mRNA_C-tenellus_contig11257.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11257.2.1
Unique NamemRNA_C-tenellus_contig11257.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A835ZH90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH90_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.260e-47
Identity = 80/172 (46.51%), Postives = 110/172 (63.95%), Query Frame = 3
Query:  459 ISPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAV--LMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYWP 968
            ++P   L+  LA RGYPT    AL   Y T PT    + Y ++ V  +   D+  LR +  AG +MNACNKF ES++HMA R G  E++ FM++   V  L + DD GRTPLHDACW ++P+F++V  +LD   +M+ VKD+RGFTPL YV++E W  W  F++ IKD YWP
Sbjct:    2 VNPHEFLIATLAARGYPTRTVVALESRYATKPTAKQVEDYSIDLVNAVRAGDLDTLREMHAAGCSMNACNKFAESVVHMAARIGAREVMEFMIECTGVESLAISDDYGRTPLHDACWTSEPFFDMVTFILDHEVEMLLVKDKRGFTPLLYVKKELWGAWHTFIDAIKDKYWP 173          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A7S2DD81_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD81_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.070e-44
Identity = 79/169 (46.75%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  459 ISPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYW 965
            +S +  L  IL ERGY T+  P  SP YV  PTE     YDM+FV  +   D+  +  + + G ++NACNKFGES++H+A RRG  +++  +V +GA L + DD GRTP+HDACW  +P F++V ++L+R+ +++RV D+RG TPLSYVR E +  WC FL+  KDV+W
Sbjct:  134 LSVDEFLNVILKERGYETKRMP--SP-YVCKPTEKQVHDYDMDFVAAVRASDVKTISKMLDRGHHVNACNKFGESIIHIACRRGNFKVLEQLVSHGATLSISDDYGRTPMHDACWNAEPCFDVVALLLNRDLELLRVLDKRGATPLSYVRPEHYAIWCAFLDYQKDVWW 299          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.150e-42
Identity = 74/172 (43.02%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  450 CTRISPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYW 965
            C + +P+  +  +L  RGY T   P+L   + TVPT    + YD+ FV  I   +   ++S  + GR+MNACNK+GES++HMA RRG+ ++V FMV+ G +L + DD GRTPLHDACW  +P  ++V  +L++N  ++ + D+RGF+PL+YVRRE +  W  F + +KD +W
Sbjct:  278 CDKKNPDQFVDSLLVSRGYETTRIPSLQTEFRTVPTPKQIQDYDLAFVDAIRTSNYAAIQSFYDEGRSMNACNKYGESVMHMACRRGDGKLVSFMVELGGLLEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWW 449          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: W7TFS2_9STRA (Ankyrin repeat-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFS2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 4.860e-42
Identity = 78/168 (46.43%), Postives = 107/168 (63.69%), Query Frame = 3
Query:  462 SPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYW 965
            SP+  L  IL ERGY T    A + A+   PT      YD+  V  +   D+  LR +  AGR M+ACN+FGES++H++ RRG+ E +RF+++NG  + +CDD GRTPLHDACW   P F+ V  ++D++  +IRV D RG TPLSY+RRE W EW  F +  K+ YW
Sbjct:  186 SPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYW 353          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: B7G9J4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9J4_PHATC)

HSP 1 Score: 163 bits (413), Expect = 3.010e-40
Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  459 ISPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYWP 968
            ISP+  L  ++A RGY TE F  L  AY   PT     +YD+  + ++ K  +  LR++ ++G + N CN FGESLLHM  RRG++++++ +++ G  L V DD GRTPLHDACW  +P F +V ++L+R+  ++ + D RG  PLSYVR+E W EW  +LE  K  YWP
