mRNA_C-tenellus_contig11083.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11083.1.1
Unique NamemRNA_C-tenellus_contig11083.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: D7FV66_ECTSI (Postmeiotic segregation increased 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV66_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 8.410e-147
Identity = 232/315 (73.65%), Postives = 257/315 (81.59%), Query Frame = 1
Query:    1 MGERSIKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGED-------------VMLDQESGS----------DGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPK 876
            M + SIKAIDK SVARICSGQVITDLATAVKELVENS+DAGAKHVEVKLK+FG+D+IEVSDNG GVSP N+EGL LKYHTSKL++FSDL  V SFGFRGEALSSLCEL   F VTTRTAD++VGVKLAYGR+GK+L K TAPRQVGTTVSI+ +FEPLPVRRGEF+RNIKKQFNKLLR MQAYALISLG+RITVTN K+KGGKQT IGTQYNNKL DNVTNVFGAKFL TL  V +C+ ++  ++                 Q+ GS          DG R IWGMVSKAG GVGR+DNDRQFLYLNGRPVDLPK
Sbjct:    1 MEQPSIKAIDKVSVARICSGQVITDLATAVKELVENSLDAGAKHVEVKLKEFGVDLIEVSDNGSGVSPSNYEGLALKYHTSKLATFSDLTGVRSFGFRGEALSSLCELAGSFSVTTRTADESVGVKLAYGRNGKMLGKETAPRQVGTTVSISNMFEPLPVRRGEFRRNIKKQFNKLLRGMQAYALISLGVRITVTNTKAKGGKQTHIGTQYNNKLDDNVTNVFGAKFLKTLSPVSICLPEEGTQNEEXXXXXXXXXXXXXQGQQGGSVTGSGAQKAKDGERKIWGMVSKAGVGVGRADNDRQFLYLNGRPVDLPK 315          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A835YM26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM26_9STRA)

HSP 1 Score: 346 bits (887), Expect = 2.160e-110
Identity = 186/289 (64.36%), Postives = 207/289 (71.63%), Query Frame = 1
Query:   13 SIKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPKV 879
            SIKAIDK SVARICSGQVITDL TAVKELVENSIDAGA HVEVKL++FGLD+IEVSDNG GV P N+EGL LKYHTSKL+ F+DL  + SFGFRGEALSSLCEL   F VTTRTADQ VGVKL Y R GKL++K T PR  GTTVSI KLF PLPVR+GEFKRNIKKQ+N+LLR +Q YALI +G+R+TVTN         LI TQ N +L DNV N                                    R I G+VSKAGEGVGRSD +RQF +LNGRPV+LPKV
Sbjct:    3 SIKAIDKESVARICSGQVITDLGTAVKELVENSIDAGATHVEVKLREFGLDLIEVSDNGSGVPPHNYEGLALKYHTSKLTEFNDLKSIASFGFRGEALSSLCELAGSFVVTTRTADQAVGVKLTYNRAGKLVSKDTVPRPPGTTVSIGKLFSPLPVRQGEFKRNIKKQYNRLLRVLQGYALICVGVRLTVTNTMPGKQPSRLIATQRNARLEDNVAN------------------------------------RRITGLVSKAGEGVGRSDTERQFTFLNGRPVELPKV 255          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A1Y1HU70_KLENI (DNA mismatch repair protein-MLH1 family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HU70_KLENI)

HSP 1 Score: 306 bits (783), Expect = 1.460e-92
Identity = 156/289 (53.98%), Postives = 206/289 (71.28%), Query Frame = 1
Query:   13 SIKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPKV 879
