mRNA_C-tenellus_contig1125.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1125.1.1
Unique NamemRNA_C-tenellus_contig1125.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1125.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1125contigC-tenellus_contig1125:3906..8013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size3682
Hectar predicted targeting categoryother localisation
Exons2
Cds size3681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789170.1137974-CDS-C-tenellus_contig1125:3905..40851680789170.1137974-CDS-C-tenellus_contig1125:3905..4085Choristocarpus tenellus KU2346CDSC-tenellus_contig1125 3906..4085 +
1680789170.1272871-CDS-C-tenellus_contig1125:4512..80131680789170.1272871-CDS-C-tenellus_contig1125:4512..8013Choristocarpus tenellus KU2346CDSC-tenellus_contig1125 4513..8013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1125.1.1prot_C-tenellus_contig1125.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1125 3906..8013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1125.1.1

>prot_C-tenellus_contig1125.1.1 ID=prot_C-tenellus_contig1125.1.1|Name=mRNA_C-tenellus_contig1125.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=1227bp
TSPHRETTSYQHISATNRVWESKGSTLARPRFDHCFGKPYKVKCDEFLIL
AALEEVGSVQGWCKAFTWIIRDRLGENIMSDLRLATPLVGRPGGSTEDGP
SQIFPVAPLSPNAPHSTIVDVVETSDELSPPKRPKPSVNEAATVGDTTPV
RTSPAYASPNSPGFSYRTTTIEVNPEKIDLMGMLEAEAGIVRWVHGGSRT
EGVEVPTARNAGYHREASLAQDLIVRVASSALPGPVIFGLEAGKPYETEF
TLPGCYTFEVFKSPIWTGSFAVRKACSNPIALGSTPKKSSLQDGGVLEVG
QAKLEGELGEPLIEEILPKSENKMGPYAQQDPVNISVAQEVDSGGCIFSD
EEETSTDCDGGDGEEEDAQPQSVADISEEGIRQDEAEAKEPFLYGREDLV
EQPCGKDDESVGLMSLPAICPTQYLSLPVSESSEAVVQEGLNASEGESLL
DVQDNSEATGTASLEECVGSGDTSLLPVPIADCAREFRDQGRDGVEDSTL
DFRKKHARNEPLEKMLGGEMQENVKQASAIKLVQTLSPSMGDFRDRKDIG
QLMPQKEGEGKGDGALRDSDDNQTERVIEITVQYTEDAYEDMQQVAWCVP
GSLPEEVEVEENVLLQEEVGVALEQQGVTKELGGSLSTVDVGDILPQQDD
GDASSSFGPEKDKNGDTLSIQHSKELLLLGKEEGLKGKEDEDVSTPPASP
LPLVLPMALTQEVEAIVMEGVKGEMPELEGADGKIDSGEGQREEEVLVAL
TEGGHEEEKGEGELVGANTKGLSTPVTTEVGRVSMVGASTSELSPSPSHP
STLHVSPLSLHTASKGALVPKLDGDTDRDAPGCNNKSPNLSSNLVNCEKG
SSSLVSSDGEHAASVAVIRGGHLDINPLVTESRQYRFPSVVLVPEGVNVT
QQLDQADCAAHHPEDTGLMLQSSSPLVPPIQPLQQRLQVLERDGSGDEWR
LSSPLQSPAQEMGDDIKFTSMEVQQISKAHGSGHIHSIISEENELQEVTR
