mRNA_C-tenellus_contig1110.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1110.5.1
Unique NamemRNA_C-tenellus_contig1110.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: D8LF06_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF06_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 2.080e-82
Identity = 140/211 (66.35%), Postives = 171/211 (81.04%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDK-----GVSSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVLCEPEREGV-AAGAESQS 615
            MDTLLGI G  FV++AADAQVA+SILLY+ N+DK+  L D+  +A AGPQSDC +FTEYI KN+ALYELNND++LTTKAAA F+RGELA+ALRKGPFQTQLL+GG+DK       +SLFW+DYLG++ KVPYGAHGYG+ FT SV D+EY K L+ +EAL II  CI ELHTRF I+QKNFVIK+VTAEGIKV+  P    + AAGA +++
Sbjct:    1 MDTLLGIAGEGFVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDNCIKELHTRFLIAQKNFVIKVVTAEGIKVVRGPPTPDLGAAGASAEA 211
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: A0A836CPT6_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT6_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.620e-67
Identity = 108/189 (57.14%), Postives = 149/189 (78.84%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGVSSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVL 567
            MD+L G+ G  FV++AADAQVA+SILLYQ +LDK+K L+   +MA AGPQ+DC  F EYIQKN+ALYELNNDL+L+TKAAA+++R ELA ALRKGP+Q  +L+GG+D G ++L+W+DYLG++  V YGA GYG+ FT S+ D+ Y+  + + +A+ +++ CI  LH RF I+Q NFVIK+V  +GI+VL
Sbjct:    1 MDSLFGVAGDGFVVLAADAQVARSILLYQNDLDKIKELDSHKMMALAGPQADCNLFGEYIQKNMALYELNNDLRLSTKAAANYIRRELATALRKGPYQVNMLMGGVDAGAAALYWLDYLGTLQPVKYGAQGYGAAFTLSLLDRSYRVGMAEADAVELVRSCIAALHKRFLIAQPNFVIKVVDKDGIRVL 189
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: A0A6V1PTT6_HETAK (Proteasome subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PTT6_HETAK)

HSP 1 Score: 211 bits (538), Expect = 5.940e-60
Identity = 104/188 (55.32%), Postives = 138/188 (73.40%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGVS-SLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIK 561
            MD L G+ G  +V++AADA   +SI++Y+++ DK+ PL+ + ++A AGP +D   F EYIQKNLALYEL NDL+L T A AHF+R  LA ALRKGP+QT LLLGG D+G    L+W+DYLG+M K+ +GAHGYGS FT S+FD E+++ L++ E L II+ CI EL TRF IS   FV KIV A G++
Sbjct:    1 MDALFGLKGDGYVMLAADANQGRSIIVYKSDYDKIMPLDSNKLLAQAGPNADTVNFGEYIQKNLALYELTNDLKLNTSATAHFIRRTLADALRKGPYQTNLLLGGKDEGKDPELYWMDYLGAMHKLNFGAHGYGSSFTLSIFDSEWREGLSEAEGLEIIRHCIAELRTRFLISMPKFVCKIVDANGMR 188
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: A0A6U4C0Y9_9STRA (Proteasome subunit beta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4C0Y9_9STRA)

HSP 1 Score: 211 bits (537), Expect = 3.380e-59