            +IK IDK +V RICSGQV+ DLATAVKELVENS+DAGA++++++LK++G ++IEV+DNGCGV+P NH GL LKYHTSK+S+FSDL  + +FGFRGEALSSLC L AD  +TTRTA + V  +L + R+G++ +     R VGTTV++ KLF PLPVR  EF RN+K+++ KLL  +QAYALIS  +R+  TN     G+ T+I TQ    + DN+  VFG KF S+L  +EV I  DS +               + G VSKAG G GR+  DRQFL++NGRPV++PKV
Sbjct:   10 AIKPIDKAAVHRICSGQVVLDLATAVKELVENSLDAGARNIDIRLKEYGSELIEVADNGCGVAPENHAGLALKYHTSKISTFSDLTSLATFGFRGEALSSLCAL-ADVTITTRTAAEPVATELVFDRNGRVASSRKVARAVGTTVAVGKLFSPLPVRHREFTRNVKREYGKLLTLLQAYALISTDVRLICTNQAGSAGRSTVIQTQGGRSVRDNIVTVFGTKFASSLEPIEVAIG-DSHK---------------VTGFVSKAGAGCGRASGDRQFLFVNGRPVEMPKV 281          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A1S3H5N3_LINUN (mismatch repair endonuclease PMS2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H5N3_LINUN)

HSP 1 Score: 290 bits (741), Expect = 1.190e-90
Identity = 149/288 (51.74%), Postives = 202/288 (70.14%), Query Frame = 1
Query:   16 IKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPKV 879
            I+AIDK SV RICSGQV+ +LATAVKELVENSIDAGA  +EV+L+++G D++EV DNG GV   N EGL LK+HTSKL  F+DL  V +FGFRGEALSSLC L +   +TT   D  VG KL Y  +GKL+N++   RQ GTTV +++LF  LPVR  EF+RN+KK+F+K+++ + +Y +++ G+RI+ TNV  KG K T+I T  N  + +N+TNVFGAK L+TL+    C  +D   +    + +  +G+  I G +SK   G+GRS  DRQF ++N RP DL K+
Sbjct:    5 IQAIDKKSVHRICSGQVVLNLATAVKELVENSIDAGASIIEVRLREYGSDLVEVVDNGLGVEESNFEGLTLKHHTSKLQDFADLVSVETFGFRGEALSSLCAL-SKLTITTCHVDGKVGTKLEYDHNGKLINQTPCARQQGTTVCLSQLFSTLPVRYKEFQRNLKKEFSKMVQVLNSYCIVATGVRISCTNVTEKGKKSTVISTNGNPGMRENITNVFGAKQLNTLMDFTQCQPEDDTAEEYGLKSTNKNGLLKITGFISKCDHGLGRSSTDRQFFFINKRPCDLTKL 291          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A388M176_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M176_CHABU)

HSP 1 Score: 299 bits (766), Expect = 3.210e-89
Identity = 152/288 (52.78%), Postives = 204/288 (70.83%), Query Frame = 1
Query:   16 IKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPKV 879
            I+ ID+ ++ RICSGQV+ DLATA KELVENS+DAGA ++E++LK++G DM+EV+DNGCGV+P N++GL LKYHTSK+S FSDL R+TSFGFRGEALSSLC L AD  V TRTAD   G KL +   G L+++S   R VGTTVS++++F  LPVR  EF RNI+++++KLL  +QAYA+IS G+RI  +N   K GK T++ TQ    L +N+ +VFG K ++ +  +EV ++ D                  + G +SK G G GR+  DRQF Y+NGRPVDLP+V
Sbjct:   23 IRPIDRAAIHRICSGQVVLDLATAAKELVENSLDAGATNLELRLKEYGADMVEVADNGCGVAPENYQGLTLKYHTSKISDFSDLERLTSFGFRGEALSSLCAL-ADVTVVTRTADLAAGAKLEFDHSGLLVSQSPVARSVGTTVSVSRIFSTLPVRHKEFTRNIRREYSKLLALLQAYAIISKGVRIFCSNQTGKSGKTTVMKTQGGESLRENLVSVFGTKMVNVMDPIEVRLSDDCH----------------VEGFISKPGVGSGRASADRQFFYINGRPVDLPRV 293          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A2K1K8F7_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K8F7_PHYPA)

