mRNA_C-tenellus_contig1119.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1119.2.2
Unique NamemRNA_C-tenellus_contig1119.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: D8LF00_ECTSI (Isochorismatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF00_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 9.740e-45
Identity = 80/165 (48.48%), Postives = 98/165 (59.39%), Query Frame = 1
Query:   13 GTALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFA--PSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            GTALLIVDPQ DFH GG+LAI GA  DAERIA L+T    +IDEI VTLDSHH+MDIAHP FW +  G    P+PFTLI +EDI  G W+PV++++                                         +E+C  YT++LEEGG FTLC+WPEHCL+
Sbjct:   24 GTALLIVDPQADFHEGGALAIQGASDDAERIAQLVTDQSEHIDEIVVTLDSHHRMDIAHPMFWTDGRGGGSYPAPFTLIKSEDIQNGTWLPVEEEH-----------------------------------------KEHCIEYTRKLEEGGKFTLCVWPEHCLI 147          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: K0S5P6_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5P6_THAOC)

HSP 1 Score: 151 bits (381), Expect = 6.580e-43
Identity = 76/162 (46.91%), Postives = 98/162 (60.49%), Query Frame = 1
Query:   16 TALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            T LL++D Q DFHPGGSLAIP A  DAER A+ I +HG +I  I +T+DSHHK+ IAHP FW ++EG  P+PFTLIT +D+  G+W+P  D  L   +   L    +             +   LY S  E    +YC  YT++LE  G F LCIWPEHCL+
Sbjct:   15 TTLLLIDIQKDFHPGGSLAIPTALDDAERTAAFIKKHGSSIRRIVMTMDSHHKLHIAHPCFWTDTEGNHPNPFTLITMDDVQTGKWIPRSD--LKHPVQKPLVDDEVLAQGG-------KLPANLYKSDGELDIVQYCIEYTRRLEARGRFQLCIWPEHCLI 167          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: A0A7S2UAS2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAS2_9STRA)

HSP 1 Score: 147 bits (372), Expect = 7.030e-41
Identity = 81/169 (47.93%), Postives = 99/169 (58.58%), Query Frame = 1
Query:    4 STSGTALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSE--GFAPSPFTLITTEDIIAGRWVPVQDQYL-VQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            S   T LL+VD QN FHPGGSLAIP AD DA RIA+LI     +ID I  T+DSHHK+ IAHP FW + +  G  P PF+LI+T DII+G+W P  D  L V   H+     H   Y +T  +   N  L            +YC  YT++LE  G F LCIWPEHCL+
Sbjct:   10 SNKTTTLLLVDVQNSFHPGGSLAIPTADEDAVRIATLIRSSSSSIDRIVATMDSHHKLHIAHPSFWVSGDDMGKHPDPFSLISTVDIISGKWKPRPDLVLPVGDPHVDPCIFHG--YEATVTSDGSNFDL-----------TKYCIEYTRRLEAKGRFQLCIWPEHCLI 165          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: B8CG08_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG08_THAPS)