Identity = 99/190 (52.11%), Postives = 144/190 (75.79%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGV-SSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVL 567
            MD+ +G+ G  FV++AADA   +SIL+Y+ +LDK+ P++++ IMA+ GPQ+DC  F EYIQKN+ LYEL N + L+T  AA+F+RGELA+ALR+GP+Q  LLLGG  K   +SLFW+DYLG++ KV YGAHGY S F  S+ D  ++K LT+E+A+ +++KCI EL TRF I+   + +K+V +EG++V+
Sbjct:   44 MDSTIGMRGDGFVLLAADANAGRSILIYKQDLDKILPISENQIMATVGPQADCSVFGEYIQKNMRLYELENQINLSTFGAANFIRGELAKALRRGPYQVNLLLGGAAKDEEASLFWMDYLGTLQKVNYGAHGYASNFVLSLLDAHWEKGLTEEQAIEVLRKCIKELETRFMIALPKWSVKVVDSEGVRVI 233
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: W7TFQ9_9STRA (Proteasome subunit beta n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFQ9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.140e-57
Identity = 102/190 (53.68%), Postives = 142/190 (74.74%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMD-KGVSSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVL 567
            MDTLLGI G  FV++AADA  A+SIL+++T+ DK+  L+   ++A+AGP +DC   TEY+QKN+ALYE NNDL+L T AAA+F+R  LA ALRKGP+QT LLLGG D K  ++L+++DYLGSM KV +GA GY S FT S+FD+EY++ +T  EA  +++K   EL  RF ISQ  +++K+V  +G++ L
Sbjct:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: A0A7S2XJE8_9STRA (Proteasome subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 5.070e-57
Identity = 104/190 (54.74%), Postives = 136/190 (71.58%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNND-LQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGVS-SLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKV 564
            MDT+ G+     V++AAD   A+SIL YQ+NLDKV  L+    M  AGP SD   FT+YI KN  LYEL+ND +QL+T A A+F RGELA ALRKGPFQ  +LLGG D+GV  SL+++DY+G+M KVPYG  GY   F  SV D+++ K L + EA++I++KCI EL TRF ISQ NF+IK++  +G+KV
Sbjct:    1 MDTVFGVSYEGGVVIAADQSNARSILTYQSNLDKVTELSSHSAMGVAGPNSDLVNFTQYIAKNFKLYELSNDGMQLSTAAQANFCRGELATALRKGPFQVNVLLGGFDEGVGGSLYFLDYMGAMQKVPYGCQGYAGAFCLSVMDRQWTKGLDEAEAVAIVEKCIQELKTRFLISQPNFMIKVINKDGVKV 190
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: A0A7S3NPS0_9STRA (Proteasome subunit beta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPS0_9STRA)

HSP 1 Score: 203 bits (517), Expect = 5.770e-57
Identity = 103/190 (54.21%), Postives = 141/190 (74.21%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGV-SSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVL 567
            M+   G+ G +F IVA+D   A+SI++Y+ + DKVK L+D  ++ SAG  +D   FTEYIQKN+ALYE+++++ L+T+A A+F+R ELARALRKGP+QT LLLGG D  + +SL++IDYL S  KV +G HGY S F  S+FD+E+K+ LT+ EAL I++KCI EL TRF +S   FVIKIV A GI+ L
Sbjct:    1 MECTFGLVGQNFTIVASDRSAARSIVVYKQDEDKVKVLDDHKLLGSAGVSADSVAFTEYIQKNVALYEIDHNIALSTQATANFIRVELARALRKGPYQTNLLLGGYDADLGASLYYIDYLASSNKVNFGCHGYASNFILSIFDKEWKQGLTESEALEIVRKCIAELQTRFLVSLPEFVIKIVDANGIRSL 190