HSP 1 Score: 291 bits (746), Expect = 1.830e-88
Identity = 151/292 (51.71%), Postives = 204/292 (69.86%), Query Frame = 1
Query:    4 GERSIKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPKV 879
            G   I+ ID+ +V RICSGQV+ DLATAVKELVENS+DAGA  +E++LK++G  +IEV+DNG GVSP N++GL LKYHTSK+S FSDL  +TSFGFRGEALSSLC L +D  VTTR  ++ +G +L Y   G L ++ +  R VGTTV++A LF PLPVR  EFKRNI++++ +LL  +QAYALI+ G+RI  TN   K G+ T++ TQ +  + DN+ +VFG+K  + L  + + +               SDG   + G +S+ G G GR+  DRQF+Y+NGRPVDLPK+
Sbjct:    7 GGAKIQPIDRAAVHRICSGQVVLDLATAVKELVENSLDAGATSIEIRLKEYGSVLIEVADNGSGVSPENYQGLTLKYHTSKISDFSDLQTLTSFGFRGEALSSLCAL-SDVSVTTRAKEEAIGARLTYDHSGVLSSQESVARAVGTTVAVANLFSPLPVRFKEFKRNIRREYGRLLSVLQAYALIAKGVRIFCTNQVGKSGRTTIVRTQGSGSVKDNIISVFGSKTAACLEPLNMEV---------------SDGCL-VEGFISRPGSGCGRASGDRQFIYVNGRPVDLPKI 281          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: UPI000D1C7953 (DNA mismatch repair protein PMS1 isoform X2 n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7953)

HSP 1 Score: 291 bits (746), Expect = 2.010e-88
Identity = 153/287 (53.31%), Postives = 200/287 (69.69%), Query Frame = 1
Query:   16 IKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPK 876
            I  IDK S+ RICSGQVI DLATAVKELVENS+DAGA  +EVKLK+ G D IEVSDNG GVS  N++GL LKYHTSKLS FSDL  +TSFGFRGEALSSLC L AD  + TRT +   G +++Y R G +++K TA RQVGTTV+++KLF PLPVR  EF RN+++++++++  +QAYALIS  +R+  TN+  K  + T++ TQ    + +N+  +FG K ++ L  V++ + +D                 SI G VSK G G GR  +DRQF ++NGRPVDLPK
Sbjct:   35 IHPIDKASIHRICSGQVILDLATAVKELVENSLDAGATSIEVKLKEHGGDAIEVSDNGSGVSSDNYQGLTLKYHTSKLSDFSDLQSLTSFGFRGEALSSLCSL-ADVSIHTRTKEDETGTRISYNRAGLIVSKETAARQVGTTVTVSKLFSPLPVRHKEFLRNVRREYSRMIAILQAYALISKNVRLVCTNLVGKSSRSTILRTQ-GGSVRENIVTIFGPKTMACLDPVDISLPEDL----------------SIEGFVSKPGSGSGRGSSDRQFFFVNGRPVDLPK 303          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A0W8DAC7_PHYNI (DNA_mis_repair domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DAC7_PHYNI)

HSP 1 Score: 280 bits (717), Expect = 3.500e-88
Identity = 152/310 (49.03%), Postives = 201/310 (64.84%), Query Frame = 1
Query:   13 SIKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGG-KQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQ-----ESGSDGV----------------RSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPK 876
            ++  +D+  V RICSGQ + DLATAVKELVEN++DAGA  +EVKLK+FG D  EV DNG GV+P N+  L  K++TSK+SSF D+  V SFGFRGEALSS+CEL A F V TRT +  VG+ L Y   G L+ ++   R VGTTV++ +LF+PL VR  +FKRNIKK + KLL+ +QAYA+    ++I V N+  K   +  ++ TQ +  +G+N+ NVFG KF  TL+ V+  + K SG+    ++     E  SDG                 R + G VSK G GVGRSDNDRQF ++NGRP DLPK
