mRNA_C-tenellus_contig11163.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11163.1.1
Unique NamemRNA_C-tenellus_contig11163.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11163.1.1 vs. uniprot
Match: D7FL73_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL73_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.300e-26
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 3 
Query: 1536 SIMSSRGPPFYELSFSVIAPVGHGEVVQVCGSCPTLGCMDPSRALSMETDPTNYPKWTSASVAMPLDQAVTYRYCVSSGGEFNRWEDAS 1802
            SIM +R PP YELSF+V A +GHGEV+ VCGSCP+LG  DPSRAL + TDP++YP W+S  V +PL++ VTYRYCV +GG+  RWED S
Sbjct:    8 SIMPTRPPPAYELSFAVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSGPVPVPLNKKVTYRYCVVAGGKLKRWEDIS 96
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BLAST of mRNA_C-tenellus_contig11163.1.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 118 bits (296), Expect = 5.620e-24
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 3 
Query: 1551 RGPPFYELSFSVIAPVGHGEVVQVCGSCPTLGCMDPSRALSMETDPTNYPKWTSASVAMPLDQAVTYRYCVSSGGEFNRWED 1796
            R PP YELSF V A +GHGEV+ VCGSCP+LG  DPSRAL + TDP++YP W+S  V +PL Q VTYRYC+ +GG+  RWED
Sbjct:    3 RPPPAYELSFGVEAKLGHGEVIYVCGSCPSLGSKDPSRALRLVTDPSSYPVWSSEPVPVPLGQKVTYRYCIVAGGKLKRWED 84
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BLAST of mRNA_C-tenellus_contig11163.1.1 vs. uniprot
Match: A0A6H5L492_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L492_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.100e-10
Identity = 41/83 (49.40%), Postives = 47/83 (56.63%), Query Frame = 3 
Query: 1572 LSFSVIAPVGHGEVVQVCGSCPTLGCMDPSRALSMETDPTNYPKWTSAS-VAMPLDQ--AVTYRYCVSSGGEFNRWEDASQLR 1811
            LSF VIA VG GE V VCG  P LG  DP RAL + T P +YP W S   +  P     A  +RYCV  GG F+RW+   Q R
Sbjct:    9 LSFRVIARVGKGEQVMVCGDAPCLGSGDPERALPLFTTPADYPLWFSKEELPRPAGSKTAHDFRYCVYRGGRFHRWDAVEQPR 91
[Close]
BLAST of mRNA_C-tenellus_contig11163.1.1 vs. uniprot
Match: D7G011_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G011_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-6
Identity = 36/71 (50.70%), Postives = 40/71 (56.34%), Query Frame = 3 
Query: 1572 LSFSVIAPVGHGEVVQVCGSCPTLGCMDPSRALSMETDPTNYPKWTSAS-VAMPLDQ--AVTYRYCVSSGG 1775
            LSF VIA VG GE V VCG  P LG  DP RAL + T P +YP W S   +  P     A  +RYCV  GG
Sbjct:    9 LSFRVIARVGKGEQVMVCGDAPCLGSGDPERALPLFTTPADYPLWFSKEELPRPAGSKTAHDFRYCVYRGG 79
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL73_ECTSI3.300e-2662.92Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
V5K3Y9_SACJA5.620e-2463.41Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
