mRNA_C-tenellus_contig11130.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11130.2.1
Unique NamemRNA_C-tenellus_contig11130.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11130.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11130contigC-tenellus_contig11130:600..2532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1266
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_001360.1
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789165.1970015-UTR-C-tenellus_contig11130:599..14551680789165.1970015-UTR-C-tenellus_contig11130:599..1455Choristocarpus tenellus KU2346UTRC-tenellus_contig11130 600..1455 -
1680789165.2391396-UTR-C-tenellus_contig11130:2350..25321680789165.2391396-UTR-C-tenellus_contig11130:2350..2532Choristocarpus tenellus KU2346UTRC-tenellus_contig11130 2351..2532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789165.210699-CDS-C-tenellus_contig11130:1455..15171680789165.210699-CDS-C-tenellus_contig11130:1455..1517Choristocarpus tenellus KU2346CDSC-tenellus_contig11130 1456..1517 -
1680789165.2199776-CDS-C-tenellus_contig11130:1984..20231680789165.2199776-CDS-C-tenellus_contig11130:1984..2023Choristocarpus tenellus KU2346CDSC-tenellus_contig11130 1985..2023 -
1680789165.22891-CDS-C-tenellus_contig11130:2223..23501680789165.22891-CDS-C-tenellus_contig11130:2223..2350Choristocarpus tenellus KU2346CDSC-tenellus_contig11130 2224..2350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11130.2.1prot_C-tenellus_contig11130.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11130 1456..2350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11130.2.1

>prot_C-tenellus_contig11130.2.1 ID=prot_C-tenellus_contig11130.2.1|Name=mRNA_C-tenellus_contig11130.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=76bp
MAIYALKDNNQPVCLYSFFAVQGKPSRKHARLWDNLVADLSNGGGDCEMS
TLSDKASVTMPLGQKVSKEEVRDER*
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mRNA from alignment at C-tenellus_contig11130:600..2532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11130.2.1 ID=mRNA_C-tenellus_contig11130.2.1|Name=mRNA_C-tenellus_contig11130.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1933bp|location=Sequence derived from alignment at C-tenellus_contig11130:600..2532- (Choristocarpus tenellus KU2346)
AGTGCATTGATCAAGAATCCCGTCCGACTTCACCACATCCTCTCATCACA
CACGAAATTATCCAAAAAGGATCATCCAGCTCTTACTTGGTCCAAACATT
ATTTTTCCCCCCTCCCCATATCCTCTCTATTCTACAGTCTCTAACAGTAA
TCTGCTGCGATTACCCAATTCTTTCTAGTTCGATGGCCATATATGCTTTG
AAAGACAACAACCAACCCGTTTGCCTGTACTCGTTCTTCGCGGTACAGGG
GAAACCTTCCAGAAAGCATGCTAGATTATGGGACAATTTGGTCGCAGACT
TGTCCAACGGTGAGATTATAGGTGATGTACAGTATTGTTAGGTTAGAGGG
AAAAGATATTCCCGAAGCTTTCAAACAATGGTAGTTGAAATGAGTCCAAA
CATGAGGTTTTCTAATAGGTCTGTATGGGGAACATGGCCAGCTTCTCTGA
CTCTATAGGTCGTTCCAGAGTGACCCTTCCCTCTCACCTCTTTGACCCCT
TTCGCCCAGGTGGTGGAGACTGTGAGATGTCAACATTGTCAGACAAAGGT
AAGTGGATGCACTCATAAAATGGTGTAGGACGAAGGAAGGGATTGAAAGT
CTCTCGCAAACAAACATTCCCTAGGTTTGGCCATGGGCAACAGTTGAAGA
TCAAAGAGGCAGCTTGAAATCTCTCTTTTGGCCTTACCCTTGTAGAACGG
AGTCGGAATTTGAACGTACACGTACCTGGAAAAAAGGTAGCGGTCACAGC
AGAAGCTATAACTTAAAGGTTGCAATGACGAAGAACGTTGATGCGCATGG
GTTCATCCATGACCTACCCCAACCCAATAGGTGTGTGGTGTTTTGCAAGT
CCCAGTAAAACCATTCAAAATGATTGATTCATTTGTACGCATGTCCATCG
ATGCCTTCAAATTATTAGATTGCTCTATCGAACATCCGATAAGCGTATCA
CAAATCCGTTCAATCCTATCTTTCGCCCTGCGCTCGTTTTCCCCCTTCTT
TGTATCGACTGGCAGCGTCAGTCACGATGCCCCTTGGCCAGAAAGTCTCC
AAGGAAGAGGTGAGAGATGAGAGGTGAGCGGAGCGACAGTGAGTAGAATG
CAAAAGTGAGAGCATGGACAAAGCAACAGGGCGACGGTACTGGACCCAGC
AGGGAAGCCATGTGCTGTCTTTGACTCTCAGGCAATATCAAAATGTTTCG
ATTTATGAATTTTCATATATTGTGGCCACAGTGGGCATAGAATAAGGATA
AATCTAGTGTGTGGTAAGGTGCACTTCCACAACTTGTTCTATGAAGGATT
CAATTTGTACCCGTTTTGTTCCTACCTGATTCTATTCAACAGAACCAGAA
AAAAAATTGTTTTGTGCTAGCTTCTGGTTAAGATGATGAGTCAGTTGGGT
AATCCAGGAACTCTTGTCTTGGAAGAGGGCTGTTTCGGTGAACTTCAACA
ACAGAAAGTAGAGAATGTTCAAGGCCAGGGCTTGTCGTATTCATCCTGCA
TGTGGACCTATGGTACGATCAACCACAAGGTTGTTATTCAGGCTGGGCAC
AACTCGTTGCCCACACCTGTTCTGCACAAGTTTTGGGCATATTGGATTTG
ACTACACTGTCCATTATGAGACCAGAACATGAACTTGTGTGGAATTAGCA
GAGAGAGTGCTATTGTGTTACTCTTTGGCTCACAAAGGTCTGGGTAAAAT
TATACAGAGATGATAGCCCATATTTGTACTGCTGTAGATGGGGGAGGGTG
GGGGTTCTAAGTATATGTTTTTCATTAACCCCAAATTGAACACTGATTCA
GCCCTTATCACGTCTTCCCCTGCTCAGCAGGAGCTCTGTATCGTCGTACA
AAATCATCTTGTGCCACAGTTGAAATGGTCAGATCATTGCAAGAAAATTG
ACTTTGACTGATCAAACTCACAAACAGTAGCAA
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Coding sequence (CDS) from alignment at C-tenellus_contig11130:600..2532-

>mRNA_C-tenellus_contig11130.2.1 ID=mRNA_C-tenellus_contig11130.2.1|Name=mRNA_C-tenellus_contig11130.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=228bp|location=Sequence derived from alignment at C-tenellus_contig11130:600..2532- (Choristocarpus tenellus KU2346)
ATGGCCATATATGCTTTGAAAGACAACAACCAACCCGTTTGCCTGTACTC
GTTCTTCGCGGTACAGGGGAAACCTTCCAGAAAGCATGCTAGATTATGGG
ACAATTTGGTCGCAGACTTGTCCAACGGTGGTGGAGACTGTGAGATGTCA
ACATTGTCAGACAAAGCGTCAGTCACGATGCCCCTTGGCCAGAAAGTCTC
CAAGGAAGAGGTGAGAGATGAGAGGTGA
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