mRNA_C-tenellus_contig11133.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11133.1.1
Unique NamemRNA_C-tenellus_contig11133.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11133.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11133contigC-tenellus_contig11133:66..3460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size792
Hectar predicted targeting categoryother localisation
Exons5
Cds size789
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789165.328793-CDS-C-tenellus_contig11133:67..2021680789165.328793-CDS-C-tenellus_contig11133:67..202Choristocarpus tenellus KU2346CDSC-tenellus_contig11133 68..202 -
1680789165.33808-CDS-C-tenellus_contig11133:1213..12831680789165.33808-CDS-C-tenellus_contig11133:1213..1283Choristocarpus tenellus KU2346CDSC-tenellus_contig11133 1214..1283 -
1680789165.3493896-CDS-C-tenellus_contig11133:1668..18651680789165.3493896-CDS-C-tenellus_contig11133:1668..1865Choristocarpus tenellus KU2346CDSC-tenellus_contig11133 1669..1865 -
1680789165.3587074-CDS-C-tenellus_contig11133:2412..25201680789165.3587074-CDS-C-tenellus_contig11133:2412..2520Choristocarpus tenellus KU2346CDSC-tenellus_contig11133 2413..2520 -
1680789165.3677325-CDS-C-tenellus_contig11133:3181..34601680789165.3677325-CDS-C-tenellus_contig11133:3181..3460Choristocarpus tenellus KU2346CDSC-tenellus_contig11133 3182..3460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11133.1.1prot_C-tenellus_contig11133.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11133 68..3460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11133.1.1

>prot_C-tenellus_contig11133.1.1 ID=prot_C-tenellus_contig11133.1.1|Name=mRNA_C-tenellus_contig11133.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=263bp
GTGGDTGSSDARGAVSKGRRSGRIREDKEREDNLGSGGGGAGGAIPPGSA
LLFQESQELEVDVDVEEEDDGWEERDEEVSEDESELREMHELQVEAGLDN
FDTWGGVAPRVQAPSKQPHGRSEDSSDGQGWPRHTGGSASASKSGSPTER
ADEEGTGVGMSGGGNRRKQWDVPTRLGREEHLADFPTLGGAKMPRGMDLS
GSQLSMEDFTTYPGNSGQVEGESSSLDMPPLPSKQLGPVGATTTSSSTRR
GGGGGGGSGGERN
back to top

mRNA from alignment at C-tenellus_contig11133:66..3460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11133.1.1 ID=mRNA_C-tenellus_contig11133.1.1|Name=mRNA_C-tenellus_contig11133.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3395bp|location=Sequence derived from alignment at C-tenellus_contig11133:66..3460- (Choristocarpus tenellus KU2346)