VNKTAMKDVVEAGGVSTAPRYSLQGSKGEQEEQGGGNGEMEGRKVEIVVT
GASPTVATPVDDASTMSAVVPTISQVIGTNIFDHTQNVVEVEKAAVVGRV
NEAVVVAVMKAGGAGGPARQQQEGRDDGCVCAEDMKVESVLMNTPGEVTT
AREDASDVYLPTTTDVTSTALSDHPHSSFEEETEEDEAVDVIETSMVAMT
KAVEADTRSEESSGGAGGERQDEQDGG
back to top

mRNA from alignment at C-tenellus_contig1125:3906..8013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1125.1.1 ID=mRNA_C-tenellus_contig1125.1.1|Name=mRNA_C-tenellus_contig1125.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4108bp|location=Sequence derived from alignment at C-tenellus_contig1125:3906..8013+ (Choristocarpus tenellus KU2346)
ACAAGTCCTCACCGTGAAACCACATCATATCAGCACATTTCAGCGACTAA
CAGAGTGTGGGAAAGTAAGGGGTCGACCCTTGCTAGACCCAGGTTTGATC
ATTGTTTTGGGAAGCCCTATAAGGTCAAATGCGATGAATTTTTGATTTTG
GCAGCTCTGGAGGAGGTGGGATCAGTCCAGGTGGGCAACGATATCTTTTA
GAGGGAAGGGTGGGGACAGTGAGGGGCATGACTAGGAAGACCGAAAAATA
TTTTCGGGGCTACTCGTCACTGTATCGCTTGAAAATGTTGAACTAAGCTA
TTAGTTTGAAATTCAAGTTGCTGGGATGTAAGCTGGCACGACAACGATGT
TAGATCTTTCGTTGGTTGCAGTATCCAGGGGATCGTGCAAGAAGATCCAT
ACCTCGGGTATGTGCCCTCCAAGCGCTTTCCCCATGATCTCGGGATTCGC
CACAAGTATGGTGTCACGTTTCCTCGATCGACCAATCTGTATGCCACAAG
TACTTGAAGTCTATGAACATAGCATACCTAACTCCTACCTTGACATCCTG
GTCTTCAAATAACAACTTTCTCTACCTCTCATTTCAATTTTTTCGATATG
GTCCTAGGGCTGGTGCAAAGCTTTTACTTGGATCATTCGAGATCGGTTAG
GGGAAAACATAATGTCGGATTTGAGGCTAGCTACCCCACTCGTGGGACGT
CCTGGAGGATCCACAGAGGATGGGCCGAGCCAGATATTCCCCGTAGCACC
ACTTTCGCCGAATGCCCCACACTCAACTATCGTCGACGTCGTGGAGACTT
CGGACGAGCTATCTCCTCCAAAGCGCCCGAAGCCGTCGGTCAATGAAGCT
GCTACTGTAGGGGATACAACACCTGTTCGCACATCTCCAGCGTACGCTTC
GCCTAACTCCCCCGGCTTCTCCTACAGGACTACAACTATTGAAGTTAACC
CTGAAAAGATCGACCTAATGGGAATGTTAGAGGCGGAGGCAGGTATTGTG
CGGTGGGTGCACGGGGGTTCCCGAACAGAAGGCGTTGAGGTGCCAACTGC
AAGGAATGCAGGGTATCACAGGGAAGCAAGCCTTGCGCAGGACCTCATCG
TCAGGGTGGCATCTTCTGCCCTTCCTGGGCCTGTCATCTTTGGGCTTGAA
GCTGGTAAACCTTATGAGACAGAGTTTACACTTCCAGGGTGTTACACCTT
CGAAGTGTTCAAGTCTCCAATCTGGACAGGCTCTTTTGCTGTAAGAAAGG
CCTGTAGTAATCCGATAGCTCTAGGATCTACCCCAAAGAAATCTTCATTA
CAAGACGGTGGGGTTCTCGAGGTAGGGCAAGCTAAACTTGAAGGGGAACT
TGGGGAACCACTGATAGAAGAAATCTTGCCAAAGAGTGAGAACAAGATGG
GACCATATGCACAACAGGATCCAGTGAATATTTCGGTTGCGCAGGAAGTG
GACAGTGGCGGGTGCATTTTTTCGGATGAGGAAGAAACTTCAACTGACTG
CGATGGAGGTGATGGAGAAGAGGAAGATGCACAGCCTCAGAGTGTGGCAG
ACATATCAGAGGAGGGCATACGACAGGATGAAGCAGAAGCAAAGGAACCT