A0A6H5L492_9PHAE1.100e-1049.40GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G011_ECTSI1.040e-650.70Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11163contigC-tenellus_contig11163:551..3001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G011
PFAMsCBM_20,Glyco_transf_20,Trehalose_PPase
Model size1814
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.21e-10
EggNOG OGsCOG1877@1|root,KOG1050@2759|Eukaryota
EC2.4.1.15,3.1.3.12
Descriptiontrehalose biosynthetic process
Cds size273
COG categoryG
CAZyGT20
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.436461-CDS-C-tenellus_contig11163:550..8231680789166.436461-CDS-C-tenellus_contig11163:550..823Choristocarpus tenellus KU2346CDSC-tenellus_contig11163 551..823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.4515944-UTR-C-tenellus_contig11163:823..20431680789166.4515944-UTR-C-tenellus_contig11163:823..2043Choristocarpus tenellus KU2346UTRC-tenellus_contig11163 824..2043 -
1680789166.4640758-UTR-C-tenellus_contig11163:2680..30011680789166.4640758-UTR-C-tenellus_contig11163:2680..3001Choristocarpus tenellus KU2346UTRC-tenellus_contig11163 2681..3001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11163.1.1prot_C-tenellus_contig11163.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11163 551..823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11163.1.1

>prot_C-tenellus_contig11163.1.1 ID=prot_C-tenellus_contig11163.1.1|Name=mRNA_C-tenellus_contig11163.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=91bp
MSSRGPPFYELSFSVIAPVGHGEVVQVCGSCPTLGCMDPSRALSMETDPT
NYPKWTSASVAMPLDQAVTYRYCVSSGGEFNRWEDASQLR*
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mRNA from alignment at C-tenellus_contig11163:551..3001-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11163.1.1 ID=mRNA_C-tenellus_contig11163.1.1|Name=mRNA_C-tenellus_contig11163.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2451bp|location=Sequence derived from alignment at C-tenellus_contig11163:551..3001- (Choristocarpus tenellus KU2346)
CCTACACCTCCAGTGATTCAAAGATGAGACACGATAGGATATGAAAAGAC
TCGCGATTAAGTCATCACTATCATCTCTTTATGCGGAATTTTGTATTGAT
GATGTAAGTTACATCATTCCTAACAAAAGAAAGCACAGTGCTGGCATTCC
GCGCGCTCGTTTTTCGCGCACAAGGACCTTAGGGTGCACTACCATAGCAT
AGATGGTTTGACGCCTTTCACCGCTGTATCTCGGACAAGCCCGAAAAACG
TCGCTGGGGGCTGACGATTAGGAATTCACCTCTTTAGTTCCCTCCACTCT
GGGCAAGGAGGTCCTTACATGGTGAGCTATTCTCTGTCGCGATTGAGATG
CCTCCTATTGAGGTGGTTGTCTCTTCTAGTCGTGATGGTGCATACTCGTA
GAGCTCGGTCCTGTGCAGTCCTGCAGCGGGTGCGAGGGACAGGAGATGTG
GTGGAAATTTCCATATGCCACGCGTTGCAGTCACAACATCGTAGTTGTCA
AGAGGTGGGGGGTAGTGGCGGTATAGTTACCTCTTGTCAGCGGACCTTAT
TCCAACCTGCGTGTTGGTCTCCGTTTGGCCGGGAATCACCCTACGGACCG
