD    + GL  +G +   + I         + K FDRNGDG ++  EFL  ++G + + R  +V  A++ LD   DG + +D + K+Y AS++  V
Sbjct:  315 GAYGIRGLAKVFKNMDDNGNRLLDPEDFKWGLYNYGIYLNENDIKT-------LIKTFDRNGDGFVNFDEFLTTIKGKLNDNRLRLVALAYEKLDKNGDGQVTLDDIAKIYDASKHPEV 426          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A6G0WBJ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBJ6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.420e-10
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 1
Query:    7 ITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFG---GFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASR 363
            +   G  GL  VRR++R+ DE G G+L   +L++ L ++G     Q  D           +   FD + +G I   E   GL+G M ++R  +V+ AF  LDV   G I +D L++ Y  SR
Sbjct:  370 VARGGALGLHSVRRLMRICDEDGDGKLSKVELKKALAQYGVSINLQEVD----------HLLTLFDTDRNGTICFDELFVGLRGSMNDKRQILVKEAFKKLDVHGQGHITIDDLRRQYDTSR 481          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A7I8W030_9ANNE (DgyrCDS8702 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W030_9ANNE)

HSP 1 Score: 58.5 bits (140), Expect = 5.470e-8
Identity = 33/118 (27.97%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   22 KFGLGGVR---RVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKASRY 366
            K G+ G+R   R  R+ D+ G+  L   +  +G+ ++G       +        ++F +FD++  G IS  EF++ ++  M + R  ++  AF  LDVT DG I ++ LK+ Y+  ++
Sbjct:   17 KRGVNGIRSLSRTFRIYDDDGSKYLSREEFGKGIHDYG-------VNISEGDITEMFSYFDKDKSGHISVNEFIEKIRPNMSDGRIKLIEKAFQKLDVTGDGVITIEDLKRQYEYKKH 127          
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Match: A0A812VBF6_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VBF6_SYMMI)

HSP 1 Score: 57.8 bits (138), Expect = 3.100e-7
Identity = 37/118 (31.36%), Postives = 56/118 (47.46%), Query Frame = 1
Query:    7 ITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPICAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDALDVTKDGFIRMDHLKKLYKAS 360
            I   G  G+ G+ R+LR+MD++G  RL   +L  GLR++G       I        Q+F +FDR+ +G I   EFL G++G + +RR S+                  D L  +Y  S
Sbjct:  151 IARGGTNGIKGLGRLLRIMDDNGDKRLSRDELIYGLRDYG-------ISVTKTEIEQLFLYFDRDHNGFIDIDEFLIGIRGDLNDRRKSLXXXXXXXXXXXXXXXXXXDELAAVYDVS 261          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1126.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7S3KF90_EUPCR7.730e-1736.75Hypothetical protein n=1 Tax=Euplotes crassus TaxI... [more]
A0A7S1NLK1_9EUGL1.610e-1333.60Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8J2WX70_9STRA1.460e-1232.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3U6A8_9SPIT1.460e-1229.75Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4FM76_9EUGL1.070e-1129.60Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A812RDL7_9DINO1.550e-1132.20Calmodulin (Fragment) n=1 Tax=Symbiodinium sp. KB8... [more]
A0A1R2BPK7_9CILI5.380e-1131.93Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A6G0WBJ6_9STRA1.420e-1032.79Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7I8W030_9ANNE5.470e-827.97DgyrCDS8702 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A812VBF6_SYMMI3.100e-731.36Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1126contigC-tenellus_contig1126:28..914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000013330
PFAMsABC_membrane,ABC_tran
Model size375
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.47e-17
EggNOG OGsCOG1132@1|root,KOG0032@1|root,KOG0032@2759|Eukaryota,KOG0054@2759|Eukaryota,1MFKC@121069|Pythiales
DescriptionATP-binding Cassette (ABC) Superfamily. Source PGD
Cds size375
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.4705346-CDS-C-tenellus_contig1126:27..2761680789170.4705346-CDS-C-tenellus_contig1126:27..276Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 28..276 -
1680789170.4809918-CDS-C-tenellus_contig1126:788..9141680789170.4809918-CDS-C-tenellus_contig1126:788..914Choristocarpus tenellus KU2346CDSC-tenellus_contig1126 789..914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1126.1.1prot_C-tenellus_contig1126.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1126 28..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1126.1.1