Sbjct:  159 ISPQSYLDDMIAARGYSTEKFKTLQTAYYNKPTALQQASYDVYLIDLVKKNGVETLRNIFKSGVSPNPCNTFGESLLHMICRRGDVDLLKVLLECGTNLQVADDYGRTPLHDACWAAKPAFAVVDLILERDPRLLYMSDCRGALPLSYVRKEHWCEWVPYLEARKHTYWP 328          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A836C8T3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T3_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.970e-39
Identity = 70/170 (41.18%), Postives = 101/170 (59.41%), Query Frame = 3
Query:  459 ISPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYWP 968
            + PE VL  IL ERGY T+  P L   +   P     ++YD   V  +   D+  LR+++ AG  M ACN+FGES+LH A+R G +++V F++++GA    CDD GRT LH A W   P F++  ++L+ +  ++R  D+RG +PL YVR E W  WC F    K +YWP
Sbjct:    1 VHPETVLHGILQERGYSTQTAPTLETPFHRPPQPHQVESYDNALVGAVRGGDLAALRAMRAAGHTMTACNRFGESVLHTAVRHGSVDVVAFLLESGAHAGTCDDCGRTALHFALWTPAPRFDVATLLLNTDVRLLRCLDKRGASPLQYVRPEHWPLWCRFFHAKKHLYWP 170          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A6H5JNI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.960e-39
Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 3
Query:  462 SPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYWPH 971
            SP+  L  IL ERGY +    + S      PT+     Y +  V  + + DM  L +L   G +M A N+FGES++H+A RRG   ++RF++ +G  L +CDD G+TPLHDA W  +P FELV ++L+ +  ++R  D RG TPL Y + E W  WC FL+ +KD  WPH
Sbjct:   97 SPQAYLEAILLERGYDSTPRSSASDGCRCTPTQKQLDDYQVPLVEAVRRWDMGALEALAADGVDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEMDWGLLRATDVRGATPLRYAKNEHWASWCEFLDRVKDHLWPH 266          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A7S1BAZ7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BAZ7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 6.460e-39
Identity = 74/176 (42.05%), Postives = 105/176 (59.66%), Query Frame = 3
Query:  444 QRCTRISPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYWPH 971
            Q+ T  SP+  L ++L  RGY T+ +  L+  Y   PT     +Y +  V+ +   D + L      G + N CNKFGESL+HM  RR E   +  +++ G  + V DD GRTPLHDACW ++P F  V I+L+ +R ++ + DRRG  PLSY RRE W +W  FL++ KD+YWPH
Sbjct:   36 QKLTPQSPQDFLNKLLKIRGYSTDTYLTLNTGYYCKPTSLQVASYGVGIVQTVRDSDPICLGKFLSKGLSPNPCNKFGESLVHMVCRRREHACLATLIKFGCSIQVSDDFGRTPLHDACWTSEPCFTTVEILLNIDRRLLSLADRRGSLPLSYARREHWGKWINFLDKKKDLYWPH 211          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A836CA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA41_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.090e-38
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  576 YDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQ--NGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYWP 968
            Y M  +  + + D+  LR L   G  MNACNKF ESL+HMA R G   ++ F++       L +CDD GRTPLHDACW T+P F+LV  +LD +  M+ V DRRG+TPLSYV+R+ W  W  F++ +KD YWP
Sbjct:    4 YTMATINAVRQADLDALRMLHAEGHGMNACNKFAESLVHMAGRSGNCAVMEFLIDCTGPEGLTICDDYGRTPLHDACWATEPCFDLVSFILDHDSSMLMVVDRRGYTPLSYVKRDQWGAWHAFIDAVKDKYWP 136          
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Match: A0A7S0SWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWK6_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.840e-36
Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = 3
Query:  447 RCTRISPEMVLVRILAERGYPTEAFPALSPAYVTVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHMAMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLDRNRDMIRVKDRRGFTPLSYVRRESWVEWCCF 938
            R T I P+  L+R+L+ RGY     PA+  +Y   P+E     Y  + +  I   D+  L++L + G +M+ACN++ ES++HMA RR +  +V F+++NG    + DD GRTPLHDACW   P F++V ++LD +  ++R+ D RG  PL YVR+E W +WC +