TCGAGGGTAGTTTTGGGGTCGTCCTGAGGATGATTAAATGCACATGAACT
CGGAAAGCGTTTGCCCAATCCTTGCTATTACGCCACTGATCCTTCGGTTC
CCCCTACCATTGCAACTCTCACTCCTAGTTCAACCCCCGAGAAAACCCCA
GTTCCCGCAGTGTCGTTTGTAACCCCAAATGTACATAACTCGTTCTACCC
GAAAGTACTGCCTATATAAGAAAATATATGATCTGCTTGATCTCCAACCC
CCCCCACTCCTTGTCTCCCTCTTCCTTCCAACCCAATGGAATCTCGGGTA
CCATTTCCTCCTTCCTTGGTTCCTGCCACCCTTACCCATCTCCCTCTCCC
TTGACAAGCCAGACAGTACCAGAGTGGGCTGTGGATAACAAGGAGTAGAA
GTAGAGCCTTTCTCGACCCTGTACACGACGGTGCAGGGCGGTTGGAACGG
TTATCGGGGCGGCAGGTTGTCCGTGATGAGACCGTGTACCAGCCCAGGCT
GAGGACGTGCCTTGAGGGCCCTGAAAGGGCCGGGGCCCAAACTCACCCCC
GACCCCTACTTGCTACCCCCTGACCAGGTTTAGGGTCTATAAGGGAAAGA
AAAGTTGTTTGTTCCTCCGTAGCCCGCGAAGAGTTTTGGAGACTGTTGAG
AGTAGACAATCGCGACCCAAAACGTACCCGAACCAGTCGCAGCCTCCTAG
AGGCTCACGACATCCACACCTCTGGTCTACCTGTGAAAGGTTTCCCGAGT
TGTCATCTGTCCTGCTTATTTGGATAAGAGAGGGTCACTGGAGGGTGGGT
GACCCGAAGTAGGGGAAGGTGGTATTTTGCTGTAGAGATTAATCTCTCGG
ACTTCTTCTTCTTCTTTGTTGAGAACACATCTGTTTCTTACTTTTTCACA
CAACAAGAAAAAGATAAAAGTGACCGTACAGAGAGAAGAAGGCGATAAAC
TTTATTTTCTGAGTGGAAGAAATTATTTTCATCGTCCAGAGACAGCCGGT
AGAAAGGAGAGGAGGAACCAAAGACTCTTGGCAGGAAGGGGCGAGTGGGA
GGGAAAAGAAGTTATCGGAGTGTGTTCGTTGGGTTTAGTACCACAGAGAC
TGAGGAATCTCAGACCAGTCGTGTGCACGAGCACCTCGGACATAAAAGCG
ACTGGTGTTGTTCTGGGAGGGTGGTCATTCATTCTTGAGACTTTCCTTCC
TTCCTTCCTTTTCACTCTTCCTGGTTGAAGATCAAATCGAGACTTGGATT
CAGCGTAGATCGGAAGTGGGAGGGGAGGGTCGGTCTTCCGGTGGCCTTTC
GAGGTAAGATAAGAGACAAGAAAAGAAAAGACAAGACAAGACAAGACAAG
ACAAGACGGTGAGGCAGAGATCGGCGGATCGAATCTGATCTGATCGGATC
GGATCGGATCGGATCGTTTTTTGTTTTTGTTTTTGTTTTGGGGAGTGTGT
GTGCTTACGGCGGTAGGCTGCGCGAAGAAAGAAAGAAAAAAAAGAAGGAA
AAGACGGCGACTTCTGAGGAAAAAATAAAAAACAAAAAGGAGGCTCCGTC
GAACGCCGCCGCTCCGGACGAGTCGATCATGTCGTCTAGAGGGCCGCCGT
TCTATGAGCTGTCCTTCAGCGTCATCGCCCCCGTGGGACACGGGGAGGTG
GTGCAGGTGTGCGGGTCGTGCCCCACGTTGGGATGCATGGATCCGTCGCG
GGCCCTCTCCATGGAGACAGACCCGACCAACTACCCCAAGTGGACTTCAG
CCTCTGTGGCCATGCCGCTGGACCAGGCGGTGACGTACAGATACTGCGTA
TCGTCAGGTGGAGAGTTCAATCGATGGGAGGATGCCTCCCAGCTCAGGTG
A
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Coding sequence (CDS) from alignment at C-tenellus_contig11163:551..3001-

>mRNA_C-tenellus_contig11163.1.1 ID=mRNA_C-tenellus_contig11163.1.1|Name=mRNA_C-tenellus_contig11163.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=273bp|location=Sequence derived from alignment at C-tenellus_contig11163:551..3001- (Choristocarpus tenellus KU2346)
ATGTCGTCTAGAGGGCCGCCGTTCTATGAGCTGTCCTTCAGCGTCATCGC
CCCCGTGGGACACGGGGAGGTGGTGCAGGTGTGCGGGTCGTGCCCCACGT
TGGGATGCATGGATCCGTCGCGGGCCCTCTCCATGGAGACAGACCCGACC
AACTACCCCAAGTGGACTTCAGCCTCTGTGGCCATGCCGCTGGACCAGGC
GGTGACGTACAGATACTGCGTATCGTCAGGTGGAGAGTTCAATCGATGGG
AGGATGCCTCCCAGCTCAGGTGA
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