mRNA_C-tenellus_contig11087.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11087.1.1
Unique NamemRNA_C-tenellus_contig11087.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11087.1.1 vs. uniprot
Match: D7FKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG8_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.190e-49
Identity = 93/192 (48.44%), Postives = 120/192 (62.50%), Query Frame = 1 
Query:    4 SGEWCQLWLSQHLPVGAYIDVDE--ARHDYDILQSHPKHPGVVVHTWEDFPIDVELPASTSGQHVVGFQFWSPLLCTDKGGGELKTAENGTGQGGTGSGCRNEVLAQLTLPLHLRYPDPGCPKGSRECKRHVFVEVPPPLISIRCGSE-NVSR--PVVLVSPPETVLLEVPRGLIWHRDIVVWGTLLSSIVG 564
            + EWC++ L+QH+P GAYIDVDE  ARHD+D+L S P    V V T+E  PIDVELP+S SGQH+V F  W  +   D+G                  G    + A LTLP+HLRYPDPGC +   EC+ + +VEVPPPL SIRCGS  N+ +  PV+   PP  V L VPRG+ WHRD+V+ GT  ++ +G
Sbjct:  396 ASEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPVGRRVGVETFEGGPIDVELPSSVSGQHLVNFNLWVDMSERDRG----------------REGEARSIQADLTLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSAGNMGQFFPVLPARPPVGVALRVPRGIAWHRDLVMMGTTGAAALG 571
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BLAST of mRNA_C-tenellus_contig11087.1.1 vs. uniprot
Match: A0A6H5L0R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R2_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.420e-26
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 1 
Query:   10 EWCQLWLSQHLPVGAYIDVDE--ARHDYDILQSHPKHPGVVVHTWEDFPIDVELPASTSGQHVVGFQFWSPLLCTDKGGGELKTAENGTGQGGTGSGCRNEVLAQLTLPLHLRYPDPGCPKGSRECKRHVFVE 402
            E C++ L+QH+P GAYIDVDE  ARHD+D+L S P    V V T++  PIDVELP+S SGQH+V F  W  +   D+G   L+             G  + + A LTLP+HLRYPDPGC +   EC+ + +V+
Sbjct:  456 ELCEVLLAQHVPRGAYIDVDEVKARHDFDVLSSPPIGRRVGVETFQGGPIDVELPSSVSGQHLVNFNLWVDMSERDRG---LE-------------GEASSIQADLTLPVHLRYPDPGCDRRGEECEGYAWVK 572
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKG8_ECTSI1.190e-4948.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0R2_9PHAE1.420e-2645.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11087contigC-tenellus_contig11087:3248..5112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size597
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_002130.1
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.3740735-CDS-C-tenellus_contig11087:3247..34421680789162.3740735-CDS-C-tenellus_contig11087:3247..3442Choristocarpus tenellus KU2346CDSC-tenellus_contig11087 3248..3442 -
1680789162.3834462-CDS-C-tenellus_contig11087:4144..44741680789162.3834462-CDS-C-tenellus_contig11087:4144..4474Choristocarpus tenellus KU2346CDSC-tenellus_contig11087 4145..4474 -
1680789162.3942933-CDS-C-tenellus_contig11087:5040..51121680789162.3942933-CDS-C-tenellus_contig11087:5040..5112Choristocarpus tenellus KU2346CDSC-tenellus_contig11087 5041..5112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11087.1.1prot_C-tenellus_contig11087.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11087 3248..5112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11087.1.1

>prot_C-tenellus_contig11087.1.1 ID=prot_C-tenellus_contig11087.1.1|Name=mRNA_C-tenellus_contig11087.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=199bp
MSGEWCQLWLSQHLPVGAYIDVDEARHDYDILQSHPKHPGVVVHTWEDFP
IDVELPASTSGQHVVGFQFWSPLLCTDKGGGELKTAENGTGQGGTGSGCR
NEVLAQLTLPLHLRYPDPGCPKGSRECKRHVFVEVPPPLISIRCGSENVS
RPVVLVSPPETVLLEVPRGLIWHRDIVVWGTLLSSIVGTIMLLRVILRV
