mRNA_C-tenellus_contig1109.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1109.1.2
Unique NamemRNA_C-tenellus_contig1109.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1109.1.2 vs. uniprot
Match: A0A6H5KB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.850e-10
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 3 
Query:    6 DRRKKGWGGWLSTLVSGGGSRGWKEGQGGNLEDTGLCGREGDRVPLMRTVRFLGAQLKNLGSPPPPAIGLVAFENILETVRGVPFPMPRAFFHSKGAARLWMTALSP 326
            + +KK W GWL  LV+ G             E+    G       L++ VR LG++L  L  PP  +IG VAF +ILE+VRG PFP+PRAFF +  + R+ ++AL P
Sbjct:  943 NNKKKTWRGWLERLVAAGAQE----------EEEDRVGGGETEGALLKAVRLLGSRLLGLSDPPKASIGRVAFSSILESVRGTPFPIPRAFFRTGVSPRVALSALPP 1039
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BLAST of mRNA_C-tenellus_contig1109.1.2 vs. uniprot
Match: D8LGT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.710e-10
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 3 
Query:    6 DRRKKGWGGWLSTLVSGGGSRGWKEGQGGNLEDTGLCGREGDRVPLMRTVRFLGAQLKNLGSPPPPAIGLVAFENILETVRGVPFPMPRAFFHSKGAARLWMTALSP 326
              +KK W GWL  LV+ G             E+    G       L++ VR LG++L  L  PP  +IG VAF +ILE+VRG PFP+PRAFF +  + R+ ++AL P
Sbjct:  867 SNKKKTWRGWLERLVAAGAEE----------EEEDRVGGGETEGALLKAVRLLGSRLLGLSDPPKASIGRVAFSSILESVRGTPFPIPRAFFRTGVSPRVALSALPP 963
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1109.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KB40_9PHAE2.850e-1040.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGT4_ECTSI3.710e-1040.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1109contigC-tenellus_contig1109:2..3492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1608
Hectar predicted targeting categoryother localisation
Exons4
Cds size996
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1109.1.2prot_C-tenellus_contig1109.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1109 145..3023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.6053305-UTR-C-tenellus_contig1109:1..1441680789162.6053305-UTR-C-tenellus_contig1109:1..144Choristocarpus tenellus KU2346UTRC-tenellus_contig1109 2..144 +
