mRNA_C-tenellus_contig11121.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11121.2.1
Unique NamemRNA_C-tenellus_contig11121.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A1X7SRH6_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SRH6_AMPQE)

HSP 1 Score: 58.5 bits (140), Expect = 4.880e-9
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    4 TRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGD 195
            TR DIA  +  VAKY+S+P V HW+AVK I+ YL      GL F   +T  E+  Y+DA +AGD
Sbjct:   83 TRPDIAFAVSSVAKYTSDPTVQHWKAVKHIIQYLTGTVGYGLMFHKKET-AEVEGYSDADWAGD 145
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A8H4VTR7_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4VTR7_9AGAR)

HSP 1 Score: 57.0 bits (136), Expect = 4.560e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    4 TRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADA 180
            TR DI   ++ V+++S NP V+HW AVK I  YL     + LS+GG  TE EL+ YADA
Sbjct:   41 TRPDITYAVQAVSRFSKNPGVSHWEAVKWIFRYLKGTKELWLSYGG--TEKELTGYADA 97
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BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A1X7STY0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7STY0_AMPQE)

HSP 1 Score: 57.4 bits (137), Expect = 4.910e-8
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 TRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGD 195
            TR DIA  +  VAKY+S+P V HW+AVK I+ YL      GL F    T  E+  Y+DA +AGD
Sbjct:  193 TRPDIAFAVSSVAKYTSDPTVQHWKAVKHIIRYLTGTVGYGLMFRKKKT-AEVEGYSDADWAGD 255
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 7.040e-8
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 MTRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYA 189
            +TR DIAN +R VA+YSS PK+ HW+A   IL Y     S+G+SF  G  +   L A+ DA YA
Sbjct:  547 LTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYA 610
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.220e-8
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 MTRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYA 189
            +TR DIAN +R VA+Y S PK+ HWRA   IL Y     S G+SF  G  +   L  +ADA YA
Sbjct:  176 LTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYA 239
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.510e-8
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 MTRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYA 189
            +TR DIAN +R VA+Y S PK+ HWRA   IL Y     S G+SF  G  +   L  +ADA YA
Sbjct:  480 LTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYA 543
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.340e-7
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 MTRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYA 189
            +TR DIAN +R VA+Y S P + HW+A + IL Y+    S+G SF  G  +   L A+ DA YA
Sbjct:  698 LTRPDIANSVRAVARYCSAPTLIHWKAARSILGYVVRASSLGTSFQRGTVSGSSLIAFVDADYA 761
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A6H5L7D7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.190e-6
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 MTRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYA 189
            +TR DIAN +R VA+Y S PK+ HW+A   IL Y     S+G+S   G  +   L A+ DA YA
Sbjct:  781 LTRPDIANSVRAVARYCSAPKLIHWKAALSILGYAVRTGSLGISIKRGTVSGFSLIAFVDADYA 844
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-6
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    1 MTRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSF-GGFDTECELSAYADASYA 189
            +TR DIAN +R VA+YS  PK+ HW+A   IL Y     S G+SF  G  +   L  + +A YA
Sbjct:  228 LTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYA 291
[Close]
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Match: A0A0C3PD59_PHLGI (Uncharacterized protein n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PD59_PHLGI)

HSP 1 Score: 52.4 bits (124), Expect = 3.010e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    4 TRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECE--LSAYADA 180
            TR DIA  + ++A+YS NP +THW A+K + AYL +     L+ GG D + +  L  Y+DA
Sbjct: 1102 TRPDIAYAVFQLARYSENPGITHWTALKRVFAYLKSTRDHWLTLGGDDVDLKAPLIGYSDA 1162
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11121.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A1X7SRH6_AMPQE4.880e-948.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H4VTR7_9AGAR4.560e-849.15Uncharacterized protein n=1 Tax=Agrocybe pediades ... [more]
A0A1X7STY0_AMPQE4.910e-848.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE7.040e-848.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWK8_9PHAE9.220e-848.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE9.510e-848.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKT4_9PHAE3.340e-745.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7D7_9PHAE2.190e-645.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE2.920e-643.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C3PD59_PHLGI3.010e-642.62Uncharacterized protein n=1 Tax=Phlebiopsis gigant... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11121contigC-tenellus_contig11121:4395..4589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4081.Solyc12g009540.1.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve,zf-CCHC
Model size197
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
DescriptionMitochondrial protein
Cds size195
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789164.4044344-CDS-C-tenellus_contig11121:4394..45891680789164.4044344-CDS-C-tenellus_contig11121:4394..4589Choristocarpus tenellus KU2346CDSC-tenellus_contig11121 4395..4589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11121.2.1prot_C-tenellus_contig11121.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11121 4395..4589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11121.2.1

>prot_C-tenellus_contig11121.2.1 ID=prot_C-tenellus_contig11121.2.1|Name=mRNA_C-tenellus_contig11121.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=65bp
MTRLDIANVIREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDT
ECELSAYADASYAGD
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mRNA from alignment at C-tenellus_contig11121:4395..4589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11121.2.1 ID=mRNA_C-tenellus_contig11121.2.1|Name=mRNA_C-tenellus_contig11121.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=195bp|location=Sequence derived from alignment at C-tenellus_contig11121:4395..4589+ (Choristocarpus tenellus KU2346)
ATGACCAGGCTTGATATTGCAAATGTAATTCGTGAAGTTGCCAAGTACAG
TAGCAATCCCAAAGTCACACATTGGCGTGCAGTGAAATGTATTTTAGCAT
ATTTAAATACGTGTCCCAGTGTTGGATTGAGTTTTGGTGGTTTTGATACT
GAGTGTGAGTTGAGTGCGTATGCTGATGCTAGTTATGCTGGAGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig11121:4395..4589+

>mRNA_C-tenellus_contig11121.2.1 ID=mRNA_C-tenellus_contig11121.2.1|Name=mRNA_C-tenellus_contig11121.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=195bp|location=Sequence derived from alignment at C-tenellus_contig11121:4395..4589+ (Choristocarpus tenellus KU2346)
ATGACCAGGCTTGATATTGCAAATGTAATTCGTGAAGTTGCCAAGTACAG
TAGCAATCCCAAAGTCACACATTGGCGTGCAGTGAAATGTATTTTAGCAT
ATTTAAATACGTGTCCCAGTGTTGGATTGAGTTTTGGTGGTTTTGATACT
GAGTGTGAGTTGAGTGCGTATGCTGATGCTAGTTATGCTGGAGAC
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