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: B7FVS5_PHATC (Proteasome subunit beta n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVS5_PHATC)

HSP 1 Score: 202 bits (514), Expect = 1.790e-56
Identity = 99/189 (52.38%), Postives = 137/189 (72.49%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGV-SSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKV 564
            MDT+ G+     VI+AAD   A+SILLYQTNLDKVK L     M  +GP  D   F E++ KN+ LYEL+ND++L+T A A+F RGELA ALRKGPFQ   LLGG D  V +SL+++DY+ ++ KV YG+ GY S F  S+ D+EY+ +L + +A+ I+++CI+ELHTRF ISQKNF+IK+V  +G+++
Sbjct:    1 MDTVFGVQYEGGVILAADQSNARSILLYQTNLDKVKELTSHSAMGVSGPNCDMVNFCEFVAKNIKLYELSNDIKLSTHAQANFARGELATALRKGPFQVNTLLGGFDNKVGASLYYLDYMAALQKVNYGSQGYASNFCLSIMDKEYRDDLNEADAVKIVEQCIHELHTRFLISQKNFIIKVVDKDGVRL 189
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: A0A7S2XE83_9EUKA (Proteasome subunit beta n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XE83_9EUKA)

HSP 1 Score: 202 bits (514), Expect = 2.710e-56
Identity = 102/190 (53.68%), Postives = 137/190 (72.11%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGVS-SLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVL 567
            MD LLG+ G D+V+  AD   A+SI++++ + DK+  L+  IIMA+AGPQ D   F EYIQ+N+ LY+  NDL LTTK AA+F R ELA  LRK P+Q  LL+ G DK V  SL+++DYLGSM K+ +GAHGYGSYF  S+FD+ +KK+++ E+   ++QKCI EL TRF I+   F+ KIVTAEG KV+
Sbjct:   21 MDILLGLVGKDYVMTVADRAQARSIVVFKHDEDKIFELDSKIIMATAGPQGDRANFAEYIQRNIQLYKYRNDLPLTTKGAANFTRTELATFLRKSPYQVNLLMAGHDKKVGPSLYYMDYLGSMHKMDFGAHGYGSYFCLSIFDRYFKKDMSLEQGKELMQKCIKELQTRFLINCPKFICKIVTAEGTKVI 210
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BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Match: A0A7S2FKQ2_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKQ2_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.080e-56
Identity = 99/190 (52.11%), Postives = 139/190 (73.16%), Query Frame = 1 
Query:    1 MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQSDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQLLLGGMDKGV-SSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLTQEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVL 567
            MDT+LGI G  F ++ AD   A+SI+++    DK+  L+   I+  +GPQ D   F EYIQKN+ LYELNND++L+T A A+F+R +LA ALRKGP+QT +LLGG D+G  +SL+++D   ++T V +GAHGY S F  S+FD+EYK+ ++ EEA ++I KCI ELHTRF ISQ NF+IKIV  +G++V+
Sbjct:   25 MDTVLGIKGDGFTMIVADRTSARSIMVFNQAEDKITELDSHKIIGQSGPQCDTANFAEYIQKNMTLYELNNDMKLSTFATANFMRRQLATALRKGPYQTNILLGGYDEGAGASLYFLDLYSALTPVNFGAHGYASNFCLSIFDREYKEGMSVEEAKAVIDKCIAELHTRFLISQPNFLIKIVDKDGVRVM 214