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mRNA from alignment at C-tenellus_contig11087:3248..5112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11087.1.1 ID=mRNA_C-tenellus_contig11087.1.1|Name=mRNA_C-tenellus_contig11087.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1865bp|location=Sequence derived from alignment at C-tenellus_contig11087:3248..5112- (Choristocarpus tenellus KU2346)
ATGTCTGGCGAGTGGTGTCAGCTTTGGCTGTCGCAACACCTCCCTGTGGG
GGCATACATTGATGTGGATGAGGTCAAGGCAAGTAAACATCATGGTGGGG
CAGGGGAAGTGACCAAGGAGAGGGAACCTGGGAGGTTGATCTTGCTCACG
GTGTCCATAAGATTGGGAGCTCAATACGACTTTTGACCATCACATGCTGT
GATATATATTTTTAGTACATTTTCCTGCAGGTTCTGTAGAACTGTGTAGC
CTTATTAATGGATGTTTTGTTGGATTTTTTTTTTCACTTGGATTAGGATT
GTTGTCGCTCTTTGATGCAGGAACAGCAAACCCATTTTTTTGCCTAAGTG
AAAGATCAAGGAGGACACAGGCAAGACTTGCCACTTTCCTAGCTCATGCC
CAGTGCAGGACACAATTAAGCCATGGTATTTGTGGCTTGGTTATAATACC
TAACACTCTGGCGACACTAGAATAGATTAAAGTCAAGTTGTTTTCAGGTT
TGTCTGCTTGCTCACAAGAGGTGTAGCCTCATCACCAATAACCCTGATGC
AAGACATCGTTGGTCTTGACTACCAACCACCTGATGTATATCCCCCTTTC
CCCCCCCCCTGCCCCCCCCTGGACGAATACAATCTCAGGCAAGGCATGAC
TATGACATCCTCCAATCACACCCCAAACACCCAGGAGTCGTAGTTCACAC
ATGGGAAGACTTTCCCATAGATGTGGAGCTCCCGGCATCGACTTCGGGAC
AGCATGTTGTGGGGTTCCAGTTCTGGTCCCCACTGCTGTGTACCGATAAA
GGAGGAGGAGAACTAAAGACTGCAGAAAATGGGACTGGTCAAGGGGGGAC
TGGAAGTGGATGCCGAAATGAGGTACTAGCGCAACTGACATTGCCACTCC
ACCTGAGGTACCCGGACCCAGGTTGCCCAAAGGGGTCTCGGGAATGCAAA
CGACATGTGTTTGTTGAGGTGGGTTTTGTTGCTTTGCACCGGGAAGACCC
TTGCTGAGAATTTGATATTCTATGTTGCTAGGCGCTGTGGTTTGTGACCA
TGAAGCCCTCTTCCCTTGTGTTTGTAAGGATATTTTCGTAGCAACAGCTG
TCCTAGAAGGTGGATACTCATGAGCAATCCCAGTATTGATCTTAGGGACG
CAGCAGCATGAAGGGAACATTATAGCCAATGAATAAGTGCATATGGTTTG
AAGTGAGCTGATGAGATGGATGCTCCATCTCCTTGCACCTCTTCTGACCC
TTTTGCTCTTGGAACTATGAGGTTTTAAGTTGTAGTCTTTCCCATCTCTC
CCTTTTTTCATCCCCTTGTAGCCACCTCAACCACTATGACAACTGTGTGC
ATCCATTTGTTCCCCCCACTGAAGAAGAATGGAGGGTTGAGTCCTTCTTA
AGGACTATTAATGGTCTGGTTCTGTTTAGTTTTTGGAAAATGTCGGGAAA
TTGCCACATATGGCTTCCAAACGGATGTTGGCCTGCAAGAACACATTAAA
TGGAGTATGTGCTGGCAGTTCTTTTCTCTAAGTAGTTGGTCTAATTTCTT
CCCTGATATTTTTCCCCACCTCCCCTCTACCTCCTCATCCTCTCACCACC
CCCTTCCCCATGACTTTGTGCCATCACACCCATGTTTTCACTGTTGAAAT
CATTCACCACACCTACACAGGTGCCCCCTCCCCTCATCAGCATACGTTGT
GGATCCGAGAACGTTTCAAGACCTGTTGTACTGGTCTCTCCGCCTGAAAC
AGTGTTGCTGGAGGTTCCCCGTGGTCTGATTTGGCATCGAGATATCGTGG
TTTGGGGTACACTTCTATCCTCCATCGTGGGAACCATCATGTTGCTGCGG
GTGATTCTAAGGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig11087:3248..5112-

>mRNA_C-tenellus_contig11087.1.1 ID=mRNA_C-tenellus_contig11087.1.1|Name=mRNA_C-tenellus_contig11087.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=597bp|location=Sequence derived from alignment at C-tenellus_contig11087:3248..5112- (Choristocarpus tenellus KU2346)
ATGTCTGGCGAGTGGTGTCAGCTTTGGCTGTCGCAACACCTCCCTGTGGG
GGCATACATTGATGTGGATGAGGCAAGGCATGACTATGACATCCTCCAAT
CACACCCCAAACACCCAGGAGTCGTAGTTCACACATGGGAAGACTTTCCC
ATAGATGTGGAGCTCCCGGCATCGACTTCGGGACAGCATGTTGTGGGGTT
CCAGTTCTGGTCCCCACTGCTGTGTACCGATAAAGGAGGAGGAGAACTAA
AGACTGCAGAAAATGGGACTGGTCAAGGGGGGACTGGAAGTGGATGCCGA
AATGAGGTACTAGCGCAACTGACATTGCCACTCCACCTGAGGTACCCGGA
CCCAGGTTGCCCAAAGGGGTCTCGGGAATGCAAACGACATGTGTTTGTTG
AGGTGCCCCCTCCCCTCATCAGCATACGTTGTGGATCCGAGAACGTTTCA
AGACCTGTTGTACTGGTCTCTCCGCCTGAAACAGTGTTGCTGGAGGTTCC
CCGTGGTCTGATTTGGCATCGAGATATCGTGGTTTGGGGTACACTTCTAT
CCTCCATCGTGGGAACCATCATGTTGCTGCGGGTGATTCTAAGGGTG
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