TTCCTCTATGGAAGAGAAGATTTGGTGGAGCAACCTTGTGGGAAAGACGA
TGAGAGCGTGGGCTTGATGTCCCTCCCAGCAATATGCCCAACACAATATT
TATCACTCCCTGTTTCTGAGAGTAGTGAGGCAGTGGTGCAAGAGGGGCTA
AACGCTTCTGAGGGTGAATCACTGCTAGATGTGCAAGACAACAGTGAGGC
TACAGGGACTGCTTCTTTGGAAGAGTGTGTGGGATCAGGAGATACTAGTC
TGCTGCCTGTTCCAATAGCTGATTGTGCAAGGGAGTTTAGGGATCAGGGT
AGAGATGGGGTGGAGGATTCAACTCTTGATTTTCGCAAAAAGCATGCAAG
AAATGAGCCACTGGAAAAGATGTTGGGGGGAGAGATGCAGGAAAATGTAA
AACAGGCTTCAGCAATCAAACTGGTGCAGACATTGTCACCCTCAATGGGT
GATTTTAGGGATAGAAAAGATATAGGACAACTCATGCCACAAAAAGAGGG
CGAGGGAAAGGGGGATGGAGCATTGAGGGACTCTGATGACAATCAAACTG
AAAGAGTCATCGAGATCACAGTTCAATATACAGAGGATGCGTATGAGGAT
ATGCAGCAAGTGGCTTGGTGTGTACCAGGAAGTTTACCTGAAGAAGTTGA
GGTAGAGGAGAATGTACTACTGCAAGAAGAAGTGGGCGTGGCTTTGGAGC
AACAGGGGGTGACCAAGGAATTGGGAGGTTCCTTGTCTACAGTGGATGTG
GGAGATATTTTGCCACAGCAGGATGATGGGGATGCATCAAGCAGTTTTGG
ACCTGAAAAGGATAAAAATGGGGACACTCTATCGATACAGCATTCGAAGG
AGCTCTTGCTCTTGGGGAAGGAGGAGGGATTGAAAGGAAAAGAGGACGAG
GATGTTTCAACTCCCCCAGCTTCACCTTTGCCCCTTGTGCTCCCCATGGC
TCTCACCCAGGAGGTTGAGGCAATTGTGATGGAAGGGGTCAAAGGGGAAA
TGCCTGAGTTGGAGGGGGCTGATGGAAAGATAGACTCGGGGGAGGGACAG
AGGGAGGAAGAGGTTTTGGTGGCGTTGACAGAGGGGGGACACGAGGAAGA
AAAAGGGGAGGGAGAATTGGTTGGTGCCAATACTAAAGGCCTGTCAACTC
CTGTTACAACTGAAGTTGGTCGGGTTTCAATGGTGGGGGCATCAACATCA
GAGTTGTCTCCTTCACCATCCCACCCCTCCACCCTGCATGTGTCGCCATT
GAGTCTCCACACTGCCAGCAAGGGAGCTTTGGTACCCAAACTTGACGGTG
ACACTGACAGGGATGCCCCAGGTTGTAACAACAAGAGTCCAAACTTGAGC
TCAAACCTTGTGAATTGTGAAAAAGGCAGCTCAAGCTTGGTCAGCTCTGA
TGGAGAGCATGCTGCCAGTGTAGCAGTGATCCGTGGAGGACACCTGGACA
TCAACCCCCTGGTGACTGAAAGCAGGCAATACCGGTTCCCCTCGGTTGTT
CTGGTGCCAGAAGGAGTGAATGTGACCCAGCAACTGGACCAGGCTGATTG
TGCAGCGCACCATCCTGAGGACACAGGCTTGATGTTGCAGTCTAGCTCAC
CGCTTGTGCCACCTATCCAACCCCTCCAGCAGCGGCTGCAAGTTCTTGAG
AGGGACGGGAGTGGGGATGAATGGCGACTGAGCAGTCCCCTCCAGTCACC
TGCACAAGAAATGGGTGATGACATCAAGTTCACCAGCATGGAGGTGCAAC
AGATATCCAAGGCCCATGGTAGTGGCCACATTCACAGCATTATCTCAGAG
GAAAATGAGCTACAGGAGGTAACCAGGGTGAACAAAACAGCAATGAAAGA
TGTGGTTGAGGCTGGAGGGGTAAGTACTGCACCTAGATATTCCTTGCAAG
GATCAAAAGGGGAACAGGAAGAACAAGGTGGCGGCAATGGTGAGATGGAG
GGGAGGAAGGTTGAGATTGTTGTGACAGGCGCATCTCCTACAGTGGCAAC
TCCTGTGGATGATGCATCCACCATGTCTGCTGTTGTCCCTACAATCTCAC
AAGTTATTGGTACTAATATATTTGATCACACGCAAAATGTTGTAGAGGTG
GAAAAAGCAGCAGTAGTGGGAAGGGTGAATGAAGCAGTGGTGGTAGCAGT
GATGAAGGCTGGAGGGGCAGGGGGACCGGCAAGGCAGCAACAAGAGGGAC