Sbjct:  143 RVTPIPPDQFLLRLLSCRGYDYNLIPAVQSSYYKAPSEKQINDYTNDLINAIRYSDLSKLKALVDQGYSMSACNRYSESIVHMACRRSDPAVVDFLLKNGGDYYITDDFGRTPLHDACWRLDPRFDIVTMLLDNDLTLLRLADIRGSIPLCYVRQEHWAKWCAY 306          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11257.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH90_9STRA2.260e-4746.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DD81_9STRA4.070e-4446.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RMJ8_9STRA4.150e-4243.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TFS2_9STRA4.860e-4246.43Ankyrin repeat-containing protein n=3 Tax=Monodops... [more]
B7G9J4_PHATC3.010e-4044.12Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A836C8T3_9STRA3.970e-3941.18Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5JNI0_9PHAE5.960e-3941.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1BAZ7_9STRA6.460e-3942.05Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A836CA41_9STRA1.090e-3848.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0SWK6_9STRA1.840e-3640.24Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11257contigC-tenellus_contig11257:1366..3532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr39760
PFAMsAnk_2
Model size1965
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.6e-44
EggNOG OGs2C0FJ@1|root,2S48R@2759|Eukaryota,2XCZU@2836|Bacillariophyta
Descriptionankyrin repeats
Cds size975
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.407311-UTR-C-tenellus_contig11257:1365..22601680789170.407311-UTR-C-tenellus_contig11257:1365..2260Choristocarpus tenellus KU2346UTRC-tenellus_contig11257 1366..2260 -
1680789170.4381301-UTR-C-tenellus_contig11257:3437..35321680789170.4381301-UTR-C-tenellus_contig11257:3437..3532Choristocarpus tenellus KU2346UTRC-tenellus_contig11257 3438..3532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.416963-CDS-C-tenellus_contig11257:2260..27461680789170.416963-CDS-C-tenellus_contig11257:2260..2746Choristocarpus tenellus KU2346CDSC-tenellus_contig11257 2261..2746 -
1680789170.4290187-CDS-C-tenellus_contig11257:2948..34371680789170.4290187-CDS-C-tenellus_contig11257:2948..3437Choristocarpus tenellus KU2346CDSC-tenellus_contig11257 2949..3437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11257.2.1prot_C-tenellus_contig11257.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11257 2261..3437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11257.2.1

>prot_C-tenellus_contig11257.2.1 ID=prot_C-tenellus_contig11257.2.1|Name=mRNA_C-tenellus_contig11257.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=325bp
MSSYWDHQEESPPAEPSSDQVVEAKAQLSTVTPGVSPKLSLGARYVQGRA
PSEVHAVTDTQDSDPSKIASEVSEELRKTVLSNEVADTRKGDKNLGNDSI
GEDATSNEQVVGKGEGQRCTRISPEMVLVRILAERGYPTEAFPALSPAYV
TVPTEDMTKAYDMEFVRVIHKRDMVLLRSLKEAGRNMNACNKFGESLLHM
AMRRGEIEIVRFMVQNGAVLMVCDDQGRTPLHDACWGTQPYFELVRIVLD
RNRDMIRVKDRRGFTPLSYVRRESWVEWCCFLEEIKDVYWPHQLCQKEVD
QPEGEAERTASPQDPPDCEATPEG*
back to top

mRNA from alignment at C-tenellus_contig11257:1366..3532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11257.2.1 ID=mRNA_C-tenellus_contig11257.2.1|Name=mRNA_C-tenellus_contig11257.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2167bp|location=Sequence derived from alignment at C-tenellus_contig11257:1366..3532- (Choristocarpus tenellus KU2346)