Sbjct:    6 TLHVLDRRDVQRICSGQSVVDLATAVKELVENALDAGATQIEVKLKEFGRDAFEVGDNGAGVTPENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTKNDAVGMLLEYDASGTLVKETKKARPVGTTVTVEELFKPLAVRYKDFKRNIKKHYAKLLKVLQAYAVSCANVKICVFNITGKNASRHVVLATQAHQTMGENIANVFGTKFFRTLLRVDFEL-KGSGKSEKDEKDXAXXEGDSDGEQKSSAVEIEDNLSGQERKVEGYVSKVGAGVGRSDNDRQFFFINGRPFDLPK 314          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A8K1C3K6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3K6_PYTOL)

HSP 1 Score: 288 bits (736), Expect = 6.060e-88
Identity = 150/305 (49.18%), Postives = 203/305 (66.56%), Query Frame = 1
Query:    4 GERSIKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSK-GGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKD-SGEDVML-----------DQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPKV 879
            G  ++  + K  V RICSGQ + DLATAVKELVEN++DAGA  +EVKLK++G + IEVSDNG GV+P N+E L LK++TSK+S+F D+A V SFGFRGEALSSLC+L A F V TRT    +G  L +   G L+++    R VGTTV + +LF+PLPVR  +F RNIKK + KLLR +Q YA+  + ++++V+N   K   +Q ++ TQ +  +G+N+ +VFG KF  TL  V+  +N     EDV             DQ+  +   R + G VS+ GEGVGRSDNDRQF ++N RP DLP+V
Sbjct:   15 GRSTLHVLPKEDVLRICSGQSVVDLATAVKELVENALDAGATQIEVKLKEYGKESIEVSDNGSGVTPDNYETLALKHYTSKISTFEDIASVASFGFRGEALSSLCQLAAHFSVCTRTQSDPIGTTLVFNTSGTLVSQIKKARPVGTTVLVEELFKPLPVRAKDFHRNIKKHYAKLLRVLQGYAVSCVNVKLSVSNTTGKHASRQIVLSTQAHQSMGENIASVFGTKFFRTLTGVDFDLNTAWPSEDVSSQAEPEEESKHDDQDEINKASRRVVGFVSRVGEGVGRSDNDRQFFFINSRPFDLPRV 319          
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Match: A0A6A5AJV7_9STRA (DNA_mis_repair domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AJV7_9STRA)

HSP 1 Score: 277 bits (709), Expect = 6.220e-88
Identity = 148/286 (51.75%), Postives = 194/286 (67.83%), Query Frame = 1
Query:   16 IKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLKDFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGEALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVSIAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSKGG-KQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDL 870
            +K+I K  V +ICSGQ + DLATAVKELVEN++DAGA  VEVKLK+FG    EVSDNG G+   +H  + LK++TSK+ +F DL RV SFGFRGEALSS+C+L+  F V TRTAD ++G  L Y + G L++ S   R VGTTV +  LF PLPVR  +F +NIKK + K LR +Q YA+IS  +++   N+  K   +Q ++ T+ N  + +N+ NVFG+KFL TLVAV++ +      D++       D    I G VSK G GVGRSDNDRQF Y+NGRPVDL
Sbjct:    2 LKSIPKGDVQKICSGQSVVDLATAVKELVENALDAGATAVEVKLKEFGHVGFEVSDNGQGIPAADHAAIALKHYTSKIRAFEDLERVVSFGFRGEALSSICQLSGVFSVHTRTADDSIGTLLQYDQHGALISSSKKARAVGTTVIVDDLFLPLPVRYKDFTKNIKKHYGKTLRILQGYAVISSNVKLCCVNIMGKNNLRQQVLSTEANRAVANNIANVFGSKFLKTLVAVDISL--PFWPDII-------DSAFHITGFVSKVGAGVGRSDNDRQFFYVNGRPVDL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11083.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV66_ECTSI8.410e-14773.65Postmeiotic segregation increased 2 n=2 Tax=Ectoca... [more]