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1110.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF06_ECTSI2.080e-8266.35Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CPT6_9STRA1.620e-6757.14Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
A0A6V1PTT6_HETAK5.940e-6055.32Proteasome subunit beta n=1 Tax=Heterosigma akashi... [more]
A0A6U4C0Y9_9STRA3.380e-5952.11Proteasome subunit beta n=2 Tax=Phaeomonas parva T... [more]
W7TFQ9_9STRA2.140e-5753.68Proteasome subunit beta n=1 Tax=Nannochloropsis ga... [more]
A0A7S2XJE8_9STRA5.070e-5754.74Proteasome subunit beta n=1 Tax=Attheya septentrio... [more]
A0A7S3NPS0_9STRA5.770e-5754.21Proteasome subunit beta n=1 Tax=Aureoumbra lagunen... [more]
B7FVS5_PHATC1.790e-5652.38Proteasome subunit beta n=2 Tax=Phaeodactylum tric... [more]
A0A7S2XE83_9EUKA2.710e-5653.68Proteasome subunit beta n=1 Tax=Lotharella oceanic... [more]
A0A7S2FKQ2_9STRA3.080e-5652.11Proteasome subunit beta n=1 Tax=Florenciella parvu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1110contigC-tenellus_contig1110:5099..10368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LF06
Preferred namePSMB2
PFAMsProteasome
Model size2571
Max annot lvl2759|Eukaryota
KEGG koko:K02734,ko:K08471,ko:K12847,ko:K18626
KEGG Pathwayko03040,ko03050,map03040,map03050
KEGG ModuleM00337,M00340,M00354
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000502,GO:0003674,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0014070,GO:0016020,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0030234,GO:0031090,GO:0031323,GO:0031325,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0080090,GO:0090068,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Exons5
Evalue3.92e-91
EggNOG OGsCOG0638@1|root,KOG0177@2759|Eukaryota
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-21_006230.1
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
Cds size636
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04030,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1110.5.1prot_C-tenellus_contig1110.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1110 7034..10368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789163.3126628-UTR-C-tenellus_contig1110:5098..70331680789163.3126628-UTR-C-tenellus_contig1110:5098..7033Choristocarpus tenellus KU2346UTRC-tenellus_contig1110 5099..7033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789163.3265498-CDS-C-tenellus_contig1110:7033..71321680789163.3265498-CDS-C-tenellus_contig1110:7033..7132Choristocarpus tenellus KU2346CDSC-tenellus_contig1110 7034..7132 -