GAGATGATGGGTGTGTGTGTGCTGAGGACATGAAGGTGGAGAGTGTGTTG
ATGAACACACCTGGTGAAGTTACAACTGCAAGAGAAGATGCATCAGATGT
TTACCTTCCTACTACAACAGATGTCACCAGCACGGCACTGTCTGACCACC
CTCACAGTAGTTTTGAAGAGGAAACAGAGGAAGATGAGGCGGTTGATGTG
ATTGAAACATCTATGGTAGCGATGACCAAAGCTGTAGAGGCAGACACTAG
AAGTGAAGAATCTTCTGGGGGAGCAGGGGGGGAACGACAGGATGAACAAG
ATGGTGGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1125:3906..8013+

>mRNA_C-tenellus_contig1125.1.1 ID=mRNA_C-tenellus_contig1125.1.1|Name=mRNA_C-tenellus_contig1125.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=3681bp|location=Sequence derived from alignment at C-tenellus_contig1125:3906..8013+ (Choristocarpus tenellus KU2346)
ACAAGTCCTCACCGTGAAACCACATCATATCAGCACATTTCAGCGACTAA
CAGAGTGTGGGAAAGTAAGGGGTCGACCCTTGCTAGACCCAGGTTTGATC
ATTGTTTTGGGAAGCCCTATAAGGTCAAATGCGATGAATTTTTGATTTTG
GCAGCTCTGGAGGAGGTGGGATCAGTCCAGGGCTGGTGCAAAGCTTTTAC
TTGGATCATTCGAGATCGGTTAGGGGAAAACATAATGTCGGATTTGAGGC
TAGCTACCCCACTCGTGGGACGTCCTGGAGGATCCACAGAGGATGGGCCG
AGCCAGATATTCCCCGTAGCACCACTTTCGCCGAATGCCCCACACTCAAC
TATCGTCGACGTCGTGGAGACTTCGGACGAGCTATCTCCTCCAAAGCGCC
CGAAGCCGTCGGTCAATGAAGCTGCTACTGTAGGGGATACAACACCTGTT
CGCACATCTCCAGCGTACGCTTCGCCTAACTCCCCCGGCTTCTCCTACAG
GACTACAACTATTGAAGTTAACCCTGAAAAGATCGACCTAATGGGAATGT
TAGAGGCGGAGGCAGGTATTGTGCGGTGGGTGCACGGGGGTTCCCGAACA
GAAGGCGTTGAGGTGCCAACTGCAAGGAATGCAGGGTATCACAGGGAAGC
AAGCCTTGCGCAGGACCTCATCGTCAGGGTGGCATCTTCTGCCCTTCCTG
GGCCTGTCATCTTTGGGCTTGAAGCTGGTAAACCTTATGAGACAGAGTTT
ACACTTCCAGGGTGTTACACCTTCGAAGTGTTCAAGTCTCCAATCTGGAC
AGGCTCTTTTGCTGTAAGAAAGGCCTGTAGTAATCCGATAGCTCTAGGAT
CTACCCCAAAGAAATCTTCATTACAAGACGGTGGGGTTCTCGAGGTAGGG
CAAGCTAAACTTGAAGGGGAACTTGGGGAACCACTGATAGAAGAAATCTT
GCCAAAGAGTGAGAACAAGATGGGACCATATGCACAACAGGATCCAGTGA
ATATTTCGGTTGCGCAGGAAGTGGACAGTGGCGGGTGCATTTTTTCGGAT
GAGGAAGAAACTTCAACTGACTGCGATGGAGGTGATGGAGAAGAGGAAGA
TGCACAGCCTCAGAGTGTGGCAGACATATCAGAGGAGGGCATACGACAGG
ATGAAGCAGAAGCAAAGGAACCTTTCCTCTATGGAAGAGAAGATTTGGTG
GAGCAACCTTGTGGGAAAGACGATGAGAGCGTGGGCTTGATGTCCCTCCC
AGCAATATGCCCAACACAATATTTATCACTCCCTGTTTCTGAGAGTAGTG
AGGCAGTGGTGCAAGAGGGGCTAAACGCTTCTGAGGGTGAATCACTGCTA
GATGTGCAAGACAACAGTGAGGCTACAGGGACTGCTTCTTTGGAAGAGTG
TGTGGGATCAGGAGATACTAGTCTGCTGCCTGTTCCAATAGCTGATTGTG
CAAGGGAGTTTAGGGATCAGGGTAGAGATGGGGTGGAGGATTCAACTCTT
