mRNA_C-tenellus_contig11212.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11212.1.1
Unique NamemRNA_C-tenellus_contig11212.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11212.1.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.360e-48
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 1 
Query:    1 LVEAVQSVLGGPGEEGGLGEGFVEACLSCLGWSPQAVVEAFIEGRLPPQVASLERGLRRAWKGKKGDLDKAYRVDKELAAKEGQRQLALEREAEMDAWILSREYDDDYDDQVGR 342
            +V++VQ+VLGG GE GGLGEGFVEACLS LGWSPQ V+EA +E RLPPQVA+L RGLRRAWKGKKGDLDKAYRVDK+LAA E +R +A+E+  E DA++LSREYDDDYDDQ  R
Sbjct:  346 MVKSVQAVLGGTGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQAWR 459
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BLAST of mRNA_C-tenellus_contig11212.1.1 vs. uniprot
Match: A0A7S2AVJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AVJ1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.220e-12
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:   49 GLGEGFVEACLSCLGWSPQAVVEAFIEGRLPPQVASLERGLRRAWKGKKG--DLDKAYRVDKEL----AAKEGQRQLA--LEREAEMDAWILSREYDDDYDDQ 333
            GLG GFVEA L    +S   VV A ++  LPPQ+  ++R L R    +K   D+D  Y V  +       +E QRQL   ++R+ E +AW+LSREYDDD+DDQ
Sbjct:    1 GLGAGFVEAMLVFHDFSVARVVAAVLDDNLPPQLEGMDRKLGRYRVSRKDLKDIDAGYSVGSQARDDDVLREKQRQLIRNMDRDEEDNAWVLSREYDDDFDDQ 103
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BLAST of mRNA_C-tenellus_contig11212.1.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.400e-7
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LVEAVQSVLGGPGEEGGLGEGFVEACLSCLGWSPQ 105
            ++  VQ V GGP +EGG+GEGFVEACLS +GWSPQ
Sbjct:  737 MIAEVQEVFGGPEQEGGVGEGFVEACLSLMGWSPQ 771
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11212.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6J2_9PHAE2.360e-4874.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2AVJ1_9STRA3.220e-1243.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CBT6_9STRA9.400e-768.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11212contigC-tenellus_contig11212:234..2179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_03575T0
Preferred nameASCC2
PFAMsCUE
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K15015,ko:K18667
KEGG TC2.A.18.5
KEGG Pathwayko04721,ko04723,ko04727,ko05032,ko05033,map04721,map04723,map04727,map05032,map05033
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032182,GO:0032991,GO:0033554,GO:0034641,GO:0035510,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0099053,GO:1901360,GO:1903506,GO:2000112,GO:2001141
Exons3
Evalue5.41e-05
EggNOG OGsKOG4501@1|root,KOG4501@2759|Eukaryota
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-23_002680.1
Descriptionactivating signal cointegrator 1 complex subunit
Cds size351
COG categoryE
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789168.7237213-CDS-C-tenellus_contig11212:233..3981680789168.7237213-CDS-C-tenellus_contig11212:233..398Choristocarpus tenellus KU2346CDSC-tenellus_contig11212 234..398 -
1680789168.736195-CDS-C-tenellus_contig11212:1803..18841680789168.736195-CDS-C-tenellus_contig11212:1803..1884Choristocarpus tenellus KU2346CDSC-tenellus_contig11212 1804..1884 -
1680789168.7518063-CDS-C-tenellus_contig11212:2074..21791680789168.7518063-CDS-C-tenellus_contig11212:2074..2179Choristocarpus tenellus KU2346CDSC-tenellus_contig11212 2075..2179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11212.1.1prot_C-tenellus_contig11212.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11212 234..2179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11212.1.1