A0A835YM26_9STRA2.160e-11064.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Y1HU70_KLENI1.460e-9253.98DNA mismatch repair protein-MLH1 family n=1 Tax=Kl... [more]
A0A1S3H5N3_LINUN1.190e-9051.74mismatch repair endonuclease PMS2 n=1 Tax=Lingula ... [more]
A0A388M176_CHABU3.210e-8952.78Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2K1K8F7_PHYPA1.830e-8851.71Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
UPI000D1C79532.010e-8853.31DNA mismatch repair protein PMS1 isoform X2 n=3 Ta... [more]
A0A0W8DAC7_PHYNI3.500e-8849.03DNA_mis_repair domain-containing protein n=1 Tax=P... [more]
A0A8K1C3K6_PYTOL6.060e-8849.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A5AJV7_9STRA6.220e-8851.75DNA_mis_repair domain-containing protein (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11083contigC-tenellus_contig11083:1517..4359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV66
Preferred namePms1
PFAMsDNA_mis_repair,HATPase_c_3,MutL_C
Model size879
Max annot lvl2759|Eukaryota
KEGG koko:K10858
KEGG Pathwayko03430,ko03460,map03430,map03460
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0015630,GO:0016020,GO:0016445,GO:0016446,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022414,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032138,GO:0032300,GO:0032389,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061458,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363,GO:1990391,GO:1990904
Exons5
Evalue1.38e-147
EggNOG OGsCOG0323@1|root,KOG1978@2759|Eukaryota
Descriptionmismatched DNA binding
Cds size879
COG categoryL
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.1874-CDS-C-tenellus_contig11083:1516..16301680789162.1874-CDS-C-tenellus_contig11083:1516..1630Choristocarpus tenellus KU2346CDSC-tenellus_contig11083 1517..1630 +
1680789162.2005465-CDS-C-tenellus_contig11083:2534..28341680789162.2005465-CDS-C-tenellus_contig11083:2534..2834Choristocarpus tenellus KU2346CDSC-tenellus_contig11083 2535..2834 +
1680789162.2130263-CDS-C-tenellus_contig11083:3658..38741680789162.2130263-CDS-C-tenellus_contig11083:3658..3874Choristocarpus tenellus KU2346CDSC-tenellus_contig11083 3659..3874 +
1680789162.2221894-CDS-C-tenellus_contig11083:4056..41971680789162.2221894-CDS-C-tenellus_contig11083:4056..4197Choristocarpus tenellus KU2346CDSC-tenellus_contig11083 4057..4197 +