1680789163.3429146-CDS-C-tenellus_contig1110:8155..83201680789163.3429146-CDS-C-tenellus_contig1110:8155..8320Choristocarpus tenellus KU2346CDSC-tenellus_contig1110 8156..8320 -
1680789163.3560693-CDS-C-tenellus_contig1110:9248..93591680789163.3560693-CDS-C-tenellus_contig1110:9248..9359Choristocarpus tenellus KU2346CDSC-tenellus_contig1110 9249..9359 -
1680789163.365511-CDS-C-tenellus_contig1110:9862..100911680789163.365511-CDS-C-tenellus_contig1110:9862..10091Choristocarpus tenellus KU2346CDSC-tenellus_contig1110 9863..10091 -
1680789163.3771522-CDS-C-tenellus_contig1110:10336..103681680789163.3771522-CDS-C-tenellus_contig1110:10336..10368Choristocarpus tenellus KU2346CDSC-tenellus_contig1110 10337..10368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1110.5.1

>prot_C-tenellus_contig1110.5.1 ID=prot_C-tenellus_contig1110.5.1|Name=mRNA_C-tenellus_contig1110.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=212bp
MDTLLGICGPDFVIVAADAQVAKSILLYQTNLDKVKPLNDSIIMASAGPQ
SDCCTFTEYIQKNLALYELNNDLQLTTKAAAHFVRGELARALRKGPFQTQ
LLLGGMDKGVSSLFWIDYLGSMTKVPYGAHGYGSYFTYSVFDQEYKKNLT
QEEALSIIQKCIYELHTRFFISQKNFVIKIVTAEGIKVLCEPEREGVAAG
AESQSTPMVAA*
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mRNA from alignment at C-tenellus_contig1110:5099..10368-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1110.5.1 ID=mRNA_C-tenellus_contig1110.5.1|Name=mRNA_C-tenellus_contig1110.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5270bp|location=Sequence derived from alignment at C-tenellus_contig1110:5099..10368- (Choristocarpus tenellus KU2346)
ATGGACACATTGCTTGGAATCTGTGGACCCGAGTGAGTGAATTTGAATCC
TGTATCAACAACAGTCTTTCTCGAAAACATGCCCCTTAATATTGGAAGAA
TCCCTTTACAATGCTATATACAATGATCGCAACTCAACATGGTGTCATCT
CCCTCTATGCTTTTCTGTTTTGTAAGCCTTCTGCGTTCCAGTAAGATCGT
GTAGTACACAATTGATGAACCACTGAGCTCTGTATCACCGCATAATACAC
CCCTTTTATCTTCCATTTCTTGAGCAGCTTCGTCATCGTTGCGGCTGACG
CTCAGGTGGCCAAATCGATCTTACTCTATCAGACCAATTTGGATAAGGTG
AAGCCCCTAAATGATTCCATCATAATGGCGAGCGCGGGTCCCCAGTCGGA
CTGCTGTACGTTCACGGAGTATATCCAAAAGAACTTGGCTTTGTACGAGC
TCAACAACGACCTTCAGCTTACCACCAAGGCAGCAGCGCATTTTGTCCGT
GGAGAGGTGGGCTGGGGTGGTCTCAAATCATTGGTTTTGGCGACGTGGAA
AAACATTCTGTATATTTTGCATTGAAATATGTAAGCTGATTCGTACTAAC
TTGAGAGTGTACAACTTGATTGGAAGTATCCGCAACCATAAATCCCCCTT
CCTTTCTGGATGCCACGATTAAGCTTTGTTTATGGAGCTTAATTCACTCC
GGGGTCGTACGTAGATTCGGGTAGGGGTCCTTCCTTACAATACCTCACTT
AGCTGATCTTCCTGTGGATCACCCACGATTTGGGATTTTATATAAGCAAA
ACGTTGACGACAGGGAATGCATGTGCTCAGAGAACTTGAGTTTATGGCAT
GTTTCTGCTGTCGCGAAAGTTGAACAAGATCAATACCAGTTCATGCAAAG
GCAAGCAGACCCAATCACAGAGCTGATGTGTTTGAATGTGTCTTTTCTTT
GAACATATCTGCTTACTCATCCTGTAAACTGCCAATGTCCCTACTGCATT
TACTTTCAGTTGGCACGTGCCCTCCGAAAGGGCCCATTCCAGACGCAGCT
TCTCCTTGGAGGGATGGATAAGGGTGTGTCCTCACTATTCTGGATAGACT
