mRNA_C-tenellus_contig11113.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11113.2.1
Unique NamemRNA_C-tenellus_contig11113.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11113.2.1 vs. uniprot
Match: D7FRH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.910e-7
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:  258 LVARDQKDGRIVGYTTGFCLMGHTTTESEVVFRALFAKASFIHFEAGLAMPK 413
            LVARD  DG++VGYTTGF LMGHT  +S+ +F  +F ++S +H +AGL  P+
Sbjct:  223 LVARDA-DGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPR 273
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BLAST of mRNA_C-tenellus_contig11113.2.1 vs. uniprot
Match: D7FVW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.470e-5
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 3 
Query:  258 LVARDQKDGRIVGYTTGFCLMGHTTTESEVVFRALFAKASFIHFEAGLAMPK 413
            LVARD  +G++VGY+TGF ++GHT  +S+ +F  +F + S +H +AGL  PK
Sbjct:  223 LVARDA-NGKVVGYSTGFFMIGHTVAKSQDIFCYMFREGSKLHKQAGLPCPK 273
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11113.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRH6_ECTSI4.910e-753.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FVW9_ECTSI2.470e-548.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11113contigC-tenellus_contig11113:3123..5027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size496
Hectar predicted targeting categoryother localisation
Exons5
Cds size339
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11113.2.1prot_C-tenellus_contig11113.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11113 3411..4954 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789163.9180887-UTR-C-tenellus_contig11113:3122..32061680789163.9180887-UTR-C-tenellus_contig11113:3122..3206Choristocarpus tenellus KU2346UTRC-tenellus_contig11113 3123..3206 -
1680789163.9780416-UTR-C-tenellus_contig11113:4954..50271680789163.9780416-UTR-C-tenellus_contig11113:4954..5027Choristocarpus tenellus KU2346UTRC-tenellus_contig11113 4955..5027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789163.9295192-CDS-C-tenellus_contig11113:3410..35161680789163.9295192-CDS-C-tenellus_contig11113:3410..3516Choristocarpus tenellus KU2346CDSC-tenellus_contig11113 3411..3516 -
1680789163.9399512-CDS-C-tenellus_contig11113:3679..37291680789163.9399512-CDS-C-tenellus_contig11113:3679..3729Choristocarpus tenellus KU2346CDSC-tenellus_contig11113 3680..3729 -
1680789163.9531815-CDS-C-tenellus_contig11113:4202..42661680789163.9531815-CDS-C-tenellus_contig11113:4202..4266Choristocarpus tenellus KU2346CDSC-tenellus_contig11113 4203..4266 -
1680789163.9673874-CDS-C-tenellus_contig11113:4835..49541680789163.9673874-CDS-C-tenellus_contig11113:4835..4954Choristocarpus tenellus KU2346CDSC-tenellus_contig11113 4836..4954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11113.2.1

>prot_C-tenellus_contig11113.2.1 ID=prot_C-tenellus_contig11113.2.1|Name=mRNA_C-tenellus_contig11113.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=113bp
MKEGDVAGCAELFCAAHGSNDWDRSKSIAGRLNDMTPIPKAKLVLSSILW
ISTTAVITAVQTCCTRSERWAYCGIHYRVLPYGTHHNRVRGSLPCVVRQG
QLHPLRGWTCYA*
