mRNA_C-tenellus_contig11171.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11171.2.1
Unique NamemRNA_C-tenellus_contig11171.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11171.2.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.170e-14
Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:    1 KEMGAVMSVALATPGG---GTLVTGSYDGYVRVFFNAL------PPRKPPRHRPVAGAAEALVLGRHKEGVRAVAVSEDGRWVVSGCRGGIINIWETP 267
            KE G +  VA++  G    G LVTGSYD  VRV  N L      PP                +LGRH+EGVRAVA+S DGRW V+G R GI+ +WE P
Sbjct:  319 KEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENPPSSSXXXXXXXPPVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGIVKVWEVP 416
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BLAST of mRNA_C-tenellus_contig11171.2.1 vs. uniprot
Match: D8LF89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF89_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.180e-14
Identity = 45/99 (45.45%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:    1 KEMGAVMSVALATPGG---GTLVTGSYDGYVRVFFNALPPRK--PPRHRPVAGAAEAL-----VLGRHKEGVRAVAVSEDGRWVVSGCRGGIINIWETP 267
            KE G +  VA++  G    G LVTGSYD  VRV  N L P +  PP                 +LGRH+EGVRAVA+S DGRW V+G R G++ +WE P
Sbjct:  120 KEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENPPXXXXXXXXXXXXXVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGLVKVWEVP 218
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BLAST of mRNA_C-tenellus_contig11171.2.1 vs. uniprot
Match: A0A7C4YCH4_9BACT (ANAPC4_WD40 domain-containing protein (Fragment) n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4YCH4_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 3.720e-5
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   10 GAVMSVALATPGGGTLVTGSYDGYVRVFFNALPPRKPPRHR-PVAGAAEALVLGRHKEGVRAVAVSEDGRWVVSGCRGGIINIWETP 267
            G++ S+   T  G  +VTG  D  VRV+   +P   PP  + P    A   VL  H   V +VAVS+DG+ +VSG R  +  IW+ P
Sbjct:  157 GSINSIVF-TSDGKRIVTGGLDNSVRVWI--VPTNSPPAEKQPPPSFAPFAVLQGHTNWVLSVAVSKDGKTIVSGGRDNVARIWDMP 240
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BLAST of mRNA_C-tenellus_contig11171.2.1 vs. uniprot
Match: A0A166IYK3_9AGAM (WD40 repeat-like protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166IYK3_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 4.940e-5
Identity = 34/88 (38.64%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:    4 EMGAVMSVALATPGGGTLVTGSYDGYVRVFF--NALPPRKPPRHRPVAGAAEALVLGRHKEGVRAVAVSEDGRWVVSGCRGGIINIWE 261
             M  +MS+A  TP    LVTGS D  V  +   + LPP+ P     V   A       HKE V  VAVS DG+W++SG   G +  W+
Sbjct:  521 HMRGIMSLAF-TPDSVGLVTGSTDQLVMYWDLGSKLPPKAP-----VERHASTRTFVGHKESVTCVAVSRDGKWIISGGWDGTVRFWD 602
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11171.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L7H8_9PHAE1.170e-1445.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF89_ECTSI3.180e-1445.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7C4YCH4_9BACT3.720e-537.93ANAPC4_WD40 domain-containing protein (Fragment) n... [more]
A0A166IYK3_9AGAM4.940e-538.64WD40 repeat-like protein n=1 Tax=Peniophora sp. CO... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11171contigC-tenellus_contig11171:4794..5060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4641.GSMUA_Achr8P28630_001
PFAMsWD40
Model size267
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007049,GO:0008092,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0015629,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016905,GO:0017022,GO:0017076,GO:0018107,GO:0018193,GO:0018210,GO:0019538,GO:0022402,GO:0022411,GO:0030029,GO:0030036,GO:0030554,GO:0030863,GO:0030864,GO:0031033,GO:0031035,GO:0031037,GO:0031038,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045159,GO:0046777,GO:0051301,GO:0061640,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0099568,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903047
Exons1
Evalue7.4e-06
EggNOG OGsKOG4155@1|root,KOG4155@2759|Eukaryota,37MNG@33090|Viridiplantae,3GC1A@35493|Streptophyta,3KV7N@4447|Liliopsida
DescriptionWD domain, G-beta repeat
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.8562932-CDS-C-tenellus_contig11171:4793..50541680789166.8562932-CDS-C-tenellus_contig11171:4793..5054Choristocarpus tenellus KU2346CDSC-tenellus_contig11171 4794..5054 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.8657851-UTR-C-tenellus_contig11171:5054..50601680789166.8657851-UTR-C-tenellus_contig11171:5054..5060Choristocarpus tenellus KU2346UTRC-tenellus_contig11171 5055..5060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11171.2.1prot_C-tenellus_contig11171.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11171 4794..5054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11171.2.1

>prot_C-tenellus_contig11171.2.1 ID=prot_C-tenellus_contig11171.2.1|Name=mRNA_C-tenellus_contig11171.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=87bp
MGAVMSVALATPGGGTLVTGSYDGYVRVFFNALPPRKPPRHRPVAGAAEA
LVLGRHKEGVRAVAVSEDGRWVVSGCRGGIINIWETP
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mRNA from alignment at C-tenellus_contig11171:4794..5060-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11171.2.1 ID=mRNA_C-tenellus_contig11171.2.1|Name=mRNA_C-tenellus_contig11171.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=267bp|location=Sequence derived from alignment at C-tenellus_contig11171:4794..5060- (Choristocarpus tenellus KU2346)
AAGGAGATGGGTGCTGTGATGAGCGTCGCTCTTGCCACCCCTGGTGGTGG
CACCCTTGTGACGGGCTCCTACGACGGTTATGTCCGTGTCTTTTTCAATG
CCCTACCTCCCCGAAAGCCTCCCAGACATCGCCCTGTGGCTGGGGCTGCT
GAGGCACTAGTGCTCGGCCGGCATAAGGAGGGTGTCAGGGCCGTGGCAGT
CTCTGAGGATGGCCGCTGGGTGGTGAGTGGGTGCCGGGGCGGGATCATAA
ATATCTGGGAGACACCA
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Coding sequence (CDS) from alignment at C-tenellus_contig11171:4794..5060-

>mRNA_C-tenellus_contig11171.2.1 ID=mRNA_C-tenellus_contig11171.2.1|Name=mRNA_C-tenellus_contig11171.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=261bp|location=Sequence derived from alignment at C-tenellus_contig11171:4794..5060- (Choristocarpus tenellus KU2346)
ATGGGTGCTGTGATGAGCGTCGCTCTTGCCACCCCTGGTGGTGGCACCCT
TGTGACGGGCTCCTACGACGGTTATGTCCGTGTCTTTTTCAATGCCCTAC
CTCCCCGAAAGCCTCCCAGACATCGCCCTGTGGCTGGGGCTGCTGAGGCA
CTAGTGCTCGGCCGGCATAAGGAGGGTGTCAGGGCCGTGGCAGTCTCTGA
GGATGGCCGCTGGGTGGTGAGTGGGTGCCGGGGCGGGATCATAAATATCT
GGGAGACACCA
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