GTATTGGTTAGGACGAGCAGTTCTGGTGGGCGACCCAGCACCCACCTACT TTTTTGCTGACGTGACATTTCTCTACATTGTAGGTGTGTGGGTAGATGAG CTCGTACTGGGATCACCAGGAAGAATCCCCGCCTGCAGAGCCTAGTAGTG ACCAAGTAGTCGAAGCCAAGGCACAGTTGTCGACAGTAACTCCAGGTGTT TCCCCAAAGCTCTCCTTGGGTGCCCGTTATGTGCAAGGTCGTGCCCCAAG CGAGGTGCATGCTGTGACTGATACTCAAGACTCTGACCCCTCCAAGATTG CGTCAGAAGTGAGTGAGGAATTGAGGAAAACTGTACTTTCAAACGAAGTG GCGGACACAAGAAAAGGTGACAAGAACTTGGGAAATGACTCCATCGGTGA AGATGCAACTAGTAATGAGCAAGTGGTTGGAAAAGGAGAAGGACAGAGAT GCACGCGAATAAGCCCTGAGATGGTTTTGGTCAGAATACTTGCCGAAAGA GGTTACCCAACAGAGGCATTTCCTGCCCTAAGTCCGGCATACGTGACAGT CCCGACGGAGGATATGACCAAGGCTTACGACATGGTGAGTGTCAGGCGTA GTGGAGAAATTATGACAGTTGACAGCCATTAATCTGTCCACAGCATACTG TGGTAGAGCAATGCTAATCATTATGCTAATCTCGTAACTTGACTCCGATA TGTGCTCGACGACATGAAATCTTTTTCACCCCAACAAAAAGCCAACAGAT TTCTTTTGCTTGCCCACGCCTACACACTTTGTACAGGAGTTTGTGCGAGT GATTCATAAGCGTGACATGGTGCTTCTCCGGTCCTTGAAAGAAGCTGGAC GCAACATGAATGCTTGCAACAAATTCGGGGAAAGTTTATTGCACATGGCA ATGCGAAGGGGGGAGATCGAGATCGTCCGTTTCATGGTCCAAAACGGGGC GGTGCTCATGGTTTGTGATGACCAAGGCCGTACGCCATTGCACGACGCGT GCTGGGGCACGCAACCCTACTTTGAGCTGGTGCGAATCGTTCTTGATCGG AACCGAGATATGATTCGCGTGAAGGATCGGCGTGGCTTCACGCCTCTCTC CTACGTTCGCCGCGAGAGTTGGGTGGAATGGTGTTGCTTTCTCGAGGAGA TAAAGGATGTATACTGGCCACATCAGTTATGTCAAAAAGAAGTAGATCAA CCGGAAGGAGAGGCAGAAAGGACTGCTAGTCCACAGGATCCCCCAGACTG TGAAGCCACCCCTGAGGGCTAGGTATGTTTTGCTTTTGATGTTAGTTTCT CCTTCACAGTCCTCCTCCCTGCATATCTTTGGGTGCGGAGCTTGATATGT GAGCGTGTAGCACGGTGATGGCCTCCTACTGAGCATTTTCGTATTGACTT GCCCCTTTGCCTCACATTGCAGTGTTACTGGCTTCTTGTCCGGCACAGGG CTTTAGAACTCAAATATAAAGGATAGCAATTAAATGAACTTCACCCCTAT GGTGTACACTATCCGAAATCTTTCGACCAGGTGATCAGACAAAGAGAGTT GGGGTATGATCTGTAGGTGGTGCTACGCTAAGTCCACTTTTTGTCATTTG TGCCAATAATCTTTTTAATGTGACTGTTTTGTGTACATCCAGTGTAGTGG TTTTAAAATTCTGTTCTCCTAATGTCTAAGCCATAGCTTCAACTTTATTG GTTGGTGTGTTGGGTTTGTTCCTGTTGTGTGTTTAGACTTTGTGAGAATG TGAGTTATTGGGAGATGTGTGGGGATTCAGCGTTTTCCCGCAAGCAAACT TATGATGCATCAAACAGTACTATACAGATAGACTGCTGCAATAGAGTAAC ACGCTTTGTCATGCTGGTAAGATCTTCTCCTCCTGATGGCAATGAGATGA GAGATCATGGTGACCCCCTTTGCAGGGTTGTGACACCTTAGGCTTATTTC TTCATATTTTTGTTTTTTTCTAACACACAGATAGAGCTCTACTTACTGTA CATCAAAATTATGTGTTAGACAGTGTGGTATGTAGCAGTCGAGAGTAACT AGTTAGAGGTCTAGGAGGAAAATGTACCGGAAAATGTGGTCTTTTTTACA GCAACATGCAGACACTGGCACACGCGCACACTTGAGCTTTTCTCAAATTT GTTTGTTTGCGTTACCC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11257:1366..3532-

>mRNA_C-tenellus_contig11257.2.1 ID=mRNA_C-tenellus_contig11257.2.1|Name=mRNA_C-tenellus_contig11257.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=975bp|location=Sequence derived from alignment at C-tenellus_contig11257:1366..3532- (Choristocarpus tenellus KU2346)
ATGAGCTCGTACTGGGATCACCAGGAAGAATCCCCGCCTGCAGAGCCTAG
TAGTGACCAAGTAGTCGAAGCCAAGGCACAGTTGTCGACAGTAACTCCAG
GTGTTTCCCCAAAGCTCTCCTTGGGTGCCCGTTATGTGCAAGGTCGTGCC
CCAAGCGAGGTGCATGCTGTGACTGATACTCAAGACTCTGACCCCTCCAA
GATTGCGTCAGAAGTGAGTGAGGAATTGAGGAAAACTGTACTTTCAAACG
AAGTGGCGGACACAAGAAAAGGTGACAAGAACTTGGGAAATGACTCCATC
GGTGAAGATGCAACTAGTAATGAGCAAGTGGTTGGAAAAGGAGAAGGACA
GAGATGCACGCGAATAAGCCCTGAGATGGTTTTGGTCAGAATACTTGCCG
AAAGAGGTTACCCAACAGAGGCATTTCCTGCCCTAAGTCCGGCATACGTG
ACAGTCCCGACGGAGGATATGACCAAGGCTTACGACATGGAGTTTGTGCG
AGTGATTCATAAGCGTGACATGGTGCTTCTCCGGTCCTTGAAAGAAGCTG
GACGCAACATGAATGCTTGCAACAAATTCGGGGAAAGTTTATTGCACATG
GCAATGCGAAGGGGGGAGATCGAGATCGTCCGTTTCATGGTCCAAAACGG
GGCGGTGCTCATGGTTTGTGATGACCAAGGCCGTACGCCATTGCACGACG
CGTGCTGGGGCACGCAACCCTACTTTGAGCTGGTGCGAATCGTTCTTGAT
CGGAACCGAGATATGATTCGCGTGAAGGATCGGCGTGGCTTCACGCCTCT
CTCCTACGTTCGCCGCGAGAGTTGGGTGGAATGGTGTTGCTTTCTCGAGG
AGATAAAGGATGTATACTGGCCACATCAGTTATGTCAAAAAGAAGTAGAT
CAACCGGAAGGAGAGGCAGAAAGGACTGCTAGTCCACAGGATCCCCCAGA
CTGTGAAGCCACCCCTGAGGGCTAG
back to top