ATCTTGGCTCAATGACCAAGGTAGGTGTGATTTATGCACGATTTGTTCCT
GATGGTGTCATGGATGAAAGAGAACACTCCTTTTGCAATGTAGCAAGGCA
TTTCTGATCTATTATTACTCATGTTCGAAATTTGTAGCAGAGTAGTGCTG
TGTAATACTTCCTAGTGGACCTGATAGTACACCCTTGTTTTGCTTGACTG
GAATTTTTCCCACATGAACTTCCACCATTTTTTGGAGTGGATGAAGTTGT
GTGTTATATTGACTGACACAAAGTGTGGGGATAGGGACTAGAAATGTGAA
GCTTGTAAAATCTCTGCTACAGGAAGATTTTCCAACTGCAGTGTTTAAGA
CTGACTGGAGGTCATAGCACAGGGGGAAGCATATGTACAGGATGGCACAA
GCACTTGTCAGATTGAACATACAGTGATTTTGTGTGTATGATAGGATCAG
GTCAGGAATGGGAAGGTTGCAGAGCCATAAAGTGGAAATGGATGGAAGGA
TCGACCTCTCCTTAGGAAATTGATATCTGCTGGGGACCCGCTTTGTTGTG
GTTGGTACATATATATGTACAGATGGAAGGAAGAGAGAAAAATGGCTCAT
TTTGTGCCCTACTTTAGTGGGCCTGAGGTTACACTTCAATGAAAAGATAA
GCCTCAATGATTCAGAGAACTACCTAAATATTTTTCTTTCAAACAAGAAG
TTGTTGGCACAGTGATGAGTCTACCTTCACAAGTGCAACTCTGAGGACCT
CCCTGTTGAAGTTCTCAGGAAGGCTAAAGTGAATTCCTTGTAATGGCACC
AACTCCCTGTTGCCCTCAAAAACATGTGATGTTAGTCAATGTCAATATTC
CCTCCTAAACCTTTAATGTTTTGCTCTCCTCCCCTCTTTTCCCGTTGTTT
CCCATGGTCTCCCTCACATATGTCTGCTGGTGTTGCTGGTGCATGTAGGT
GCCATACGGTGCTCATGGTTACGGATCGTACTTCACATATTCAGTCTTCG
ACCAGGAATACAAGAAGAATTTGACTCAGGAGGAGGCCCTGTCAATAATC
CAAAAGTGTATTTATGAGTTGCACACACGCTTCTTCATCTCTCAGAAGAA
TTTTGTGATCAAGGTACTGGATACAGACATAGCCACCCATCACAACTCCC
CCTATCAATGCCAACAATGATTCCCCTCTGAGAGATATACTGACTACTGA
CAGTACTAACTCTTTGTAATCATCTATTCTTGCCCCCCACTACTTTGATA
TTCCTGTTTATCCTATCAAGACACTGATCTCTCCAATATGCGCTCCTTGA
TTTTATTCACATTTATGTCACACTGGAGGTAGAGAGTACAGGTTAGTCTG
GGCATCTATCACCCTCTGCTTGCCTTGGTTCTTTTTTTTGCAACTTATCA
GAGGGAGTAGGGCAGCTTGTGAGTGTTGAGGGTTGAAATTGCATCATTGT
GATCACCTTGTGCTGTGTCTTTGGGAAGTCTGTGTACACAATTAGGAAGT
CTTCTTTATTAGTGCATAGTGTTGTGTGATGGTCAGTCTGCCACGTTTTT
GACTGCAGGTACTTTTGTTGTTCAATTTTTCTGTAGCACTCCACTTGACA
TCAAATCTAAAAGCAGAGGGGTTGGACAGTACACCCTTCTCTTATGTCAA
TTGAAACATGTATTATAAGTGTTGTCTTAATCATTTTATTTCGTCACGAG
TAGAAAGAATTCTCACTGGTAATTCTTCCTGAAGAGGATCACCTGCAACC
TATGTTCTACCTACCCATGAGATGTAGGGGTACTACTAAGAACTTTCCAG
TTAGACGTGTTCCCATTCATGGGGAAGGGTGGGGAGGGGAGCAGTTGCCC
TCATTGAACCATGTATGTATACTCACGAGTAATCAATCACAGTGAATGCC
ATCTTCTTTTCATTTGAAGCAGGGGTACCCTCAGATTCAAGGATTGTGAA
CTCCAGTGCACCTTTGATCATATAGTATGTGTCTGTATCCTCTGTTTAAA
CAATCCATAGTCCAATGACTAGTGCCCACTGATTTAGAAGGGAAATCTAT
TGATTGCCCTCAACTCACAGAACTATCCCAGCATTTCCTTTAGCCAATGC
TTTGGTAGTGACTGATCAATATCCACCCTGCGCCAGATCGTGACTGCTGA
GGGAATTAAAGTGCTGTGTGAACCAGAGAGGGAGGGGGTAGCAGCAGGGG
CAGAATCTCAGTCAACACCAATGGTAGCGGCATAAGAAGAGTCTCTGGTG
GTGGATGAAGGACAATGTGAAGCAGTGCGCCCTCTCAAGATTGATTTGTC
TTTTGCAGCAAATATATCATAACCCCAATGGCGGCAGAATGTGAAGTCAT
GAAAAATTGTATCTGTCCCTTTTTGGTGCTTTTGTGGGGTCTGTCCAAGG
CTATCAATAGGAGCGACAGCATGTAGTGTTTGTTCTTGTGGGGTGGCGGT
GTAGCAGTTTGAGTTGTAGTCCCCCATTGGGTCCTGCAGAGACTTATCTC
CACCAGGCAGGGAAATTTGGAGTGCAAGAAGGGTGGAGAGGGAGAATGAG
AAGATTAAGTTGAAGCAACATCCCCTTATATGGAGACTTTAGTTAGGTCC