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mRNA from alignment at C-tenellus_contig11113:3123..5027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11113.2.1 ID=mRNA_C-tenellus_contig11113.2.1|Name=mRNA_C-tenellus_contig11113.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1905bp|location=Sequence derived from alignment at C-tenellus_contig11113:3123..5027- (Choristocarpus tenellus KU2346)
CCATTACATTGGGGGATTCCTGGACCCAGGGTTGGTTGCAGCAGAGGAAC
TGCCAGGAGTATCGATCACTCCCATGAAGGAAGGTGATGTTGCTGGGTGT
GCTGAGCTGTTCTGTGCAGCCCACGGATCTAATGACTGGGACCGTTCAAA
GTCAATTGCTGGAAGGCTGAATGACATGACACCGATCCCCAAGTAATCAT
CGTTCCTGATGCATTGAGTGAAGTGTATTTGAAATGCGCAGTAACCAGAA
CCAGACTGTTTCAAAAGAAAATATTCAATACCGCACAGTTTAGTATTATT
TGTGCAGATGAAAATAGTCCATGTTCGTGTTTATGTTCATGCTCACTTTT
GTGAAAAGCGTAGGATGCAAAGAGATAAGCTAATTCGTAGCCAAACACTT
TGCGCAGATGATTCAACTGCTTTCCGCTTACACCTGGTTAACCTCCGAGT
CAACTATCAGAAGAGATGTTCAATATCCGAATTTTCTCTGGTAGCTATCT
GATCAAAGTGATTGGTAACATTCCATTCTGAAGTTCAATAGTCAAGGCAT
TTAAGAGGGTAGGGCCGCATCTGTTTGGGGTCCAAAATCCAACGTTCTGA
TTTTGATATAATTTTGGCTATCGTGTTTGCTAGCATCAATATCCTTGCTC
CAGACACAGTTTTCATAGTGGTATATATTTTACCTACTCTGAAGTGTTTC
GAAAACCGAAAAGGGGCATAAAAAACCCTAACACTAAGCCAACCCCCGAA
CGGACAAACAGGGCAAAACTCGTACTGTCTTCAATTCTTTGGATCTCAAC
TACGGCAGTGATAACAGCAGTACAGGTAATCACTCAGCTTTCAATGGCAG
AGAATGCCAAATCGACCTGTAAGGAACAAGACTGTAATCAAGTCCACTAC
CTTTTTTCCCTTTGGGATGTTACTGGTGTATGCTATGAAATCTCGTATGT
TACTTTTGATTCTCCCTAAATGCCTGCAAGGAAACAAAAACGTCCAGCGC
AACAAGTCTAAGCATATGGAGCCATCGTGCTTTTTGTGCAGTTGAGTGTC
CCATTGGTCGTTGTTTTATTTTGTCCAAGCACTGCGGAATAAGATATTGC
TTTCCTGCGCACTTATGAGTCCAGTTGAACACCTGTGGTCCTCTGTGGAT
ACTTGTACTGATATGTATTGATGCAGTCCTATTTTCAACAGCAAATGAGT
GCCTGGGGTACTTCCTATTGACCACATCTCTCTGTTGGGTTACCTGACGC
CCTTCCCCCTTCCACTGGTGTGTGTCTCGCCCTCTTTGCCCTGCTTAGAC
TTGTTGCACGAGATCAGAAAGATGGGCGTATTGTGGGATACACTACAGGT
CAGCCAATAGTTCTTGTTGATGAATCCTATCCTAGCCATATTTTCTTTCA
AGACATGTGGCTAATGTATCCACTCAATCCTATCATACAAATCTTCTAGA
GAACTACTTAGTAGACTGAATGTCCTGTTGCTGTTACATAAAATACCCTA
CTCATTGGCAGGGTTCTGCCTTATGGGACACACCACAACAGAGTCAGAGG
TAGTCTTCCGTGCGTTGTTCGCCAAGGCCAGCTTCATCCACTTCGAGGCT
GGACTTGCTATGCCTAAGTAAGAAAAAGACCACGGTTCTTGGGTAAAAGG
TCATATACACACTCCTGACCTGAAGAAACGACTAGCCCACCAATGACTGA
AGAAAACTCTTACATCATTGAACAGACCCAACTTCTCAGTTTTCTTCATC
TGATTATTTTATCCTTCACGTAATAATCCTGACCCTTACGCCTTGAAATA
CATTTTCTTACATCCCCTCAGGTTCCATTGCCCACAAGAGTACCCAAATC
TTCTGTCCTGGGGACTAGAGCATGGTCTCACAGTCCTTCGCGCCACTACA
ATCAT
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Coding sequence (CDS) from alignment at C-tenellus_contig11113:3123..5027-

>mRNA_C-tenellus_contig11113.2.1 ID=mRNA_C-tenellus_contig11113.2.1|Name=mRNA_C-tenellus_contig11113.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=339bp|location=Sequence derived from alignment at C-tenellus_contig11113:3123..5027- (Choristocarpus tenellus KU2346)
ATGAAGGAAGGTGATGTTGCTGGGTGTGCTGAGCTGTTCTGTGCAGCCCA
CGGATCTAATGACTGGGACCGTTCAAAGTCAATTGCTGGAAGGCTGAATG
ACATGACACCGATCCCCAAGGCAAAACTCGTACTGTCTTCAATTCTTTGG
ATCTCAACTACGGCAGTGATAACAGCAGTACAGACTTGTTGCACGAGATC
AGAAAGATGGGCGTATTGTGGGATACACTACAGGGTTCTGCCTTATGGGA
CACACCACAACAGAGTCAGAGGTAGTCTTCCGTGCGTTGTTCGCCAAGGC
CAGCTTCATCCACTTCGAGGCTGGACTTGCTATGCCTAA
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