mRNA_C-tenellus_contig11189.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11189.1.1
Unique NamemRNA_C-tenellus_contig11189.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11189.1.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.540e-6
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:    1 IKQINKNICRCPDGPGMFATSGAGNTLTVWDVCEQRIPLSVSAVEDKKTTNTGIALRWAPG 183
            ++ +  ++  CP  P +FAT+GAG+ LTVWD  +   PL    V+ ++ + T +  RW PG
Sbjct:  891 VQAVVHDVAWCPTSPNLFATTGAGHILTVWDTSDVFEPLCSIPVKTQRCSGTSV--RWGPG 949
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BLAST of mRNA_C-tenellus_contig11189.1.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 3.480e-6
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:    1 IKQINKNICRCPDGPGMFATSGAGNTLTVWDVCEQRIPLSVSAVEDKKTTNTGIALRWAPG 183
            ++ +  ++  CP  P +FAT+GAG+ LTVWD  +   PL    V+ ++ + T +  RW PG
Sbjct: 1276 VQAVVNDVAWCPTSPNLFATTGAGHILTVWDTSDVFEPLCSIPVKTQRCSGTTV--RWGPG 1334
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11189.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCY4_9PHAE2.540e-636.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDG0_ECTSI3.480e-636.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11189contigC-tenellus_contig11189:1240..1422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789167.5528476-CDS-C-tenellus_contig11189:1239..14221680789167.5528476-CDS-C-tenellus_contig11189:1239..1422Choristocarpus tenellus KU2346CDSC-tenellus_contig11189 1240..1422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11189.1.1prot_C-tenellus_contig11189.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11189 1240..1422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11189.1.1

>prot_C-tenellus_contig11189.1.1 ID=prot_C-tenellus_contig11189.1.1|Name=mRNA_C-tenellus_contig11189.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=61bp
IKQINKNICRCPDGPGMFATSGAGNTLTVWDVCEQRIPLSVSAVEDKKTT
NTGIALRWAPG
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mRNA from alignment at C-tenellus_contig11189:1240..1422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11189.1.1 ID=mRNA_C-tenellus_contig11189.1.1|Name=mRNA_C-tenellus_contig11189.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=183bp|location=Sequence derived from alignment at C-tenellus_contig11189:1240..1422+ (Choristocarpus tenellus KU2346)
ATCAAACAAATAAATAAAAATATTTGCAGGTGCCCGGACGGACCGGGTAT
GTTTGCCACTTCTGGTGCAGGAAACACTTTGACAGTGTGGGATGTATGTG
AGCAGCGCATTCCGCTTTCAGTCAGTGCAGTGGAGGATAAGAAGACTACA
AACACTGGCATAGCTCTTCGGTGGGCCCCTGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig11189:1240..1422+

>mRNA_C-tenellus_contig11189.1.1 ID=mRNA_C-tenellus_contig11189.1.1|Name=mRNA_C-tenellus_contig11189.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=183bp|location=Sequence derived from alignment at C-tenellus_contig11189:1240..1422+ (Choristocarpus tenellus KU2346)
ATCAAACAAATAAATAAAAATATTTGCAGGTGCCCGGACGGACCGGGTAT
GTTTGCCACTTCTGGTGCAGGAAACACTTTGACAGTGTGGGATGTATGTG
AGCAGCGCATTCCGCTTTCAGTCAGTGCAGTGGAGGATAAGAAGACTACA
AACACTGGCATAGCTCTTCGGTGGGCCCCTGGC
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