GGCACTGGTGGGGACACGGGAAGCAGTGATGCTCGTGGGGCAGTATCGAA
GGGAAGAAGGAGTGGACGTATTAGAGAGGATAAGGAAAGAGAGGATAACT
TGGGGTCAGGGGGAGGCGGAGCAGGGGGTGCTATCCCTCCTGGTTCTGCG
CTGTTGTTTCAAGAGAGTCAGGAGTTAGAGGTGGATGTGGATGTGGAAGA
GGAAGATGATGGGTGGGAGGAGAGGGATGAGGAGGTTTCTGAGGATGAGA
GCGAGTTGAGGGAGATGCATGAATTGCAGGTCAGCTTGGGGTGTGGTGAT
ACTATCGAGAGGTTTGGAATGCACTTAGGTAGATAGATGGTGGGTGTGTA
GGTGGGGGGGGAAGGGGTGAGAGTTGGGAAGTGAAATGGAGTTTGGTGTG
TGTGCGGAATCTGCATGGCTACCCGGATTCTCTGGTATTGGTTTTGGCAC
CCGCTGTTAACATAGAGGTTGCTTTCACATTGTGGTTATGCTGGTGGCAA
GTTCTGAGGGCCTTTGAAAGGTTCCTCCCCCCCTCACCCCCATGCCTTAT
TTATATGTTTCTGTCTGTTTATGTGCTCTATTTCAAGCTTGTATGGATTC
AATATTATGTTTTTTTGTTTTTTTTTCAAGATACACGTTACCGCAAGAGC
AATGCAACCTGCTTGACCAATAAGAGTACGTTTTGAGGCAAGAGGTTGCT
TCCTCGCCCCAAAGGTTAGGTTATTGTTTTTGTTGCTGATATGGTGGTTG
ACATGCATGAGATGGTTACTTTATTGATATTTACTTTTTTTTATGGGTAT
TATTGACCTCCTACACCCCTGGTGCCTGGTAGAAAGTAAAGTGACTGTAG
TTGACTGCCTGCTCATTACATACGCGTTCATTTGTCAAGGAGCGTTTATC
GTCCCAACACCATGTTACTCCCATTTGAATCTCACACTAGGTGGAGGCGG
GCTTGGACAACTTCGATACTTGGGGAGGGGTAGCACCACGGGTTCAAGCC
CCGTCCAAACAACCACATGGCCGTTCTGAGGATAGCAGTGATGGACAGGT
GGGCGTTATTAAGGATGTGGTTGTTGTACTTGGGAGGGGGGGGGGAGGCA
TCTCTACTGTTACAATGCTTCTTGCCTATCCAAATCCCTTCATTTCCGGG
AGATACAGATTTCTGATGTTAGAGAGGTGTTAGAGAGGTGTGTATGTCTT
TGTTGCCCCTCAAGTATCTCTTGTTGACTTTGACACTCCTCTTGGTGGTT
GAGGCTGTAATATATTCGTGAGTTCTTTCTTGAATTGGTGTAGACTGTTG
GATGGAGTGATACATTGCGCTAGGACTGAACCCTCTCACCTGATGCCCGA
TTTGTGTGTGTGTGTGTGTGTGTGTGCGTCTTGCTATGTAGAAGAACAAT
TTCTTTGCTTTCTTTTTTTTCTGTGGAGAATTCTTGGAACGTTTTATGTC
AAAAAATTCAAACACACTGCGGTACACAATACAATTTTTTTGTTTTGTTT
CCTGGCCCCGTAATCATTTTTTTTGTTTTGCTCACTCTTCCCTCCCCCCC
CAATTTCATCTCTCCATGTCCCTGTTACCCTATCCTCTGAAGCAGGGATG
GCCAAGGCACACTGGAGGGTCTGCTTCAGCCTCTAAGTCAGGCTCCCCCA
CAGAGAGAGCAGATGAGGAAGGAACAGGGGTAGGGATGAGTGGTGGGGGG
AATAGGCGAAAGCAATGGGATGTACCAACACGCCTGGGAAGGGAAGAACA
CCTGGCAGACTTCCCGACCCTTGGTGGGGCAAAGATGCCAAGGTGTGTTT
GTGTTTGAGGTGTGCTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGT
TGTGTGTGTTGCATGTGTTTGAGAAATGGGGAGCTTTTTTTTTAGTCATG
AGTGTGTGGGTGCATAGATTGTGACTAGGTGCTGGGGGGAGAGTGGAGGC
TAAAGTCATGGAGTGCCTGTAGTGTGAAGTGAAAACTTTGTGGCCTGTGC
TTTGTGGTGTATGGTTTTGTGAAATTTACCAAGTCATTCGGTGTATGAGT
ATGACAACATGTATGACAACATATAATACTATTAATACTTGATGTTGGTT
AATGTATAGGTTGGTTGGTGTTGAAACTGTTACAAGCCCCTCCTTGGCTT
CTGAACATGATTTTGATTTGTCTACAGGGGGATGGATTTGTCTGGAAGTC
AACTGAGCATGGAGGATTTCACAACATATCCTGGAAACAGTGGGCAGGTA