GATTTTCGCAAAAAGCATGCAAGAAATGAGCCACTGGAAAAGATGTTGGG
GGGAGAGATGCAGGAAAATGTAAAACAGGCTTCAGCAATCAAACTGGTGC
AGACATTGTCACCCTCAATGGGTGATTTTAGGGATAGAAAAGATATAGGA
CAACTCATGCCACAAAAAGAGGGCGAGGGAAAGGGGGATGGAGCATTGAG
GGACTCTGATGACAATCAAACTGAAAGAGTCATCGAGATCACAGTTCAAT
ATACAGAGGATGCGTATGAGGATATGCAGCAAGTGGCTTGGTGTGTACCA
GGAAGTTTACCTGAAGAAGTTGAGGTAGAGGAGAATGTACTACTGCAAGA
AGAAGTGGGCGTGGCTTTGGAGCAACAGGGGGTGACCAAGGAATTGGGAG
GTTCCTTGTCTACAGTGGATGTGGGAGATATTTTGCCACAGCAGGATGAT
GGGGATGCATCAAGCAGTTTTGGACCTGAAAAGGATAAAAATGGGGACAC
TCTATCGATACAGCATTCGAAGGAGCTCTTGCTCTTGGGGAAGGAGGAGG
GATTGAAAGGAAAAGAGGACGAGGATGTTTCAACTCCCCCAGCTTCACCT
TTGCCCCTTGTGCTCCCCATGGCTCTCACCCAGGAGGTTGAGGCAATTGT
GATGGAAGGGGTCAAAGGGGAAATGCCTGAGTTGGAGGGGGCTGATGGAA
AGATAGACTCGGGGGAGGGACAGAGGGAGGAAGAGGTTTTGGTGGCGTTG
ACAGAGGGGGGACACGAGGAAGAAAAAGGGGAGGGAGAATTGGTTGGTGC
CAATACTAAAGGCCTGTCAACTCCTGTTACAACTGAAGTTGGTCGGGTTT
CAATGGTGGGGGCATCAACATCAGAGTTGTCTCCTTCACCATCCCACCCC
TCCACCCTGCATGTGTCGCCATTGAGTCTCCACACTGCCAGCAAGGGAGC
TTTGGTACCCAAACTTGACGGTGACACTGACAGGGATGCCCCAGGTTGTA
ACAACAAGAGTCCAAACTTGAGCTCAAACCTTGTGAATTGTGAAAAAGGC
AGCTCAAGCTTGGTCAGCTCTGATGGAGAGCATGCTGCCAGTGTAGCAGT
GATCCGTGGAGGACACCTGGACATCAACCCCCTGGTGACTGAAAGCAGGC
AATACCGGTTCCCCTCGGTTGTTCTGGTGCCAGAAGGAGTGAATGTGACC
CAGCAACTGGACCAGGCTGATTGTGCAGCGCACCATCCTGAGGACACAGG
CTTGATGTTGCAGTCTAGCTCACCGCTTGTGCCACCTATCCAACCCCTCC
AGCAGCGGCTGCAAGTTCTTGAGAGGGACGGGAGTGGGGATGAATGGCGA
CTGAGCAGTCCCCTCCAGTCACCTGCACAAGAAATGGGTGATGACATCAA
GTTCACCAGCATGGAGGTGCAACAGATATCCAAGGCCCATGGTAGTGGCC
ACATTCACAGCATTATCTCAGAGGAAAATGAGCTACAGGAGGTAACCAGG
GTGAACAAAACAGCAATGAAAGATGTGGTTGAGGCTGGAGGGGTAAGTAC
TGCACCTAGATATTCCTTGCAAGGATCAAAAGGGGAACAGGAAGAACAAG
GTGGCGGCAATGGTGAGATGGAGGGGAGGAAGGTTGAGATTGTTGTGACA
GGCGCATCTCCTACAGTGGCAACTCCTGTGGATGATGCATCCACCATGTC
TGCTGTTGTCCCTACAATCTCACAAGTTATTGGTACTAATATATTTGATC
ACACGCAAAATGTTGTAGAGGTGGAAAAAGCAGCAGTAGTGGGAAGGGTG
AATGAAGCAGTGGTGGTAGCAGTGATGAAGGCTGGAGGGGCAGGGGGACC
GGCAAGGCAGCAACAAGAGGGACGAGATGATGGGTGTGTGTGTGCTGAGG
ACATGAAGGTGGAGAGTGTGTTGATGAACACACCTGGTGAAGTTACAACT
GCAAGAGAAGATGCATCAGATGTTTACCTTCCTACTACAACAGATGTCAC
CAGCACGGCACTGTCTGACCACCCTCACAGTAGTTTTGAAGAGGAAACAG
AGGAAGATGAGGCGGTTGATGTGATTGAAACATCTATGGTAGCGATGACC
AAAGCTGTAGAGGCAGACACTAGAAGTGAAGAATCTTCTGGGGGAGCAGG
GGGGGAACGACAGGATGAACAAGATGGTGGG
back to top