HSP 1 Score: 145 bits (367), Expect = 1.090e-40
Identity = 72/165 (43.64%), Postives = 97/165 (58.79%), Query Frame = 1
Query:   16 TALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFG---HLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            T LL++D Q DFHPGGSLAIP A +DA+R A  I Q+  +I  I  T+DSH K+ IAHP FWKN +G  P+PFT+I+ ED++ G+W+P  D          L F    H  +     + T  +V   L+         ++C  YT++LE  G F LCIWPEHCL+
Sbjct:    2 TTLLLIDVQKDFHPGGSLAIPTASSDAQRTAQFIRQNASSIHRIVATMDSHQKLHIAHPCFWKNDKGEHPNPFTVISNEDVVTGKWIPRSD----------LKFPVVPHGVMMDDAVLATGGDVPEKLHGEAGSLDILQWCIEYTKRLESKGRFQLCIWPEHCLI 156          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: A0A7S4S579_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S579_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.130e-40
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 1
Query:    4 STSGTALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            ++ GT LL++D QNDFHPGGSLAIP A+ DA+RIASLI  +  +ID I  TLDSH K+ IAHP FW   +G  PSPFT+I ++++ +G+W P +D   V    L      +F      I    ++ L            +YC  YT+ LE+ G F LCIWPEHC+V
Sbjct:   12 NSGGTTLLLIDVQNDFHPGGSLAIPTANEDADRIASLIRNNMSSIDRIIATLDSHRKLHIAHPAFWVGEDGKNPSPFTIIASDEVESGKWKPREDL-KVPSTELDTV---IFEKAEDVIREDGSIDLL-----------KYCIEYTRALEKKGRFQLCIWPEHCIV 162          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: A0A7S0GAH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAH6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.900e-39
Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    7 TSGTALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQ------HGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFE--EYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            T  + LLI+DPQ DFHPGGSLAI  AD D+ERIASLI         G  I+ IFVTLD+HHK+ I HP FW N +G  P PFTLI++ D+ +G W+P  +        L +  G +            +  +F    +++  F+  ++C  YT+ +E+ GHF  CIWPEHCL+
Sbjct:   18 TMASTLLIIDPQKDFHPGGSLAIDKADEDSERIASLIRNSTEKDGRGSTIERIFVTLDTHHKLHIGHPCFWVNVDGNHPEPFTLISSADVESGLWIPRGN--------LHIPDGMV------------DKDIFDGGFNIDGSFDLKKHCVQYTKSVEKSGHFKHCIWPEHCLL 170          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: A0A7S0TDT2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0TDT2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.040e-39
Identity = 68/166 (40.96%), Postives = 101/166 (60.84%), Query Frame = 1
Query:   16 TALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYAS----HVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            T LL++D Q DFHPGGSLA+P AD+DAERI   I Q+  +I  I  T+DSHH + IAHP FW + +G  P+PFT+I+ ED++ GRW+P +D        ++ +     +     +     +   LY++    + +   +++C  YT++LE  G F+L IWPEHCLV
Sbjct:    2 TTLLLIDCQKDFHPGGSLAVPNADSDAERITQFIHQNATSIHRIVATMDSHHPLHIAHPSFWSDGQGNLPAPFTVISMEDVVEGRWIPRED--------VKPSARESLLIEDDILLAGDGIPSELYSTDETGNRQLNMKQWCIEYTRRLEAKGKFSLMIWPEHCLV 159          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: A0A7S0TFS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0TFS9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 8.320e-39
Identity = 68/166 (40.96%), Postives = 101/166 (60.84%), Query Frame = 1
Query:   16 TALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYAS----HVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            T LL++D Q DFHPGGSLA+P AD+DAERI   I Q+  +I  I  T+DSHH + IAHP FW + +G  P+PFT+I+ ED++ GRW+P +D        ++ +     +     +     +   LY++    + +   +++C  YT++LE  G F+L IWPEHCLV
Sbjct:    2 TTLLLIDCQKDFHPGGSLAVPNADSDAERITQFIHQNATSIHRIVATMDSHHPLHIAHPSFWSDGQGNLPAPFTVISMEDVVEGRWIPRED--------VKPSARESLLIEDDILLAGDGIPSELYSTDETGNRQLNMKQWCIEYTRRLEAKGKFSLMIWPEHCLV 159          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: A0A6G0XHW0_9STRA (Isochorismatase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHW0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.500e-38
Identity = 70/166 (42.17%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    4 STSGTALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            S  G  LLI+DPQ DFHPGGSLAIP AD DA R A+ I  H  +ID++ +TLDSH ++ IAH  FW N +G +P PFTLIT+ED+  G+W     +                            V +++Y              YT+ LE+GG FTLCIWPEHC++
Sbjct:   16 SQGGVTLLIIDPQRDFHPGGSLAIPSADEDAGRTAAFIRNHLNDIDQLIITLDSHQRLHIAHSVFWTNEKGESPPPFTLITSEDVANGKWKARSPE----------------------------VQVYVYE-------------YTKALEQGGRFTLCIWPEHCII 140          
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Match: A0A067BU91_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BU91_SAPPC)

HSP 1 Score: 139 bits (351), Expect = 1.150e-37
Identity = 69/163 (42.33%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   13 GTALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIFVTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLVQYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQLEEGGHFTLCIWPEHCLV 501
            G AL I+DPQ DFHPGGSLAIP A+ DAER A+ I +H   I ++ +TLDSH ++ IAH  FWKN +G +P+PFTLIT+ED+  G+W P   +                                          + Y   YT+ LE GG FTLCIWPEHC++
Sbjct:   21 GLALFIIDPQVDFHPGGSLAIPTANDDAERTAAFIRKHMTAITQLVITLDSHQRLHIAHGVFWKNVDGASPAPFTLITSEDVANGKWSPRAPE-----------------------------------------LQAYAYEYTKALEAGGRFTLCIWPEHCII 142          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1119.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF00_ECTSI9.740e-4548.48Isochorismatase domain-containing protein n=2 Tax=... [more]
K0S5P6_THAOC6.580e-4346.91Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2UAS2_9STRA7.030e-4147.93Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8CG08_THAPS1.090e-4043.64Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4S579_9STRA2.130e-4045.18Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0GAH6_9STRA1.900e-3942.77Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S0TDT2_9STRA3.040e-3940.96Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0TFS9_9STRA8.320e-3940.96Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6G0XHW0_9STRA1.500e-3842.17Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A067BU91_SAPPC1.150e-3742.33Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1119contigC-tenellus_contig1119:1062..1934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LF00
PFAMsIsochorismatase
Model size501
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.6e-45
EggNOG OGsCOG1335@1|root,2QW5A@2759|Eukaryota
Descriptionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
Cds size501
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789167.64281-CDS-C-tenellus_contig1119:1061..12321680789167.64281-CDS-C-tenellus_contig1119:1061..1232Choristocarpus tenellus KU2346CDSC-tenellus_contig1119 1062..1232 +
1680789167.6579108-CDS-C-tenellus_contig1119:1492..17411680789167.6579108-CDS-C-tenellus_contig1119:1492..1741Choristocarpus tenellus KU2346CDSC-tenellus_contig1119 1493..1741 +
1680789167.6705933-CDS-C-tenellus_contig1119:1853..19341680789167.6705933-CDS-C-tenellus_contig1119:1853..1934Choristocarpus tenellus KU2346CDSC-tenellus_contig1119 1854..1934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1119.2.2prot_C-tenellus_contig1119.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1119 1062..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1119.2.2