>prot_C-tenellus_contig1126.1.1 ID=prot_C-tenellus_contig1126.1.1|Name=mRNA_C-tenellus_contig1126.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp
QQITSAGKFGLGGVRRVLRMMDESGAGRLDSCKLQQGLREFGGFQVCDPI
CAPPLSSLQVFKFFDRNGDGAISSREFLKGLQGPMGERRSSIVRAAFDAL
DVTKDGFIRMDHLKKLYKASRYGPV
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mRNA from alignment at C-tenellus_contig1126:28..914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1126.1.1 ID=mRNA_C-tenellus_contig1126.1.1|Name=mRNA_C-tenellus_contig1126.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=887bp|location=Sequence derived from alignment at C-tenellus_contig1126:28..914- (Choristocarpus tenellus KU2346)
CAACAGATCACAAGTGCTGGCAAGTTTGGGCTAGGGGGTGTGCGGCGCGT GTTGCGAATGATGGATGAGTCTGGGGCTGGGCGGCTAGATTCCTGTAAGC TCCAGCAGGGGTTGAGGGAGTTTGGTGTCCATGTATCGGATGATGAAATG AAAAAGGCAAGTAACGGTTTTTAAGTGGAGGAAGAAATGCTTAAGAGTCT ATGTACTCTCAAGTTGTCCACAGTAGAGCTATAGTGTTATATTTATTTGT ACCATAGTAATGGTGTGTTTTAGGCAACAAGAGTGAGCTCTGTTGCTTGA GCGTAAGCAAGGTCAAATCCCTCATATGTGTCTGTGCACTAGTTGATGCA AGCATAAATCACGGTCTCTTGACACTGAATACAAGTAAGAGCTCTGTTTA GGATTGATGAGTTCAATCTGGTGTTGGGATGGTGGCTATCCTTCTGAGAA AAAGTCTTCGTCACGTCACTGAAATCATTGATCAAAGTGCATTATTTCAG CTCAGTGTCATAGTCTCAGTTGAGTTTTCATAATCTCAAACCTCATATCC AAATGTTGCAATGCACAACCTGGTGGACATACCCTCAATAGAAACAACCT TGTGTCTTTGATAGCACAATCTTTTTCGTCTGACAAAGGGTTTCCAAGTA TGTGATCCCATATGTGCCCCACCTCTCTCCTCTCTGCAGGTCTTCAAGTT CTTTGATAGGAATGGAGATGGAGCGATTAGTTCGCGTGAGTTCCTTAAGG GACTCCAGGGCCCTATGGGTGAACGAAGGAGTTCAATTGTTCGGGCAGCA TTTGATGCCCTAGACGTCACCAAGGATGGGTTCATCAGAATGGATCATCT GAAGAAGCTGTACAAAGCTAGCAGGTATGGCCCTGTT
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Coding sequence (CDS) from alignment at C-tenellus_contig1126:28..914-

>mRNA_C-tenellus_contig1126.1.1 ID=mRNA_C-tenellus_contig1126.1.1|Name=mRNA_C-tenellus_contig1126.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=375bp|location=Sequence derived from alignment at C-tenellus_contig1126:28..914- (Choristocarpus tenellus KU2346)
CAACAGATCACAAGTGCTGGCAAGTTTGGGCTAGGGGGTGTGCGGCGCGT
GTTGCGAATGATGGATGAGTCTGGGGCTGGGCGGCTAGATTCCTGTAAGC
TCCAGCAGGGGTTGAGGGAGTTTGGTGGTTTCCAAGTATGTGATCCCATA
TGTGCCCCACCTCTCTCCTCTCTGCAGGTCTTCAAGTTCTTTGATAGGAA
TGGAGATGGAGCGATTAGTTCGCGTGAGTTCCTTAAGGGACTCCAGGGCC
CTATGGGTGAACGAAGGAGTTCAATTGTTCGGGCAGCATTTGATGCCCTA
GACGTCACCAAGGATGGGTTCATCAGAATGGATCATCTGAAGAAGCTGTA
CAAAGCTAGCAGGTATGGCCCTGTT
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