AGATTATTACGATTATTTCTTATTATTATTACTATTATTATTATTGACTT
TGCGCTAGTCTGAGCCGTCCCAAATCTGTATTAAAAAATTAGAGGAAAAG
CGACAATACTAGAAAATAATGTACTACAATATTGTATTTATAATAGTATA
CAACAAAAAGTATATTATTTATAAGAACGAAAAGCTAAAACTCAATTTGG
GTGAGAATTATACCTCCATGTGGCAACGGATGATCTCTGCAAAGAACATG
TTTTTTGTCTGGGTACATACATTACTATCACTGCCTAATATATATTTTTT
ATTGATTGTAACGATAAATAAGAGACATACTAATTTTTGTTGGTTCGTGG
GTACAATAGAGTTGGTTGAGAGGAAGGCGTTTCTGGGATAATGTAGTGAA
TAATATAGGAGTGAAGTGGTGATGTGCTGTTGGAAAGGAGACTGACGGAG
ATGGAAACGGAGAGTTGCTGCGTTTGGAATGAGAGTACTTACATAACATT
TTTTGAGGGAGTGGTAGTGCCTGGATGGAGTTGGGTGTGGAATGAAACTT
GTCTTTAGTATCCGCCCAACCCCTCCCCAACCTGAAGGGAGTCCTCCTGC
ATATTAAGGCAGTGCTAGGTGTTTGTATGCTCAGGTTTGTTCTGTGCTAG
AATGTAGGGCAGCTTTGTTGAATTGGAGGGGTGGCCCTCACTACACCTCT
TTCTTTCATCTGTCCCCTAACCCTAACCCCATCCTCCTGTCTAGCTTCCT
AACCCTATCCCCCAGCGTGTTTCCCACTCTTTCATCCTTGGAGTCATCCT
TGGAGTCATCCTTGGAGTCATCCTTGGAGTCATCCTTGGAGTCATCCACA
AGCTCCCAACACGTATCGATTCTCGCGCCATCCTTGTGTACATCACCCCT
ACTGGTTCACCTGCTGGAATCCCCTCTCGGCCTTGCATCATGTGCCTATG
AACTTGAACAAAACATGCCTTCCTGTTGTTCTTACCTATCATTTATCATT
TATGGCAGGTGGAAGGAGAGTCTTCCTCCCTGGATATGCCTCCTCTACCC
TCCAAGCAGCTTGGACCTGTAGGAGCAACAACCACATCCTCCTCCACCCG
ACGAGGAGGAGGTGGGGGTGGGGGCAGTGGGGGAGAGCGCAATCC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11133:66..3460-

>mRNA_C-tenellus_contig11133.1.1 ID=mRNA_C-tenellus_contig11133.1.1|Name=mRNA_C-tenellus_contig11133.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=789bp|location=Sequence derived from alignment at C-tenellus_contig11133:66..3460- (Choristocarpus tenellus KU2346)
GGCACTGGTGGGGACACGGGAAGCAGTGATGCTCGTGGGGCAGTATCGAA
GGGAAGAAGGAGTGGACGTATTAGAGAGGATAAGGAAAGAGAGGATAACT
TGGGGTCAGGGGGAGGCGGAGCAGGGGGTGCTATCCCTCCTGGTTCTGCG
CTGTTGTTTCAAGAGAGTCAGGAGTTAGAGGTGGATGTGGATGTGGAAGA
GGAAGATGATGGGTGGGAGGAGAGGGATGAGGAGGTTTCTGAGGATGAGA
GCGAGTTGAGGGAGATGCATGAATTGCAGGTGGAGGCGGGCTTGGACAAC
TTCGATACTTGGGGAGGGGTAGCACCACGGGTTCAAGCCCCGTCCAAACA
ACCACATGGCCGTTCTGAGGATAGCAGTGATGGACAGGGATGGCCAAGGC
ACACTGGAGGGTCTGCTTCAGCCTCTAAGTCAGGCTCCCCCACAGAGAGA
GCAGATGAGGAAGGAACAGGGGTAGGGATGAGTGGTGGGGGGAATAGGCG
AAAGCAATGGGATGTACCAACACGCCTGGGAAGGGAAGAACACCTGGCAG
ACTTCCCGACCCTTGGTGGGGCAAAGATGCCAAGGGGGATGGATTTGTCT
GGAAGTCAACTGAGCATGGAGGATTTCACAACATATCCTGGAAACAGTGG
GCAGGTGGAAGGAGAGTCTTCCTCCCTGGATATGCCTCCTCTACCCTCCA
AGCAGCTTGGACCTGTAGGAGCAACAACCACATCCTCCTCCACCCGACGA
GGAGGAGGTGGGGGTGGGGGCAGTGGGGGAGAGCGCAAT
back to top