1680789162.6593106-UTR-C-tenellus_contig1109:3023..34921680789162.6593106-UTR-C-tenellus_contig1109:3023..3492Choristocarpus tenellus KU2346UTRC-tenellus_contig1109 3024..3492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.615301-CDS-C-tenellus_contig1109:144..2121680789162.615301-CDS-C-tenellus_contig1109:144..212Choristocarpus tenellus KU2346CDSC-tenellus_contig1109 145..212 +
1680789162.6292565-CDS-C-tenellus_contig1109:1047..15581680789162.6292565-CDS-C-tenellus_contig1109:1047..1558Choristocarpus tenellus KU2346CDSC-tenellus_contig1109 1048..1558 +
1680789162.6378753-CDS-C-tenellus_contig1109:1798..19331680789162.6378753-CDS-C-tenellus_contig1109:1798..1933Choristocarpus tenellus KU2346CDSC-tenellus_contig1109 1799..1933 +
1680789162.6484303-CDS-C-tenellus_contig1109:2741..30231680789162.6484303-CDS-C-tenellus_contig1109:2741..3023Choristocarpus tenellus KU2346CDSC-tenellus_contig1109 2742..3023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1109.1.2

>prot_C-tenellus_contig1109.1.2 ID=prot_C-tenellus_contig1109.1.2|Name=mRNA_C-tenellus_contig1109.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=332bp
MRTVRFLGAQLKNLGSPPPPAIGLVAFENILETVRGVPFPMPRAFFHSKG
AARLWMTALSPPSKKAWAAADAAVAATAAPTDEDPVSNLASTGYQVGVAP
KTAGVKTSESNGCTAKREARSTLLQSLILRGTNGREEGWNAINRARANAA
REVVREEADLSRGLPRPKGDFWLLQGCVSWNGRQGGGLPPVCEVILKVHF
RLHSGGHCEPPAPGALSNTEKGGKSGTSQKVPPPTPIQLSADVFSAESDM
PRVICFRKELQVPCERLANDEVQAVVVDVLVRIQRANRDRCRGNEETVQW
GPSTLVAHGNTTTKGETWWLGRTTVALSPVT*
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mRNA from alignment at C-tenellus_contig1109:2..3492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1109.1.2 ID=mRNA_C-tenellus_contig1109.1.2|Name=mRNA_C-tenellus_contig1109.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3491bp|location=Sequence derived from alignment at C-tenellus_contig1109:2..3492+ (Choristocarpus tenellus KU2346)
GCCTTGATCGTCGGAAGAAGGGGTGGGGGGGCTGGTTGTCGACATTGGTG
AGTGGAGGAGGGAGCAGAGGTTGGAAGGAGGGACAGGGGGGTAACTTGGA
GGACACTGGACTTTGTGGGAGAGAGGGTGATCGAGTGCCGTTAATGAGAA
CAGTGCGCTTTCTTGGGGCTCAACTGAAGAACCTGGGGTCGCCACCTCCA
CCGGCCATAGGGTGAGATCTGTCTGTGTAGCAGTGCTTTGGCCGTGGGTT
ATTGTACAGAGGTCAGTGATGGTGAATCTGAGGGGCCAACCTTGTTGCAA
TTGACATGGCAGGAAATTTTGTTGGGTAAATTGGATGGTGACAAGTCCCT
TCAGCTGTGACCATATTACTTTGTTTCAAACGAAGTACTCTGCTGGTCAT
ATTTCTGGGGGCACTAGTTCCAAGGTTGATGAGGACGAGGAACTGGTTGG
TACTGGTACTATTTACTTCACTTCAGTTAGAACTGGTTTGTAGGTTACAG