1680789162.2335503-CDS-C-tenellus_contig11083:4251..43591680789162.2335503-CDS-C-tenellus_contig11083:4251..4359Choristocarpus tenellus KU2346CDSC-tenellus_contig11083 4252..4359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11083.1.1prot_C-tenellus_contig11083.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11083 1517..4359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11083.1.1

>prot_C-tenellus_contig11083.1.1 ID=prot_C-tenellus_contig11083.1.1|Name=mRNA_C-tenellus_contig11083.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=293bp
MGERSIKAIDKTSVARICSGQVITDLATAVKELVENSIDAGAKHVEVKLK
DFGLDMIEVSDNGCGVSPGNHEGLVLKYHTSKLSSFSDLARVTSFGFRGE
ALSSLCELTADFFVTTRTADQTVGVKLAYGRDGKLLNKSTAPRQVGTTVS
IAKLFEPLPVRRGEFKRNIKKQFNKLLRAMQAYALISLGIRITVTNVKSK
GGKQTLIGTQYNNKLGDNVTNVFGAKFLSTLVAVEVCINKDSGEDVMLDQ
ESGSDGVRSIWGMVSKAGEGVGRSDNDRQFLYLNGRPVDLPKV
back to top

mRNA from alignment at C-tenellus_contig11083:1517..4359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11083.1.1 ID=mRNA_C-tenellus_contig11083.1.1|Name=mRNA_C-tenellus_contig11083.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2843bp|location=Sequence derived from alignment at C-tenellus_contig11083:1517..4359+ (Choristocarpus tenellus KU2346)
ATGGGTGAGCGAAGTATAAAGGCTATTGATAAGACCTCAGTAGCGCGGAT ATGCTCTGGGCAGGTTATTACAGACCTGGCAACGGCAGTGAAGGAGCTTG TCGAAAATTCCATTGTGCGTGGAGTCAAACTCCCTTTTTCACCTCTCCTA CTGCAACCGCCTACACAAGGGCATCAATAGGAAAGCCTAAACACCTACAA ATCCCTAAACCTTGCGGGCCTGCAATTAAAGCATTCACTTAGATAAGCAA TGCCGAGCCCTTAATGGAATACAGTGGTTGGGCTGGGACTGTGTACAACC AGCTCGCCTCGCAGCCCCATACCATAATCACAGCCTGAAGTCCAAGTTGT GACTGTGTCTTATCTCCTTTCATCATATTCTTCGGCTGCGCTCGCTTGCT TCGTCCGTACATGCTCTCTGTGAACTGCATGGTGGTCTGGGTTATTGAAA TGACAATTTTGTCTAGCATGCCCCTGCTTCAGATTAAGTTCAGTGATCGC AATCGGTTACCAGGGGGCAGTAGCTGGAGACTTCTCTCCTGTAGACTATT TTCCAGCTGAGGGTATATAAAATTTTCTAGCTGATTTTTGCTGCGCGATT TACGTTGCCGCCTTTTGTCAAGATCTCCCTCACATATAATCACCAACCCT GCTTATCGCAACTCTTTCCTTCCATCCCGCTTCACAGCTATCTTTTTGTC TACTTGAACGTTTTCTCCTACAACACACCACTCTTCCCTACAAACTTGGC CCCTGAATACATTACACTCTGCCCTACTCCCTTATTATGCTTCTTGACCA AACCAGTCTGAGCACTATTTGCAGATAAATGTTTTGCTCAAGTTTTCTGA TTGACTTGTTTCATGAGACCAGATGCCAACTGTATTTTATTTTTCGAGAG TCCATGTATGGAGTATTGGATTGCTGTTGGCGCTTCAAAGCACTAGCATA GTAGCACAAGATTCGCTCATCTGACCTAATGTGTTTTTTGTGTATGCTTT TTCGTTCTCATTTCTCAGGATGCCGGGGCCAAGCACGTGGAGGTCAAACT TAAGGACTTTGGGTTGGACATGATTGAGGTCTCTGATAATGGTTGTGGAG TATCTCCAGGCAATCATGAGGGATTAGTATTGAAGTATCACACATCAAAG CTATCCAGCTTCTCTGACCTTGCCCGGGTGACATCGTTTGGTTTTCGGGG TGAAGCCCTTAGTTCCCTCTGTGAACTAACTGCTGACTTCTTTGTCACAA CAAGGACTGCTGATCAGACTGTTGGAGTCAAGCTAGCCTATGGACGAGAT GGCAAGCTCCTAAACAAGGTTGGTATGAAACTGTTGCACCCATCGCTTTT GTCTGGTATGTTTGATAGTGATGGTGTGATATGACACACCCTCTTCACTG ACAAAGTAGGAGTAGCTAGCAGGTATTACTTTCCTTGGTGGGGTAACGTT AACTTGGGGTAGTATGGGTAGTGTACAGTGATGGACCTTGTTTTCGAGCT