TCAAATTGTGTGGCTAAAGGAATTTTTTCTTCACTTGTGACAAATTCAAC
TTGTAGGTTGAACTTCATTAATCAAGAAAGTTGCAGTGATGCCCACAGAG
GAGAGCTTGCATGCACTTGCTGTCGGAACAACCTTCAAAACTGATACATG
CCTAGTTGTTTTTCTGAAGGTCAAGCTGGTCAGTGCACTCCTCCCCCCTC
TTTGCATTTATGAGGGGCAAGCCAACCAACAGGCTTGATGGGGGTGGATG
GGTGTGAAAGATAACCTTGATTGATACGCTCACTACGTGAAGGATACTAC
TGAAGAGCTCAAAAATCGATATGGTAGATATGTGATTTACTTAAAATGTA
TGTTGATTGTGTGTTCACGATTTGCAATCCCTCTTGCCCCTTCCTATGTA
CTACAGGACCTTGATAAAATGGTTAAAGGCCATAGATGATGAGACCTGTT
ACGATATACATCATAAATCAAGGTATTTGGTTATAATATCTCAACTGGCA
CAACACAGTCAGCAGGTGTAGCAGGAAGAGTACCAGAATCTTCAGTTGTT
TCCATGCATAAGGACAAAAAACTTCCTTGTACATACTTAGTCCTTCTCCC
ACAAGTACAAGTGCGATTTTGAAAATAGTATCCCACGATCACCCAAGGTG
GGTACTCCCAGGTGTCAACCCTGTTTCACCTCCAGTCTGTTGGGTAATGT
GTAATGTATTTAATCCAGTGTATCACTTTTCTAAGACCAAGGCATATAGC
ACAATGTATCCCTTACATTGCAAAAATCAAACAAATGACGCTACACTGTG
TCACTCAGAAGGCTTCCGCCCCCTCCATGCATGATATGCCCATAACAAGA
CACACTCACTCTATGTGCATTGCGGCAAGATCATTATCTTGTGAGCATCT
CCTTTATATACAAGTAGATTTGGCTGGGAGGGATTTTTCAAGTTCAAGGG
GAAATTTTCATTGCATTTCTTTTTATCATGAAAATATTTCATGAGTTCCT
TTTTCCAGGTGTGAAGAAAAACATTGTAACCCTAAAATTATAATAAGCAT
GGTAAAAAAAAAAGGAAATGTGCATAAAAAAATCAGGTTAGAACATGACG
CTTTAAAAATTCCACTGCCTGTCACACTCTTGAAATAGTATTGTCTAAGC
AACGCACAGAATTTTTTTTTTGAACTCCACAAGATTTTTTATTCTTGCTG
CAATGTGGGGGTACAATACAGAGCTAAAGCCAGTAAGCCGTTGAGAGTGT
TTGACCGTGCAACTCCAGCTGCATACCACTCTTTTTTAATAACAGACTTC
ACTCTTACTGTCGCAGTGCCCAACTCTACCCATATCCAAATCACACGAAG
TGAAAACTTGTCAAGATCACTCAAAGCAAATACTTGTGTTTTGTCTTCTT
CCTATCTGTTCCTGATCAACCAAAAGTTACAGAATATAATTGGGTTGGTT
CTTTTCAGGTTGAACATATTCCCAAGTACTGAGGTAACATTTCATGGAGT
TGTACGTATTGCCCAATTTGTTTGTACTTCTTGAGTTGTTCGAGGTTTAA
GACTCCTGGGAGTGCAGGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig1110:5099..10368-

>mRNA_C-tenellus_contig1110.5.1 ID=mRNA_C-tenellus_contig1110.5.1|Name=mRNA_C-tenellus_contig1110.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=636bp|location=Sequence derived from alignment at C-tenellus_contig1110:5099..10368- (Choristocarpus tenellus KU2346)
ATGGACACATTGCTTGGAATCTGTGGACCCGACTTCGTCATCGTTGCGGC
TGACGCTCAGGTGGCCAAATCGATCTTACTCTATCAGACCAATTTGGATA
AGGTGAAGCCCCTAAATGATTCCATCATAATGGCGAGCGCGGGTCCCCAG
TCGGACTGCTGTACGTTCACGGAGTATATCCAAAAGAACTTGGCTTTGTA
CGAGCTCAACAACGACCTTCAGCTTACCACCAAGGCAGCAGCGCATTTTG
TCCGTGGAGAGTTGGCACGTGCCCTCCGAAAGGGCCCATTCCAGACGCAG
CTTCTCCTTGGAGGGATGGATAAGGGTGTGTCCTCACTATTCTGGATAGA
CTATCTTGGCTCAATGACCAAGGTGCCATACGGTGCTCATGGTTACGGAT
CGTACTTCACATATTCAGTCTTCGACCAGGAATACAAGAAGAATTTGACT
CAGGAGGAGGCCCTGTCAATAATCCAAAAGTGTATTTATGAGTTGCACAC
ACGCTTCTTCATCTCTCAGAAGAATTTTGTGATCAAGATCGTGACTGCTG
AGGGAATTAAAGTGCTGTGTGAACCAGAGAGGGAGGGGGTAGCAGCAGGG
GCAGAATCTCAGTCAACACCAATGGTAGCGGCATAA
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