ATAGGAGAAGGACGTGCGTCTAGGCTATGAATGGGTTGCATACCTTGCAG
GATGTGTTATTTGTGTACGAAATTGAAGGACTGTGGCAAGTGAGGCTTGA
AGCTATGGTTGAGGAATGGACTGCCGTGTAGATTAAAGGGGCAAGATGAT
TGTGGTGGTGAGCTAATTGTTCTCTTTCGAACCTGTTTAGGAATGGAGAG
TGTTTCTTAACGTTGGGGTGTTGTCGCATCTACATTTTTCATTCCTGAAG
CATAGGTCCCAGGAGTGTGAAGAATGATGTACATAGCAGAGAGCGCTCTC
TCTCTCTTTGTGGATGACAATGCAACAACTTCCAGAGGTTGAATGTCTTC
AAGCTTGTTTACTGAATTCTCCGTACAAGCGAGTACCAAGTCATTCTTGG
CAGTTACACATATACTGATACATACTTTTGTCACATTGACACGAAGCGCA
GACACAAACCCTCGCATCTAGTTGCTCAATCAAGCCTTCTCACTTTGTCT
GCCTGCCTTTCTTGATCGCCAATTAATGCCTGTTGTTCCTCTCAAGGTTG
GTTGCCTTTGAGAACATTCTAGAAACTGTACGTGGCGTGCCTTTTCCCAT
GCCTAGGGCTTTCTTCCACTCCAAGGGTGCAGCCAGGTTGTGGATGACAG
CACTCTCTCCCCCCTCGAAAAAGGCATGGGCTGCCGCTGATGCTGCTGTG
GCAGCCACAGCAGCCCCCACTGATGAAGATCCAGTCAGCAACCTCGCAAG
TACCGGCTACCAAGTTGGAGTTGCTCCGAAGACAGCAGGAGTGAAGACAA
GTGAATCGAATGGATGTACGGCTAAGAGAGAGGCTAGATCTACTTTGCTG
CAGTCATTGATACTTAGGGGCACAAATGGAAGAGAGGAAGGGTGGAATGC
GATCAATCGTGCGAGGGCAAATGCTGCAAGGGAGGTGGTCAGGGAGGAGG
CAGACCTGAGCAGAGGGCTACCTAGACCGAAAGGCGACTTTTGGCTCCTT
CAGGGCTGTGTATCATGGAATGGGAGACAGGGGGGAGGGCTGCCTCCAGT
CTGTGAGGTGCTAGTTGTGTCTGGTTTTGTGAACGCTTGTGTGACAGTTT
TGCACTGAATGTAAAGATACAACGACATGCTCCAGGACCACTCCGACTCC
CTATTAGTTACTGAACCCGCTAAGCCACCCCTCATGTTCTTGTGCCCCCT
GCATGTTTTGACACAAACTCTCCTACTCATCTTCACCACTTTTGGGGACA
CCTTGACCTGGTGGGCATCCTTTTTGTTGGACCTTTTTGGAATGCAGGTC
ATCCTTAAGGTTCATTTCCGTCTGCATTCAGGTGGACACTGTGAACCTCC
AGCTCCTGGTGCACTAAGCAACACTGAGAAGGGTGGCAAGTCGGGCACCT
CCCAGAAGGTGCCCCCTCCCACACCAATCCAGGTGAGGGATGTACTTTGA
GTGTGTTTGGGTGTTTTTCCAGGGTCATGGGCTGATAACATTGCAGACCC
TTCTGTGCTCAAAGGGCGTGCAACTCTAATTATTGCCTTGGGCAGTAGCC
TGATAACCTGAACTTCCAGTAAGCCACTGCCTGGGAAGAATTGAGTCATG
TATTGGCAATATCTGCAGCATCCCCTCCGGCACTGTCTCTTTCTTCTGTT
ATCTTTATTTTTCTCATGTGGGGGGCCCCAAAAGGACCAAGCGTTCTGTT
GCTGTTGTTTTAAAAAGAACTTCTGCATGTGAAACTGGTGAAGTTGGTGT
TCTTTGTTAGTCCTCACCAGAGTCTGGACTGAAGTTGAGTAAGTTTGAGA
GGGGGTGTCATGAGCTCAGATGTGAGCTTAGCAACCTCAAAAAGGGTGAG
GAGCGTGCCATTTGTCCTCCATTAAAAGGGCAAACACTCCATGTGGTCAA
CAAGTAGATACTAGAGGATGCCAAACCAAGGAATCAAATGACATTTTTCA
ACCTTGTCTTTTTTTTGCTGTCTAATTTTCGTTATCATTGGTTCACTGCC
CCCACCCCCACATTGCTGTGCCAGTCCCAGACAACACTATCCCCCCTTCT
CTGCCCACCAATCCATTTTCTGTGCTGACAACATGTGAAACTGCCACTTG
ACCATGATGTTGTGGTGGTGTGGAAATGGATACCATTTACAATTGGACTG