CAGCACTGTACCCTTTGCTTGTAATTGCTTGTGTTTTAGTCCTATGTTAT TGTTCATATCAAAAAGACGAGCCACAATGGTAGTGTTGTGTATTGTCACA CTTCAATTGGCTTCAGTTCGATTAATTGGAGTAACCAAATAACTGATTTT AAATATTTTTCTTCTTATAAGTATATATATGTGTGATGACTGGGTGTGTC CAAGCTCACAGGAGAGCTAAAGTTTTTTCACAAGATGTCACTACCCACGG CTCACTACACATTTCACTGTTCATGACTGCAGACCTGGATGCTGAGACCT GTGGAGGCTTTGGAATTTTTTACTCACAGTGGCATATACCTCTCGGCAAC AAACCTGCATATTACGCACATCTCCTAATGCGCTGAAAACTCAGTTCAAT TCAGTAAAGATGGAATTGTTTTTTTCTCTAGGCGATTTTATTGTAGTTGT AACTTTTTTCTGGTTCATGGCACTACAAAATAGTGAGCATGACCGAGTAT GACAAAGGTCAAAGATAGGCCATGAACAGCATTGATAGATTGCATCATTT GGGCTCTACAGTTAGCTGCTTTGATCTGTTTGACTTATTCCACCAACTTG TGATGATTTCTGTCTTTGACTGTTTGTTCTGGCTGCTGCCAGAGTACTGC TCCAAGGCAGGTTGGGACCACTGTAAGCATTGCTAAACTGTTTGAGCCTC TGCCAGTGCGACGAGGGGAGTTCAAGCGAAATATCAAAAAACAGTTCAAC AAGCTCCTGCGTGCAATGCAGGCTTATGCTCTTATTAGCCTTGGAATCAG AATTACGGTCACCAATGTGAAATCCAAGGGAGGAAAGCAGACTCTTATTG GTACACAGGTCAGGGCACCCCTTGCTGCAATTATCCCTTGTTGGGGTGAT TGCTTATGGGCTGAGGTAGTTGTAGTACAAGGTGATGCTAATCTTTACAT GCTGAGGCTGATGTTGTGCTTGATATCTATTATGATTATGACTGCCGCCA TGTCTCTCAATCTTCCTTATGTTTTTTCAACTTATTACAGTATAACAACA AACTTGGGGACAATGTGACCAATGTCTTTGGAGCCAAATTCCTGTCAACA TTAGTGGCCGTGGAGGTGTGTATCAACAAAGACAGTGGAGAGGATGTCAT GCTTGACCAGGAAAGTGGGAGTGATGGTGTTGTGACTGATGCAGCTGGCA ATGCGCAGGTGCCACAGGTGGAAGGAGGAACAAAGCGAAGCATATGGGGG ATGGTTTCCAAAGCGGGAGAAGGCGTTGGTCGTTCGGATAATGACCGACA GTTTCTCTATCTCAATGGTAGACCGGTGGACCTGCCCAAGGTA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11083:1517..4359+

>mRNA_C-tenellus_contig11083.1.1 ID=mRNA_C-tenellus_contig11083.1.1|Name=mRNA_C-tenellus_contig11083.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=879bp|location=Sequence derived from alignment at C-tenellus_contig11083:1517..4359+ (Choristocarpus tenellus KU2346)
ATGGGTGAGCGAAGTATAAAGGCTATTGATAAGACCTCAGTAGCGCGGAT
ATGCTCTGGGCAGGTTATTACAGACCTGGCAACGGCAGTGAAGGAGCTTG
TCGAAAATTCCATTGATGCCGGGGCCAAGCACGTGGAGGTCAAACTTAAG
GACTTTGGGTTGGACATGATTGAGGTCTCTGATAATGGTTGTGGAGTATC
TCCAGGCAATCATGAGGGATTAGTATTGAAGTATCACACATCAAAGCTAT
CCAGCTTCTCTGACCTTGCCCGGGTGACATCGTTTGGTTTTCGGGGTGAA
GCCCTTAGTTCCCTCTGTGAACTAACTGCTGACTTCTTTGTCACAACAAG
GACTGCTGATCAGACTGTTGGAGTCAAGCTAGCCTATGGACGAGATGGCA
AGCTCCTAAACAAGAGTACTGCTCCAAGGCAGGTTGGGACCACTGTAAGC
ATTGCTAAACTGTTTGAGCCTCTGCCAGTGCGACGAGGGGAGTTCAAGCG
AAATATCAAAAAACAGTTCAACAAGCTCCTGCGTGCAATGCAGGCTTATG
CTCTTATTAGCCTTGGAATCAGAATTACGGTCACCAATGTGAAATCCAAG
GGAGGAAAGCAGACTCTTATTGGTACACAGTATAACAACAAACTTGGGGA
CAATGTGACCAATGTCTTTGGAGCCAAATTCCTGTCAACATTAGTGGCCG
TGGAGGTGTGTATCAACAAAGACAGTGGAGAGGATGTCATGCTTGACCAG
GAAAGTGGGAGTGATGGTGTTCGAAGCATATGGGGGATGGTTTCCAAAGC
GGGAGAAGGCGTTGGTCGTTCGGATAATGACCGACAGTTTCTCTATCTCA
ATGGTAGACCGGTGGACCTGCCCAAGGTA
back to top