>prot_C-tenellus_contig1119.2.2 ID=prot_C-tenellus_contig1119.2.2|Name=mRNA_C-tenellus_contig1119.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=167bp
MSTSGTALLIVDPQNDFHPGGSLAIPGADTDAERIASLITQHGGNIDEIF
VTLDSHHKMDIAHPKFWKNSEGFAPSPFTLITTEDIIAGRWVPVQDQYLV
QYIHLQLTFGHLFIYRSTTINTKCNVSLFLYASHVENPFEEYCKTYTQQL
EEGGHFTLCIWPEHCLV
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mRNA from alignment at C-tenellus_contig1119:1062..1934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1119.2.2 ID=mRNA_C-tenellus_contig1119.2.2|Name=mRNA_C-tenellus_contig1119.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=873bp|location=Sequence derived from alignment at C-tenellus_contig1119:1062..1934+ (Choristocarpus tenellus KU2346)
ATGTCAACTTCTGGTACAGCACTGCTAATCGTCGACCCACAGAATGACTT CCACCCAGGGGGGTCCTTGGCAATTCCTGGAGCGGATACTGATGCAGAGC GTATCGCCTCATTAATCACACAACATGGTGGCAACATTGATGAGATATTT GTCACTCTTGATTCCCACCATGTAAGAAGCATCTCATGGACATGTATAGT GTCTGATATGCATGACCTTGGTCTACTGAAGAAATGGATACTTAGGAAAG TTGATCACTGAACTGGCTACCGATGGGCAGCCAAGTTGGCCTCTTCTCAG CCTCTTGTGAAGTATTGTTTTTGTCTCCACTTCTTACTCCGTCCAGTCCC ATCAGACGGCATTTTGTCTCTGCGACATCTTGCCTGCATTGAATTTTATG TGCACCCCTCAACCCTATGTCATTCCTCCAGAAAATGGATATTGCTCACC CCAAGTTCTGGAAGAATTCGGAGGGATTCGCGCCTTCTCCGTTTACTCTC ATTACCACTGAGGACATAATTGCTGGTCGCTGGGTTCCTGTGCAGGACCA ATACCTGGTGCAGTATATACACTTGCAACTTACCTTTGGGCACTTATTTA TATACCGGAGCACAACTATCAACACAAAGTGCAATGTTAGTTTGTTCCTA TATGCATCTCATGTTGAAAACCCATTTGAGGTGGGAGACCTTTACACTAT CTTTCAACGTGACAATGAAGCAAGAACGCGGGAAAATATGTGTTCGACAT AGGCTTTACTGACTTATCATGGAAGTCTCAAACCTCGCCCAGGAATATTG CAAGACTTATACTCAGCAGCTAGAGGAAGGCGGACATTTCACACTCTGCA TTTGGCCCGAGCATTGCCTGGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig1119:1062..1934+

>mRNA_C-tenellus_contig1119.2.2 ID=mRNA_C-tenellus_contig1119.2.2|Name=mRNA_C-tenellus_contig1119.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=501bp|location=Sequence derived from alignment at C-tenellus_contig1119:1062..1934+ (Choristocarpus tenellus KU2346)
ATGTCAACTTCTGGTACAGCACTGCTAATCGTCGACCCACAGAATGACTT
CCACCCAGGGGGGTCCTTGGCAATTCCTGGAGCGGATACTGATGCAGAGC
GTATCGCCTCATTAATCACACAACATGGTGGCAACATTGATGAGATATTT
GTCACTCTTGATTCCCACCATAAAATGGATATTGCTCACCCCAAGTTCTG
GAAGAATTCGGAGGGATTCGCGCCTTCTCCGTTTACTCTCATTACCACTG
AGGACATAATTGCTGGTCGCTGGGTTCCTGTGCAGGACCAATACCTGGTG
CAGTATATACACTTGCAACTTACCTTTGGGCACTTATTTATATACCGGAG
CACAACTATCAACACAAAGTGCAATGTTAGTTTGTTCCTATATGCATCTC
ATGTTGAAAACCCATTTGAGGAATATTGCAAGACTTATACTCAGCAGCTA
GAGGAAGGCGGACATTTCACACTCTGCATTTGGCCCGAGCATTGCCTGGT
A
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