GGACAATGTATGTCACTGCGTACTTCGCTCCAATGGCCAAACAACATCAA
CTATGACTGCTGCTGAAATGTTGCTGGTACACGCTACAAGCTATCGGCCG
ATGTATTTAGTGCTGAGAGTGACATGCCTCGAGTTATCTGCTTCCGCAAG
GAACTCCAGGTGCCCTGTGAAAGGCTTGCCAATGACGAAGTTCAAGCTGT
TGTTGTGGATGTCTTGGTTCGTATCCAAAGAGCCAATAGGGACAGGTGTA
GGGGGAATGAAGAGACGGTTCAGTGGGGACCATCGACCTTGGTTGCTCAT
GGAAATACCACAACAAAGGGAGAGACCTGGTGGCTAGGAAGGACAACAGT
GGCGTTGTCACCTGTGACATGAAATTGTGCACACTTTTCTTGAACTGTTC
TTTCTTGTATGGAGTACAGTGTAGAAGTGAAGCTTTGATGTCGTGTAGAA
TGGCATCTTTCTCTCCAAGGTTGAGGAGCCCACATGTCATCAAATACGAT
TTCACTACGTTGAGCTTCTACCTCTGGATCAGGAAGCAAGATTCCTCATA
ATTGTGCAAAATTAGATAGAGGGTTAAGCGAAATCAATCCCATGTGTGCG
ACTGTAGATACATCTCCACACCATCAATATCATGCTTCGACAGCACCATC
AGTACCATAACTAGCAATGTCTCTGCTACAAATCGTCAAAGCTACCCACT
CAGGTTGTGGGCTCTACTGCACCAGCCACGTTTCTGTTCATTTTCGGGCA
CACACCCAAACTTCGCATTTTGCGGAACATTCTTGGGGTATGTCGAAAGT
TAAGGTAAATGTTATGCCGAATGAGGGTAACAAAAATCCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1109:2..3492+

>mRNA_C-tenellus_contig1109.1.2 ID=mRNA_C-tenellus_contig1109.1.2|Name=mRNA_C-tenellus_contig1109.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=996bp|location=Sequence derived from alignment at C-tenellus_contig1109:2..3492+ (Choristocarpus tenellus KU2346)
ATGAGAACAGTGCGCTTTCTTGGGGCTCAACTGAAGAACCTGGGGTCGCC
ACCTCCACCGGCCATAGGGTTGGTTGCCTTTGAGAACATTCTAGAAACTG
TACGTGGCGTGCCTTTTCCCATGCCTAGGGCTTTCTTCCACTCCAAGGGT
GCAGCCAGGTTGTGGATGACAGCACTCTCTCCCCCCTCGAAAAAGGCATG
GGCTGCCGCTGATGCTGCTGTGGCAGCCACAGCAGCCCCCACTGATGAAG
ATCCAGTCAGCAACCTCGCAAGTACCGGCTACCAAGTTGGAGTTGCTCCG
AAGACAGCAGGAGTGAAGACAAGTGAATCGAATGGATGTACGGCTAAGAG
AGAGGCTAGATCTACTTTGCTGCAGTCATTGATACTTAGGGGCACAAATG
GAAGAGAGGAAGGGTGGAATGCGATCAATCGTGCGAGGGCAAATGCTGCA
AGGGAGGTGGTCAGGGAGGAGGCAGACCTGAGCAGAGGGCTACCTAGACC
GAAAGGCGACTTTTGGCTCCTTCAGGGCTGTGTATCATGGAATGGGAGAC
AGGGGGGAGGGCTGCCTCCAGTCTGTGAGGTCATCCTTAAGGTTCATTTC
CGTCTGCATTCAGGTGGACACTGTGAACCTCCAGCTCCTGGTGCACTAAG
CAACACTGAGAAGGGTGGCAAGTCGGGCACCTCCCAGAAGGTGCCCCCTC
CCACACCAATCCAGCTATCGGCCGATGTATTTAGTGCTGAGAGTGACATG
CCTCGAGTTATCTGCTTCCGCAAGGAACTCCAGGTGCCCTGTGAAAGGCT
TGCCAATGACGAAGTTCAAGCTGTTGTTGTGGATGTCTTGGTTCGTATCC
AAAGAGCCAATAGGGACAGGTGTAGGGGGAATGAAGAGACGGTTCAGTGG
GGACCATCGACCTTGGTTGCTCATGGAAATACCACAACAAAGGGAGAGAC
CTGGTGGCTAGGAAGGACAACAGTGGCGTTGTCACCTGTGACATGA
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