>prot_C-tenellus_contig11212.1.1 ID=prot_C-tenellus_contig11212.1.1|Name=mRNA_C-tenellus_contig11212.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=117bp
LVEAVQSVLGGPGEEGGLGEGFVEACLSCLGWSPQAVVEAFIEGRLPPQV
ASLERGLRRAWKGKKGDLDKAYRVDKELAAKEGQRQLALEREAEMDAWIL
SREYDDDYDDQVGRRNM
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mRNA from alignment at C-tenellus_contig11212:234..2179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11212.1.1 ID=mRNA_C-tenellus_contig11212.1.1|Name=mRNA_C-tenellus_contig11212.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1946bp|location=Sequence derived from alignment at C-tenellus_contig11212:234..2179- (Choristocarpus tenellus KU2346)
CTTGTGGAGGCTGTGCAGTCAGTACTGGGTGGGCCTGGGGAGGAGGGTGG
TCTGGGAGAGGGCTTTGTGGAGGCATGCTTGTCGTGTCTGGGATGGTCAC
CACAGGTCAAGTCCCCTTTACGCTGAGCATTGATTCAGAGAGTTTTTGCA
CTAAAGCCTTGTCCTTCCCACTCCACAGTGTATTATAAGCTCATGCCGTG
TAAGTGATAATAACCTGCAATCTTGCATAGTTGTTTTGTCATTGCCCATT
CCACTCTCACATGTCTCCCTTATTTCGCTTCCAATCGCAAAGTAGGCTGT
TGTGGAGGCGTTTATTGAGGGGAGACTTCCACCCCAGGTGGCTAGTCTTG
AACGAGGTCTCAGGCGTGCCTGGAAGGTGAGGCCTTGGTTGAGAGGTGCA
TGTCAGGCAATCTTTGTGCTTCATTGCTTTGCATTTGGACTAGAAGGTAG
TACAATGCGGTGTTCGTATTGTTTATCCAGTCACAGTGTACTCCATACTT
TTGGTTGATCAAGCCATTGATTGCATCTGATGGTGTTGTGTTAGTTTTTT
CAGCACATTTTTCAATAAATCTGTGTATTTGTTTGTGTATGTGTGTTTGT
GGTGTTTCTTTTTGTACTGTTTATGATTATAGGGGTTTTTTGTGTTTAAG
AGGTCATGACTGATACTTTGAAGCATAACGTTGGATATATGTACATGTAG
ATTTAATGCAAAGTATGTAGTACTAAATTGTTATTTGTAGTTCATAGCCT
CATAGGTCCAGGGACTGGTCCAGGGAGTAATGTAAAACATTCAAGGTAGA
GGTTTGTCCACAAGGGCTTGGAAAAAGGCAGTAATCTCAAATGCCACTAT
ACTTGGTGTGTAGATTTGAAGACAGGGATTAAATGTGATCAGTGAGAATC
ATACATGAGCTTGGGCTTTGTACCGGCACTTGGAATGTCACTTTTGTGCG
ATAAGTTTGGGGTCTGCGAGGTAATGCCAAAGGGCTTGAAATCAGAGAGT
GAGGGTTTTTTGGATGTTTGCCGTCAAGGAGATTGGGAGGGGGAGGAGGT
GGGGAAGATTGAGACGGAATTGGGCAGAGTAAGGGCTGTTCCTTATCACC
TAGGAGCCTGTTGACTTTTTAAAACTAAATCTTGATATGAAATATAACCT
TTACTCTCGTGTAGAAATTAGTTGGGGCTTTTTTTAATGTTTTTGAACAA
TATGTTGCCAAATATTGAAAGAGGTTAGAAAGTTTTTTTGTCAATAAAGG
ATGAGTTATTGTTTCCATTTTTGTGACAGGAAGTTCTCCTGTGTGGGAGG
TATGACTAAATTCAGTGTTTTGGAGCATGCCTTATCGAGGCTGACTGTGC
TTGTTGCACCTGTGATGATATGTTGTGTCCCTTCTTTCAAAGGGGTCGAA
ACATTATCTGTAACTGCCCATGATGCACTGTGTTCCCTGTTGGATTTTAT
GTCATAATTTGTTATAGAAATATTGTTTCCATGTATTATGATTCAATTTA
CACTCTATGTGGTGACATAATTGTAAACCCCTCAAACCTTCCCTTGTTCC
CCTATTCTTTGCCTTGCATGAAACCACTGAGATCAAACTTAAAGTGTCAT
GGGAATTGATCGATCATATACTTTGTTGAAGGAATACAACTATATTGAGA
GAGAGAGAGAGGGGGGGAAAGAGCTTGTATGGCTATTTTTAAGGTTGGGG
TCAATACAAGTACACTATTCTGTTGCTCGAATATTTGCTACTACTATGCT
TCCCCCCCCCCCCTCGCTTCCTGTGGGATAGGGCAAGAAGGGGGATCTAG
ACAAGGCATACCGTGTAGACAAGGAGCTTGCGGCTAAGGAAGGCCAACGT
CAATTGGCACTGGAGAGGGAAGCTGAGATGGATGCTTGGATTTTGTCAAG
GGAGTATGATGATGATTATGATGACCAGGTGGGGAGAAGAAATATG
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Coding sequence (CDS) from alignment at C-tenellus_contig11212:234..2179-

>mRNA_C-tenellus_contig11212.1.1 ID=mRNA_C-tenellus_contig11212.1.1|Name=mRNA_C-tenellus_contig11212.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=351bp|location=Sequence derived from alignment at C-tenellus_contig11212:234..2179- (Choristocarpus tenellus KU2346)
CTTGTGGAGGCTGTGCAGTCAGTACTGGGTGGGCCTGGGGAGGAGGGTGG
TCTGGGAGAGGGCTTTGTGGAGGCATGCTTGTCGTGTCTGGGATGGTCAC
CACAGGCTGTTGTGGAGGCGTTTATTGAGGGGAGACTTCCACCCCAGGTG
GCTAGTCTTGAACGAGGTCTCAGGCGTGCCTGGAAGGGCAAGAAGGGGGA
TCTAGACAAGGCATACCGTGTAGACAAGGAGCTTGCGGCTAAGGAAGGCC
AACGTCAATTGGCACTGGAGAGGGAAGCTGAGATGGATGCTTGGATTTTG
TCAAGGGAGTATGATGATGATTATGATGACCAGGTGGGGAGAAGAAATAT
G
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